Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_946966.3
- Aligned Length:
- 3734
- Identities:
- 173
- Gaps:
- 3536
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAATTTGACTGTGGGAGGGAGGGTGGTTTTGGTTTTTGCCATGTTGGTGTTTTAAAAGCAGCAGGGAGTTGAGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGCTTGTGGACTGGAAGGAAGGAGCCAGCAGACAGGGAGGAGAGGAGGGGAAGTGGGTAGTGAAGGGGAGAGAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AATAGCCAGGGGTGGTGGGCAGAAGGAGAGGAAATGGAACCCTAGAGGCCTGGGCAGGAGGCCTCTTGCTGTTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGCTGCGGCCGGCTGTATTTTGAGACCTTAACCTTCACCTTCTCAGCTGTGTTGGATGCGGCCTCCAGAGGCCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGGAGAGAACAGCTCAACTCCAAATAGGCGCATTTCCATCGCCTCCATCGCCGCTGTAGCTGGTGGCTGTCAGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTGGACAGCACGGTAGAGGCGGGTCAGGAAATGCAAGGAGAGCACTTTTGGAAGCGTCTGGATCCTGGGCCCTC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGGGAGGGCAGGGCCTGGGTCCTGATGTGAGGAGCCTGGAGCCTGTCCGTGGCCGAGAGGGCCTCCTTCCTCCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCCTGGCCGACACGTCACCTGCTCCGTCCAGTCCACGAGAAGCAGCTGTGGCCCAAGCCCATGACCTGCCTTTC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTCCCCAGCGTCACCATCTGTGGCAGCCTGGGATACGCATGAGCTCCTCAGGAGGGCGGAGCTCCGTGGAACAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ACATCTGGATGACAGGAGGGAGCCAGGAGCTGTGAGAAGACGGGGGAGCTGCCGCCGCAAGAATGCAAGACCCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CGGGCTCTACGATGCGGGGGAGCAGCGGGCATCTGAGGAAGGGGCGTCAGGGGCACATGGCCAGCCCTCTTCAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CCCACAGTCTGCCCCAGGCCAGCCCCACTAGGAGTGACCCATTTTCTCCTAGCAGGATTCCTTGCATGGGGTGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCTGGACCCAAAACACCCGCTCTGAGGATTCCCTGTTAACCACAGAGAAGGTTGACTCAAGTTTCTTTATTTGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CCATGAAACTGTGGGGCATCTCACGGTGCTTCTTGGGTCCACTGGAGAGCCCTGGAAGCTCAGAAGAGGCAAGA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GGGGCCTACTTCTCCCTTGTTTGGGCTTTGTTTGCTAAATACCAATATTAGATTAGGCAACTCTGCAAACAAAA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCAAGGCCTGGCCAGCTGCCCAGGGTGTTTAAAGTCCAAGACATGAAGGCAGGACGTGTGCCCGTGGACTTGCA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CACGCAAGCAGGCCGAGGGGAGAGCAGCCCGGCAGAGACCTTGGTGGTCCAGGGCTGAGCAAAGGCTTCCCCCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CCGGTCCATCCCAGTGCGCTCAGCACAGGAGTTAGCGGCCACACACTTCAACCATTGTCTTATTTTAGAAAATG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ACATCTGCTGGGCGCGGTGACTCACGCCTGTAATCCCAGCATTTTGAGAGGGCAAGGTCAGGAGTGATCACTTT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GGGTGGACCACGAGGTCAGGAGTTCAAGATCAGCCTGGCCAACATGGTGAAACTCCGTCTCTACTCAAAATACA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AAAATTAGCCAGGCGTGGTGGCTCACACTTATAATCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATGGCTTGA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ACCTGGGAGGCGGAGGTTGTAGTGAGCCGAGACTGCTCCACTGGACTGCAGCCTGGGTGACAGAGCGAGACTCC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GTCTCAAAAAAAAAAAAAAAGAAGATGACATCCATGATGTTAATAAAAGCGGAGGTATTAGGGGAAGGGAGACA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TCCTGTCAACTTTTCATCAGCTCACATTTGACCCTCAGCTTTTTTCTGTTAATCTAGTTATCATATCAACAGCG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTCTCACAAATGACCAAAGACAGTGTCGGTGGCTCTTAGTGTTTGAAAGTAAAAATGTATAATATTTTTAAAAT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GCCAACAGACTGAAAACAGGAATGAGGCATCATTGGTTGTAAACTGTCTCCTGAGCTGGTAATTCCATCTCCAT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CTCAAGCAGAAAAAACATACCCGTGTGCCCAGGGGCTCTCACCCCAGCACACCTCTTGCCCACTTAGCCTAGTