Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11657
- Subject:
- NM_001001980.3
- Aligned Length:
- 3178
- Identities:
- 417
- Gaps:
- 2705
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCTTGCCCCGCTCTCGGTCTGGAAGTCCTTCAACCCCTGCAGCCCGAACCACCTCCGGAGCCTGCCTTCGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGAGGCACAGAAGTGGATCGAGCAAGTCACTGGTCGAAGTTTTGGTGACAAAGACTTCCGGACAGGACTAGAAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATGGGATCCTCCTTTGCGAGTTGCTGAATGCTATAAAGCCAGGACTTGTTAAAAAGATCAATAGATTGCCTACC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCCATTGCAGGATTGGACAATACCATCTTATTCTTGAGAGGCTGTAAGGAGCTTGGCCTTAAAGAATCTCAACT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTTTGACCCGAGTGACCTCCAGGATACCTCCAACAGGGTCACTGTCAAGAACCTCGATTATAGCAGGAAGCTGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAAACGTGCTAGTGACCATTTACTGGCTGGGGAAAGCTGCAAACAGCTGTGCATCCTACGGTGGAACCACACTG 444
Query 1 ------ATGGATTCCGAAAGACAAGTCAAGGTT-------------AAGGACACTGATGACATTGAAAGTCCTA 55
|.|||.|..|||.|.| .||| |||||.|||||.||||||||.||.||.|
Sbjct 445 AACCTGAAGGAGTTTGAAGGGC-------TGTTGGCTCAGATGCGAAAGGAGACTGACGACATTGATAGCCCGA 511
Query 56 AACGCAGTATCCGAGACAGTGGCTACATCGACTGCTGGGATTCCGAGCGCAGCGACTCCCTCTCTCCTCCTCGC 129
|.|||||.||||||||||||||||||||||||||||||||.||.||.|||||||||||||||||||||||||||
Sbjct 512 AGCGCAGCATCCGAGACAGTGGCTACATCGACTGCTGGGACTCTGAACGCAGCGACTCCCTCTCTCCTCCTCGC 585
Query 130 CACGGCAGAGATGATTCCTTCGACAGCCTGGATTCCTTTGGCTCTCGCTCTCGGCAGACGCCTTCACCAGATGT 203
|||||..|.|||||.|||||.||||||||||||||.||||||||.|||||..|||||||.|||||.||||||||
Sbjct 586 CACGGACGGGATGACTCCTTTGACAGCCTGGATTCTTTTGGCTCCCGCTCCAGGCAGACACCTTCGCCAGATGT 659
Query 204 AGTCCTCAGGGGAAGCAGCGATGGGAGAGGAAGCGACTCTGAATCCGACTTGCCTCATCGGAAGCTGCCAGATG 277
|||.||||||||||||||.|||||.|||||||||||.||||||||.||||||||.||.||||||.|||||||||
Sbjct 660 AGTTCTCAGGGGAAGCAGTGATGGAAGAGGAAGCGATTCTGAATCAGACTTGCCGCACCGGAAGTTGCCAGATG 733
Query 278 TGAAGAAGGATGACATGTCTGCACGGCGGACTTCCCATGGTGAGCCGAAATCAGCAGTGCCTTTTAACCAGTAC 351
|||||||.|||||.|||||.|||||..|||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 734 TGAAGAAAGATGATATGTCCGCACGAAGGACTTCTCATGGTGAGCCGAAATCAGCAGTGCCTTTTAACCAGTAC 807
Query 352 CTCCCGAACAAAAGCAATCAGACGGCCTACGTCCCCGCGCCTCTGAGAAAGAAGAAAGCAGAGAGAGAGGAATA 425
|||||||||||||||||.|||||||||||||||||.||||||||||||||||||||.||.|||.|.|||||||.
Sbjct 808 CTCCCGAACAAAAGCAACCAGACGGCCTACGTCCCGGCGCCTCTGAGAAAGAAGAAGGCGGAGCGGGAGGAATT 881
Query 426 CCGCAAGAGCTGGAGTACCGCCACCTCCCCGCTGGGTGGGGAGAGGCCCTTCAGG------------------- 480
|.|.|||||.|||||.||||||||||||||.|||||||||||.|||||||||||.
