Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11674
- Subject:
- NM_001290995.1
- Aligned Length:
- 5448
- Identities:
- 1546
- Gaps:
- 3711
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTCGGGAGCCTCTGTGAAGGTCGCTGTTCGAGTGAGGCCCTTCAATTCTCGAGAGACCAGCAAGGAGTCCAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGCATCATTCAGATGCAAGGCAACTCGACCAGTATTATTAACCCAAAGAACCCAAAGGAAGCACCAAAGTCCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCAGCTTTGACTACTCCTACTGGTCCCACACCTCGCCTGAAGATCCCTGTTTTGCATCGCAGAATCGTGTGTAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AATGACATTGGAAAGGAAATGCTCTTACATGCCTTTGAAGGTTATAATGTCTGTATCTTTGCCTATGGGCAGAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTGCTGGGAAATCCTACACGATGATGGGGAAACAAGAAGAGAGCCAAGCTGGAATCATCCCACAGTTGTGTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGAACTCTTTGAGAAGATCAATGACAATTGTAATGAAGAAATGTCTTACTCTGTAGAGGTGAGCTACATGGAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTACTGTGAGAGAGTACGAGATTTACTGAATCCCAAAAACAAGGGTAACTTGCGTGTGCGTGAACACCCGCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCTTGGACCCTATGTGGAGGATCTGTCCAAGCTGGCGGTCACCTCCTACACTGACATCGCTGACCTGATGGATG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTGGGAACAAAGCCAGGACTGTGGCAGCTACCAACATGAATGAGACAAGCAGCCGTTCTCACGCTGTGTTCACC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATTGTCTTTACCCAGAAGAAACAGGATCCTGAGACGAACCTTTCTACTGAGAAGGTCAGTAAAATCAGCTTGGT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGATCTAGCAGGAAGTGAACGGGCTGATTCAACTGGTGCCAAAGGAACTCGATTAAAGGAAGGTGCAAATATCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATAAGTCCCTTACAACTTTGGGCAAAGTCATTTCGGCCTTGGCAGAGGTGGATAACTGCACAAGCAAGAGTAAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AAGAAGAAGAAAACTGATTTTATTCCTTATAGGGATTCTGTACTTACTTGGCTCCTTCGAGAAAATCTCGGTGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CAACTCCCGAACTGCAATGGTTGCTGCTCTGAGCCCAGCCGACATCAACTACGATGAAACTTTGAGCACACTGA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GATACGCAGATCGTGCAAAACAAATTAAATGCAATGCTGTTATCAATGAGGACCCGAATGCCAAGCTGGTTCGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GAGTTGAAGGAGGAAGTGACCCGACTGAAGGACCTTCTTCGTGCTCAGGGACTGGGAGATATTATTGATATTGA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CCCATTGATCGATGATTACTCTGGAAGTGGAGGCAAATATCTGAAAGATTTTCAGAACAATAAGCATAGGTACT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGCTAGCCTCTGAGAATCAACGCCCTGGCAATTTTTCCACAGCATCCATGGGGTCCCTCACTTCATCTCCATCT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TCATGCTCACTTAATAGTCAGGTGGGCTTAACATCTGTGACCAGTATTCAGGAGAGGATCATGTCTACACCTGG