Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_946965.3
- Aligned Length:
- 3776
- Identities:
- 173
- Gaps:
- 3578
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAATTTGACTGTGGGAGGGAGGGTGGTTTTGGTTTTTGCCATGTTGGTGTTTTAAAAGCAGCAGGGAGTTGAGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGCTTGTGGACTGGAAGGAAGGAGCCAGCAGACAGGGAGGAGAGGAGGGGAAGTGGGTAGTGAAGGGGAGAGAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AATAGCCAGGGGTGGTGGGCAGAAGGAGAGGAAATGGAACCCTAGAGGCCTGGGCAGGAGGCCTCTTGCTGTTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGCTGCGGCCGGCTGTATTTTGAGACCTTAACCTTCACCTTCTCAGCTGTGTTGGATGCGGCCTCCAGAGGCCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGGAGAGGTGGGGATCAGACGGGGTTCAACAGGGAGCCAGAACCATGAGAACAGCTCAACTCCAAATAGGCGCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTTCCATCGCCTCCATCGCCGCTGTAGCTGGTGGCTGTCAGATTGGACAGCACGGTAGAGGCGGGTCAGGAAAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCAAGGAGAGCACTTTTGGAAGCGTCTGGATCCTGGGCCCTCGGGGAGGGCAGGGCCTGGGTCCTGATGTGAGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGCCTGGAGCCTGTCCGTGGCCGAGAGGGCCTCCTTCCTCCTTCCTGGCCGACACGTCACCTGCTCCGTCCAGT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCACGAGAAGCAGCTGTGGCCCAAGCCCATGACCTGCCTTTCTTCCCCAGCGTCACCATCTGTGGCAGCCTGGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATACGCATGAGCTCCTCAGGAGGGCGGAGCTCCGTGGAACACACATCTGGATGACAGGAGGGAGCCAGGAGCTG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TGAGAAGACGGGGGAGCTGCCGCCGCAAGAATGCAAGACCCACGGGCTCTACGATGCGGGGGAGCAGCGGGCAT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTGAGGAAGGGGCGTCAGGGGCACATGGCCAGCCCTCTTCACCCCACAGTCTGCCCCAGGCCAGCCCCACTAGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGTGACCCATTTTCTCCTAGCAGGATTCCTTGCATGGGGTGGCCTGGACCCAAAACACCCGCTCTGAGGATTCC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTGTTAACCACAGAGAAGGTTGACTCAAGTTTCTTTATTTGGCCATGAAACTGTGGGGCATCTCACGGTGCTTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTGGGTCCACTGGAGAGCCCTGGAAGCTCAGAAGAGGCAAGAGGGGCCTACTTCTCCCTTGTTTGGGCTTTGTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TGCTAAATACCAATATTAGATTAGGCAACTCTGCAAACAAAACCAAGGCCTGGCCAGCTGCCCAGGGTGTTTAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGTCCAAGACATGAAGGCAGGACGTGTGCCCGTGGACTTGCACACGCAAGCAGGCCGAGGGGAGAGCAGCCCGG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CAGAGACCTTGGTGGTCCAGGGCTGAGCAAAGGCTTCCCCCACCGGTCCATCCCAGTGCGCTCAGCACAGGAGT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TAGCGGCCACACACTTCAACCATTGTCTTATTTTAGAAAATGACATCTGCTGGGCGCGGTGACTCACGCCTGTA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ATCCCAGCATTTTGAGAGGGCAAGGTCAGGAGTGATCACTTTGGGTGGACCACGAGGTCAGGAGTTCAAGATCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCCTGGCCAACATGGTGAAACTCCGTCTCTACTCAAAATACAAAAATTAGCCAGGCGTGGTGGCTCACACTTAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AATCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATGGCTTGAACCTGGGAGGCGGAGGTTGTAGTGAGCCGAGA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CTGCTCCACTGGACTGCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGAAGATGACATC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CATGATGTTAATAAAAGCGGAGGTATTAGGGGAAGGGAGACATCCTGTCAACTTTTCATCAGCTCACATTTGAC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CCTCAGCTTTTTTCTGTTAATCTAGTTATCATATCAACAGCGTTCTCACAAATGACCAAAGACAGTGTCGGTGG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CTCTTAGTGTTTGAAAGTAAAAATGTATAATATTTTTAAAATGCCAACAGACTGAAAACAGGAATGAGGCATCA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TTGGTTGTAAACTGTCTCCTGAGCTGGTAATTCCATCTCCATCTCAAGCAGAAAAAACATACCCGTGTGCCCAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GGGCTCTCACCCCAGCACACCTCTTGCCCACTTAGCCTAGTTGATGGTCAAATTACTGAGTGGAGTTTAAATGC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCTTCAGACTTTATAGGTGGAATTCCTGAAACGCGTCTATCTGGAAGAGGAGAGGTAGTAGTATTGGGAAGGGA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ACAGGAAGTAGGCGGTGTGGAGTGCTGTTTGTTAAATGCTATCTCTTACCGTCTGTGTTTGTTTCTACTTAGCT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TGCCTTATCTCTCTCCTCCCGCCCACTCTGTCATTCAACTACCCAGTTCCCCACCCTGGTTTCTTGTGTATTTT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTTCCAGGAAGACACACACACACACACACATTTATATATATATAAAATAGGCCAGATCCCATCCTTCCTGGGTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CACCCTTCCTGGGCAGCCCCTCAACCCAGCACACAAACACACTGTTATTTTTCTCATCTCAATTCTCAATCCAC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CCTTGATCTTGTACCCCAATCCAGCCACTGCTCAATTCTTTGCTTTCTTTAAAATACAATTTGTCAAATTATAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GTATGTGTGTTGGCAATTACATATATACCTGTATATTTACTCTCCACCCCTCTTTTTTCTTTTCTTTTTTCTTT 2590
Query 1 -------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGC 67
|||||||||..|||||||||||||.|||.|||||||||||...|||||||||||||||||||||..|
Sbjct 2591 TTTTTTGATGGAGTCTTGCTCTGTCACCCAGACTGTAGTGCAGTGGCCCAATCTTGGCTCACTGCAACCTCCAC 2664
Query 68 CTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCCACCATACCTG 141
||||.||||||||||.|||||||.|.|||||||.|||||||||||||||||||||..||||||||||||.||||
Sbjct 2665 CTCCCGGGTTCAAGCGATTCTCCTAGCTCAGCCCCCCAAGTAGCTGGGATTACAGGTGTGTGCCACCATGCCTG 2738
Query 142 GGTAA------TTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT----------- 198
|.||| ||||||.|||||||||.||||..|||||||||.||||||||||||.|||||.
Sbjct 2739 GCTAATTTTATTTTTTGTATTTTTAGTAGAGACAGAGTTTCACTATGTTGGCCAGGCTGGTCCCGAACTCCTGG 2812
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2813 CCTCAAATGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACACCCAGCCTCTC 2886
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2887 TTTTTATTTTTTACAAAGATTCTAGCTTAGTACTTCCTTGCATTTTTCACTTTGTCTTGGAGATCATTCCTTAT 2960
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2961 CAGCACATGACCTTTCTTTTATTTTTTATTTTTAAAGGCTTGTCAAGTGAAGCGGTGGGAGTGGAGAAGGAGCA 3034
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3035 AAGAAATCTGTTAACTGGTTGGGATCGGTGAGTTGTAAGCAGCCGCATAAAGAACATTTCTGTTTTCTTGGATT 3108
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3109 ACAACATGATTTCCATTGTATAGAAATACCGTATTTATTCCGCCAGTCCCCCACCCATAGTCACTTAAGTTGTT 3182
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3183 TCCAGCCTTCCCAATCTTCTTGCTGTTACAAGGCTGCCACGAATCACCTTGTGTATACTTGATTTTTCTGATAA 3256
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3257 GTTAAAAAGTCCTAGAGGAGAAATTGCCCAATCCTTTGTGCACCTGTAATTTTGATAAATATTGCTAAGTTGCC 3330
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3331 TTCCATAAGGTTTGTACCAATTTACACAGCCACCGGCAATGAATGAGAGTGCACTTACCCACACCCCTACCAAT 3404
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3405 GCAATCTGTTAGCAAATTTTCTGAACTTTGCCAATTTGGAGAAAATGGGTATTTCAGCGTAGTTTGAATGTATA 3478
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3479 CTTACTTCTCTTGTGGGAAATTATGTTTAAGAGCCATTTCCTTTTCCGTGAACTATGTTTTAAAAATCTTTTCT 3552
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3553 GGTTTGTTTGTTTTATTGAGATGGAGTCTCACTCTGTTCCCCAGGCTGGAGTGCAGTGTGGTGCAATCTCAGCT 3626
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3627 CACTGCAGCCTCCGTCTCCCGGGTTCAAGTGATTCTCCTCCTCAGCCTCCCAAGTAGCTGGGAACTATAGGGTC 3700
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3701 GCGCCACCACACCCGGCTAATTTTTGTATTTTTAGTGGAGACAGGGTTTCACCAGGTTGGCCAGGCTGGTCTTG 3774
Query 199 -- 198
Sbjct 3775 AA 3776