Sbjct 882 CAGGAAGAGTTGGAGCACCGCCACCTCCCCCCTGGGTGGGGAAAGGCCCTTCAGATACGGTCCCAGAACTCCTG 955
Query 481 -------------------------------------------------------------------------- 480
Sbjct 956 TGTCAGATGACGCAGAGAGCACGAGTATGTTTGACATGCGGTGTGAGGAGGAGGCAGCGGTGCTGCCGCACAGC 1029
Query 481 -------------------------------------------------------------------------- 480
Sbjct 1030 AGGGCCCGCCAGGAGCAGCTGCAGCTGATAAATAACCAGCTGAGGGAAGAGGACGACAAATGGCAAGATGACCT 1103
Query 481 -------------------------------------------------------------------------- 480
Sbjct 1104 GGCTCGCTGGAAGAGCCGGAGAAGAAGCGCTTCTCAGGACTTGATCAAGAAAGAGGAAGAAAGGAAAAAAATGG 1177
Query 481 -------------------------------------------------------------------------- 480
Sbjct 1178 AGAAGCTGATGTCTGGGGAAGATGGGACAAGTGAGCGGAGGAAAAGCATCAAAACTTACAGAGAAATCGTCCAA 1251
Query 481 -------------------------------------------------------------------------- 480
Sbjct 1252 GAAAAAGAGCGGAGAGAGAGGGAACTTCATGAGGCGTACAAGAACGCAAGGTCGCAGGAGGAGGCCGAGGGGAT 1325
Query 481 -------------------------------------------------------------------------- 480
Sbjct 1326 CCTCCAGCAGTACATCGAGAGGTTCACCATCAGTGAGGCTGTCCTCGAACGCTTGGAGATGCCAAAAATCCTGG 1399
Query 481 -------------------------------------------------------------------------- 480
Sbjct 1400 AAAGAAGCCATTCAACAGAGCCAAACGTGTCCTCCTTCCCAAACGACCCCAGCCCCATGAAGTACCTGCGGCAG 1473
Query 481 -------------------------------------------------------------------------- 480
Sbjct 1474 CAGTCACTGCCCCCACCCAAGTTCACTGCCACGGTTGAGACCACCATAGCTCGCACCAGTGTCCCAGAGAGCAT 1547
Query 481 -------------------------------------------------------------------------- 480
Sbjct 1548 TGCGTCAGCAGGCACTGGGTCTCCAAGCAAAATCATCACTCCAAACACAGTGCCTATGCTGACACCCAGGCCTT 1621
Query 481 -------------------------------------------------------------------------- 480
Sbjct 1622 ACTCCCAGCCCAAAAACTCTCAAGAGGTTCTGAAGACTTTTAAGGTAGATGGGAAGGTCAGCATGAATGGGGAA 1695
Query 481 -------------------------------------------------------------------------- 480
Sbjct 1696 ATGGCCCCTGGAGATGAGGAAGGAAAGGAAAAAGAAGGCCCTGCAGCTGCAGCCCCTGGCCCTTCCTTAACCAA 1769
Query 481 -------------------------------------------------------------------------- 480
Sbjct 1770 GTCCCAGATGTTTGAAGGTGTGGCCACGGTGCACGACTCTCCTGTGCAGGTGAAACAAGGCAGCAACAGCATCG 1843
Query 481 -------------------------------------------------------------------------- 480
Sbjct 1844 AGATCAACATCAAGAAGCCAAATTCTGCTCCCCAGGAACTGACAGCAGCCTCTGAGGAAACTGAATCGAACGGC 1917
Query 481 -------------------------------------------------------------------------- 480
Sbjct 1918 CAAGAGGATGAAGACGGTGAAGAAAGGCCAGGGACAGGGGATTTGGAGCCTGACTCGGCAGAACCCCAGCACTT 1991
Query 481 -------------------------------------------------------------------------- 480