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGGGGAGGAAGCCATTGAACGTCTGAAGGAGTCAGAGAAGATCATTGCTGAGTTGAATGAAACCTGGGAAGAGA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AACTTCGTAAAACAGAGGCCATCAGAATGGAGAGAGAAGCCTTGTTGGCTGAGATGGGAGTTGCCATACGGGAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GATGGGGGGACACTTGGAGTTTTCTCTCCTAAAAAGACCCCACATCTTGTTAACCTCAATGAAGACCCATTAAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GTCGGAGTGTTTGCTCTATTACATCAAGGATGGAATTACAAGGGTTGGCCAGGCAGATGCTGAGCGGCGCCAGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ACATAGTGCTGAGTGGGGCCCACATTAAAGAGGAGCATTGTCTCTTTCGGAGTGAGAGGAGCAACACTGGTGAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTTATTGTGACCTTGGAGCCCTGTGAGCGCTCAGAAACATACGTGAATGGCAAGAGGGTGGCTCATCCTGTTCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GCTGCGCTCAGGGAACCGTATCATCATGGGTAAAAACCATGTTTTTCGTTTTAACCACCCTGAACAAGCGCGAG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CAGAAAGGGAAAAGACTCCCTCAGCTGAGACCCCCTCTGAGCCTGTGGACTGGACCTTTGCTCAGAGAGAGCTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CTCGAAAAACAAGGAATTGATATGAAACAGGAGATGGAAAAGAGGCTTCAGGAAATGGAGATCCTTTACAAAAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GGAGAAGGAGGAAGCCGATCTTCTCCTGGAGCAGCAGAGACTGGACTACGAGAGTAAATTGCAGGCCTTGCAGA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GGCAGGTTGAGACTCGATCTCTGGCTGCAGAGACAACGGAAGAGGAGGAAGAGGAGGAGGAAGTTCCTTGGACA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CAGCATGAATTTGAGTTGGCCCAGTGGGCGTTCCGGAAATGGAAGTCTCACCAGTTTACTTCATTAAGGGACTT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ACTCTGGGGCAATGCGGTGTACCTGAAGGAAGCCAATGCCATCAGTGTGGAACTAAAGAAAAAGGTGCAGTTCC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AGTTTGTTCTGCTGACTGACACGCTGTACTCCCCTGTGCCTCCTGAACTGCTTCCCTCGGAGATGGAGAAGACG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CACGAGGACAGACCTTTCCCTCGGACTGTGGTGGCGGTGGAGGTCCAGGATCTGAAGAATGGAGCAACACATTA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTGGTCTTTGGATAAACTCAAGCAGAGACTGGATCTGATGCGAGAGATGTATGACAGGGCAGGGGAGGTGGCCT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CCAGTGCCCAAGATGACAGCGAGACGACCATGACCGGCAGCGACCCATTCTACGATCGGTTCCACTGGTTCAAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CTTGTGGGAAGCTCCCCTATTTTCCACGGCTGTGTGAATGAGCGCCTTGCCGACCGCACACCCTCCCCCACTTT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TTCCACGGCCGATTCCGACATCACTGAACTGGCTGACGAGCAGCAGGATGCCATGGAGGACTTTGATGATGAGG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CATTCGTGGATGACACCGGCTCTGACGCAGGGACGGAAGAGGGATCAGAGCTCTTCAGTGATGGGCATGACCCA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