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GATGGTCAAATTACTGAGTGGAGTTTAAATGCCCTTCAGACTTTATAGGTGGAATTCCTGAAACGCGTCTATCT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GGAAGAGGAGAGGTAGTAGTATTGGGAAGGGAACAGGAAGTAGGCGGTGTGGAGTGCTGTTTGTTAAATGCTAT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CTCTTACCGTCTGTGTTTGTTTCTACTTAGCTTGCCTTATCTCTCTCCTCCCGCCCACTCTGTCATTCAACTAC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CCAGTTCCCCACCCTGGTTTCTTGTGTATTTTTTTCCAGGAAGACACACACACACACACACATTTATATATATA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TAAAATAGGCCAGATCCCATCCTTCCTGGGTCCACCCTTCCTGGGCAGCCCCTCAACCCAGCACACAAACACAC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TGTTATTTTTCTCATCTCAATTCTCAATCCACCCTTGATCTTGTACCCCAATCCAGCCACTGCTCAATTCTTTG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CTTTCTTTAAAATACAATTTGTCAAATTATATGTATGTGTGTTGGCAATTACATATATACCTGTATATTTACTC 2516
Query 1 ---------------------------------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCA 35
|||||||||..|||||||||||||.|||.||||||
Sbjct 2517 TCCACCCCTCTTTTTTCTTTTCTTTTTTCTTTTTTTTTGATGGAGTCTTGCTCTGTCACCCAGACTGTAGTGCA 2590
Query 36 GTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTA 109
|||||...|||||||||||||||||||||..|||||.||||||||||.|||||||.|.|||||||.||||||||
Sbjct 2591 GTGGCCCAATCTTGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTCCTAGCTCAGCCCCCCAAGTA 2664
Query 110 GCTGGGATTACAGACGTGTGCCACCATACCTGGGTAA------TTTTTGCATTTTTAGTGGAGAGGGAGTTTCA 177
|||||||||||||..||||||||||||.|||||.||| ||||||.|||||||||.||||..||||||||
Sbjct 2665 GCTGGGATTACAGGTGTGTGCCACCATGCCTGGCTAATTTTATTTTTTGTATTTTTAGTAGAGACAGAGTTTCA 2738
Query 178 CCATGTTGGCCAGGTTGGTCT----------------------------------------------------- 198
|.||||||||||||.|||||.
Sbjct 2739 CTATGTTGGCCAGGCTGGTCCCGAACTCCTGGCCTCAAATGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGA 2812
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2813 TTACAGGCGTGAGCCACCACACCCAGCCTCTCTTTTTATTTTTTACAAAGATTCTAGCTTAGTACTTCCTTGCA 2886
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2887 TTTTTCACTTTGTCTTGGAGATCATTCCTTATCAGCACATGACCTTTCTTTTATTTTTTATTTTTAAAGGCTTG 2960
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2961 TCAAGTGAAGCGGTGGGAGTGGAGAAGGAGCAAAGAAATCTGTTAACTGGTTGGGATCGGTGAGTTGTAAGCAG 3034
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3035 CCGCATAAAGAACATTTCTGTTTTCTTGGATTACAACATGATTTCCATTGTATAGAAATACCGTATTTATTCCG 3108
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3109 CCAGTCCCCCACCCATAGTCACTTAAGTTGTTTCCAGCCTTCCCAATCTTCTTGCTGTTACAAGGCTGCCACGA 3182
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3183 ATCACCTTGTGTATACTTGATTTTTCTGATAAGTTAAAAAGTCCTAGAGGAGAAATTGCCCAATCCTTTGTGCA 3256
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3257 CCTGTAATTTTGATAAATATTGCTAAGTTGCCTTCCATAAGGTTTGTACCAATTTACACAGCCACCGGCAATGA 3330
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3331 ATGAGAGTGCACTTACCCACACCCCTACCAATGCAATCTGTTAGCAAATTTTCTGAACTTTGCCAATTTGGAGA 3404
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3405 AAATGGGTATTTCAGCGTAGTTTGAATGTATACTTACTTCTCTTGTGGGAAATTATGTTTAAGAGCCATTTCCT 3478
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3479 TTTCCGTGAACTATGTTTTAAAAATCTTTTCTGGTTTGTTTGTTTTATTGAGATGGAGTCTCACTCTGTTCCCC 3552
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3553 AGGCTGGAGTGCAGTGTGGTGCAATCTCAGCTCACTGCAGCCTCCGTCTCCCGGGTTCAAGTGATTCTCCTCCT 3626
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3627 CAGCCTCCCAAGTAGCTGGGAACTATAGGGTCGCGCCACCACACCCGGCTAATTTTTGTATTTTTAGTGGAGAC 3700
Query 199 ---------------------------------- 198
Sbjct 3701 AGGGTTTCACCAGGTTGGCCAGGCTGGTCTTGAA 3734