Sbjct 1992 TACGACAACTGTGACTCGGTGCAGCCCAACAGTGGCCTTGGTGGAGTTTTCATCCAACCCGCAGCTGAAGAATG 2065
Query 481 -------------------------------------------------------------------------- 480
Sbjct 2066 AGGTGCCAGAACAAGGCCAGAAGAAGCCAGAAGATGAGATGAGTGGGAAGGTGGAGTTAGTGTTGTCACAGAAG 2139
Query 481 -------------------------------------------------------------------------- 480
Sbjct 2140 GTGGCAAAGCCAAAATCCCCAGAGCCTGAAGCAACCCTGACGTTTCCATTTCTCGACAAAATGCCTGAAACCAA 2213
Query 481 -------------------------------------------------------------------------- 480
Sbjct 2214 CCAACTACATTTGCCAAATCCCAGTTCTCAAGCGGATTCTCCAAGCAGTGAAAAGTCCCCTGGGAGCACACCCT 2287
Query 481 -------------------------------------------------------------------------- 480
Sbjct 2288 TTAAGTTCTGGGCATGGGACCCAGAAGAGGAGCGCCGGCGACAGGAGAAATGGCAGCAGGAGCAGGAACGTCTG 2361
Query 481 -------------------------------------------------------------------------- 480
Sbjct 2362 CTGCAGGAGAGGTATCAGAAGGAGCAAGACAAGCTGAAGGAGGAGTGGGAAAAGGCCCAGAAGGAGGTCGAAGA 2435
Query 481 -------------------------------------------------------------------------- 480
Sbjct 2436 AGAAGAACGCAGATACTACGAGGAGGAGCGTAAGATAATTGAAGACACGGTGGTTCCATTCACTATTTCCTCAA 2509
Query 481 -------------------------------------------------------------------------- 480
Sbjct 2510 GCTCTGCAGACCAACTGTCTACGTCCTTGTCTGTAACTGAAGGCAGCGGGACAAGGAATAAGATGGACTTGGAA 2583
Query 481 -------------------------------------------------------------------------- 480
Sbjct 2584 AACTGCCCAGACAAAGAAAACGAGAGAAGACAGAAGACGCCTTTCCAGGAGAATGACGGTGATTCATTGCTCAA 2657
Query 481 -------------------------------------------------------------------------- 480
Sbjct 2658 AACTAGAGAAGGTGGTCTGCCAGAGGAGCAGAGCCTAACTCCAAGTCCCTCGGCTAACCCTGAAATCTCCGTGT 2731
Query 481 -------------------------------------------------------------------------- 480
Sbjct 2732 CAAAAGGAATCCATCAGGACCCGCAGCTGGAGGCAGAGGCTGGGGCCCCACACTGTGGTACAAACCCACAGCCA 2805
Query 481 -------------------------------------------------------------------------- 480
Sbjct 2806 GCTCAGGATCCACCTCGGAATCAACAGATACCAAACCCACCAACATCCACGTCGGAAGATGTGAAGCCCAAAAC 2879
Query 481 -------------------------------------------------------------------------- 480
Sbjct 2880 CTTGGCCCTGGAGAAAACCATCAATCATCAGATGGAGTCTCCGGGGGAAAGGCGGAAGTCTATAAGCGGGAAGA 2953
Query 481 -------------------------------------------------------------------------- 480
Sbjct 2954 AACTGTGCTCCTCCTGCGGGCTCACTTTGGGTAAAGGTGCTGCGATGATCATCGAGACCCTGAATCTCTACTTT 3027
Query 481 -------------------------------------------------------------------------- 480
Sbjct 3028 CACATTCAGTGTTTCAGGTGCGGCATCTGTAAAGGACAGCTCGGAGATGCAGTAAGCGGGACAGACGTCAGGAT 3101
Query 481 ---------------------------------------------------------------------- 480
Sbjct 3102 TCGCAATGGTCTCCTAAACTGTACCGACTGCTACATGCGATCCAGAAGTGCCGGCCAGCCTACAACACTG 3171