TTTTACGACCGATCCCCTTGGTTCATTTTAGTAGGAAGGGCATTTGTGTACTTGAGCAACCTGCTGTATCCGGT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GCCCCTGATTCACAGGGTGGCCATTGTCAGTGAGAAGGGGGAAGTCCGGGGATTTCTTCGTGTGGCTGTGCAGG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CCATTGCAGCGGATGAAGAAGCCCCTGATTATGGCTCTGGAATCCGGCAGTCGGGAACAGCTAAAATATCTTTT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GATAATGAATACTTTAATCAGAGTGACTTCTCGTCAGCTGCAATGACTCGTTCTGGTCTGTCCTTGGAGGAGCT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GAGGATTGTGGAAGGTCAGGGCCAGAGTTCTGAAGTCATCAGTCCTCCAGAAGAAGTCAATCGAATGAACGACC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TGGATTTGAAGTCAGGCACTTTGCTGGATGGGAAGATGGTGATGGAAGGGTTTTCTGAAGAGATTGGTAACCAC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CTGAAGCTGGGCAGTGCCTTCACTTTCCGAGTCACTGTGCTCCAAGCCAGCGGGATCCTTCCAGAGTATGCAGA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CATCTTCTGTCAGTTCAACTTTTTGCATCGGCATGATGAAGCGTTCTCCACTGAACCCCTCAAGAACAATGGAA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GAGGAAGTCCCCTGGGCTTCTACCATGTACAGAACATTGCGGTGGAGGTCACAGAGTCGTTTGTGGACTACATC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 AAAACCAAGCCCATTGTATTCGAGGTCTTTGGGCACTACCAGCAGCACCCACTCCATCTGCAAGGACAAGATCT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TAACAGTCCACCTCAGCCATCTCGGAGATTCTTCCCCCCACCCATGCCACTCTCCAAGCCAGTTCCAGCTACTA 3700
Query 1 -----------ATGAGCAAAACCAGCCTTGGCCAGAGCATGAGCAAGTATGACCTCCTGGTTTGGTTTGAGATC 63
||||.||||||||.||||||.||.||||||||||||||.|||||.||||||||||||||||||
Sbjct 3701 AGTTAAACACCATGAACAAAACCACCCTTGGGCAAAGCATGAGCAAGTACGACCTTCTGGTTTGGTTTGAGATC 3774
Query 64 AGTGAACTGGAGCCTACAGGAGAGTATATCCCAGCTGTGGTTGACCACACAGCAGGCTTGCCTTGCCAGGGGAC 137
|||||||||||||||||.|||||||||||.|||||||||||||||||.||.||||||.||||.|||||||||||
Sbjct 3775 AGTGAACTGGAGCCTACTGGAGAGTATATTCCAGCTGTGGTTGACCATACTGCAGGCCTGCCCTGCCAGGGGAC 3848
Query 138 ATTTTTGCTTCATCAGGGCATCCAGCGAAGGATCACAGTGACCATTATCCATGAGAAGGGGAGCGAGCTCCATT 211
|||||||||.||.|||||||||||||||.|||||||||||||.||.|||||.||||||||.||.||||||||.|
Sbjct 3849 ATTTTTGCTGCACCAGGGCATCCAGCGACGGATCACAGTGACTATCATCCACGAGAAGGGCAGTGAGCTCCACT 3922
Query 212 GGAAAGATGTTCGTGAACTGGTGGTAGGTCGTATTCGGAATAAGCCTGAGGTGGATGAAGCTGCAGTTGATGCC 285
||||||||||.|||||.||||||||||||||.|||.|||||||.||.|||||.||||||||||||||||||||.
Sbjct 3923 GGAAAGATGTCCGTGAGCTGGTGGTAGGTCGGATTAGGAATAAACCGGAGGTAGATGAAGCTGCAGTTGATGCT 3996
Query 286 ATCCTCTCCCTAAATATTATTTCTGCCAAGTACCTGAAGTCTTCCCACAACTCTAGCAGGACCTTCTACCGCTT 359
.|.||.|||||.||.||.||.|||||.||||.|||||||.||.||||||.|||.|||||||||||||||||.||
Sbjct 3997 GTTCTTTCCCTGAACATCATCTCTGCTAAGTCCCTGAAGGCTGCCCACAGCTCCAGCAGGACCTTCTACCGTTT 4070
Query 360 TGAGGCTGTGTGGGATAGCTCTCTGCATAACTCCCTTCTTCTGAACCGAGTGACACCCTATGGAGAAAAGATCT 433
.|||||.||.|||||.|||||.||.|||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 4071 CGAGGCAGTATGGGACAGCTCCCTACATAACTCCCTCCTTCTGAACCGAGTGACACCCTATGGAGAAAAGATCT 4144
Query 434 ACATGACCTTGTCGGCCTACCTAGAGCTGGATCATTGCATCCAGCCGGCTGTCATCACCAAGGATGTGTGCATG 507
||||||||||.||.||.||.||.|||.||||||||||||||||||||||.||||||||.|||||||||||||||
Sbjct 4145 ACATGACCTTATCTGCTTATCTGGAGTTGGATCATTGCATCCAGCCGGCCGTCATCACTAAGGATGTGTGCATG 4218
Query 508 GTCTTCTACTCCCGAGATGCCAAGATCTCACCACCACGCTCTCTGCGTAGCCTCTTTGGCAGCGGCTACTCAAA 581
||||||||.||||||||||||||||||||||||||.||.||||||||.|.|||||||||.||.|||||||||||
Sbjct 4219 GTCTTCTATTCCCGAGATGCCAAGATCTCACCACCGCGTTCTCTGCGAAACCTCTTTGGTAGTGGCTACTCAAA 4292
Query 582 GTCACCAGATTCGAATCGAGTCACTGGCATTTACGAACTCAGCTTATGCAAAATGTCAGACACAGGTAGTCCAG 655
|||||||||.||.||.|||||.|||||.||.||.||.||.|||||||||||||||.||||.||.||.||.||||
Sbjct 4293 GTCACCAGACTCCAACCGAGTGACTGGGATCTATGAGCTGAGCTTATGCAAAATGGCAGATACTGGAAGCCCAG 4366
Query 656 GTATGCAGAGAAGGAGAAGAAAAATCTTAGATACGTCAGTGGCATATGTGCGGGGAGAAGAGAACTTAGCAGGC 729
|.||||||||..||||.||||||.||||.|||||.|||||||||||||||||||||||.||||||.||||.|||
Sbjct 4367 GCATGCAGAGGCGGAGGAGAAAAGTCTTGGATACCTCAGTGGCATATGTGCGGGGAGAGGAGAACCTAGCGGGC 4440
Query 730 TGGCGGCCCCGTGGAGACAGCCTCATCCTTGAGCACCAGTGGGAGCTGGAGAAGCTGGAGCTCCTACATGAGGT 803
|||||.||.|||||||||||||||||.||.||.|||||||||||||||||||||||||||||.||.||||||||
Sbjct 4441 TGGCGACCTCGTGGAGACAGCCTCATTCTGGAACACCAGTGGGAGCTGGAGAAGCTGGAGCTGCTGCATGAGGT 4514
Query 804 GGAAAAAACCCGCCACTTTTTGCTGCTGCGTGAGAGACTTGGTGACAGCATCCCCAAATCCCTGAGCGACTCGT 877
|||||||||.||||||||.||||||||.||.||||||||||||||||||.||||.||.||.|||||.|||||..
Sbjct 4515 GGAAAAAACTCGCCACTTCTTGCTGCTTCGGGAGAGACTTGGTGACAGCGTCCCTAAGTCTCTGAGTGACTCAC 4588
Query 878 TATCCCCCAGCCTCAGCAGTGGGACCCTCAGCACCTCCACCAGTATCTCCTCTCAGATCTCAACCACTACCTTT 951
|.|||||||||||.||||||||.|||||.||||||||||||||.|||||||||||||||||||||||.||||||
Sbjct 4589 TGTCCCCCAGCCTGAGCAGTGGAACCCTTAGCACCTCCACCAGCATCTCCTCTCAGATCTCAACCACCACCTTT 4662
Query 952 GAAAGCGCCATCACACCTAGCGAGAGCAGTGGCTATGATTCAGGAGACATCGAAAGCCTGGTGGACCGAGAGAA 1025
|||||||||||||||||.|||||||||||||||||.||.||.|.||||.|.|||||||||||.|||||.|||||
Sbjct 4663 GAAAGCGCCATCACACCGAGCGAGAGCAGTGGCTACGACTCGGCAGACGTTGAAAGCCTGGTCGACCGGGAGAA 4736
Query 1026 AGAGCTGGCTACCAAGTGCCTGCAACTTCTCACCCACACTTTCAACAGAGAATTCAGCCAGGTGCACGGCAGCG 1099
||||||||||||.|||||||||||.|||||||||||||||||||||.||||||||||||||||||||||||||.
Sbjct 4737 AGAGCTGGCTACAAAGTGCCTGCAGCTTCTCACCCACACTTTCAACCGAGAATTCAGCCAGGTGCACGGCAGCA 4810
Query 1100 TCAGTGACTGTAAGTTGTCTGATATCTCTCCAATTGGACGGGATCCCTCTGAGTCCAGTTTCAGCAGTGCCACC 1173
||||||||||||||||||||||.||||||||||||||||||||.|||||||.||||||||||||||||.|||||
Sbjct 4811 TCAGTGACTGTAAGTTGTCTGACATCTCTCCAATTGGACGGGACCCCTCTGTGTCCAGTTTCAGCAGTTCCACC 4884
Query 1174 CTCACTCCCTCCTCCACCTGTCCCTCTCTGGTAGACTCTAGGAGCAACTCTCTGGATCAGAAGACCCCAGAAGC 1247
|||||.|||||||||||.||.|||||..||||.|||||.|||||||.||||.||||||||||||||||||||||
Sbjct 4885 CTCACGCCCTCCTCCACTTGCCCCTCCTTGGTGGACTCCAGGAGCAGCTCTATGGATCAGAAGACCCCAGAAGC 4958
Query 1248 CAATTCCCGGGCCTCTAGTCCCTGCCCAGAATTTGAACAGTTTCAGATTGTCCCAGCTGTGGAAACACCATATT 1321
|||.||.||.|||||.||||||||||.|||||||||||||||||||||.||||||.|||||||.|||||.||||
Sbjct 4959 CAACTCTCGTGCCTCCAGTCCCTGCCAAGAATTTGAACAGTTTCAGATCGTCCCAACTGTGGAGACACCCTATT 5032
Query 1322 TGGCCCGAGCAGGAAAAAACGAATTTCTCAATCTTGTTCCAGATATTGAAGAAATTAGACCAAGCTCAGTGGTC 1395
|||||||||||||.||.||.|||||||||||||||||||||||.|||||||||.|.|||.|..|.||||||||.
Sbjct 5033 TGGCCCGAGCAGGGAAGAATGAATTTCTCAATCTTGTTCCAGACATTGAAGAAGTCAGAGCGGGATCAGTGGTA 5106
Query 1396 TCTAAGAAAGGATACCTTCATTTCAAGGAGCCTCTTTACAGTAACTGGGCTAAACATTTTGTTGTCGTCCGTCG 1469
|||||||||||||||||.||||||||.|||||.||||.|||||||||||||||||||||.|||||.||.|||||
Sbjct 5107 TCTAAGAAAGGATACCTGCATTTCAAAGAGCCACTTTCCAGTAACTGGGCTAAACATTTCGTTGTGGTTCGTCG 5180
Query 1470 GCCTTATGTCTTCATCTATAACAGTGACAAAGACCCTGTGGAGCGTGGAATCATTAACCTGTCCACAGCACAGG 1543
.|||||.|||||||||||||||||||||||||||||.||.||||||||.||||||||||||||.||||||||||
Sbjct 5181 CCCTTACGTCTTCATCTATAACAGTGACAAAGACCCAGTAGAGCGTGGCATCATTAACCTGTCTACAGCACAGG 5254
Query 1544 TGGAGTACAGTGAGGACCAGCAGGCCATGGTGAAGACACCAAACACATTTGCTGTCTGCACAAAGCACCGTGGG 1617
||||||||||.|||||||||||||||||||||||||||||.||.||.||||||||.||||||||||||||||||
Sbjct 5255 TGGAGTACAGCGAGGACCAGCAGGCCATGGTGAAGACACCTAATACTTTTGCTGTATGCACAAAGCACCGTGGG 5328
Query 1618 GTCCTTTTGCAGGCCCTCAATGACAAAGACATGAACGACTGGTTGTATGCCTTCAACCCACTTCTAGCTGGCAC 1691
||||||.||||.||.||||||||||||||||||||.||||||||.||||||||.|||||||||||.||||||||
Sbjct 5329 GTCCTTCTGCAAGCTCTCAATGACAAAGACATGAATGACTGGTTATATGCCTTTAACCCACTTCTGGCTGGCAC 5402
Query 1692 AATACGGTCAAAGCTTTCCCGCAGATGCCCGAGCCAGTCGAAATAC 1737
||||.|||||||.||.||.||||||||||||||||||.|.||.|||
Sbjct 5403 AATAAGGTCAAAACTCTCTCGCAGATGCCCGAGCCAGCCAAAGTAC 5448
