Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11752
Subject:
NM_019501.3
Aligned Length:
1268
Identities:
766
Gaps:
391

Alignment

Query    1  ATGGCCTCGCGCTGGTGGCGGTGGCGGCGCGGCTGCTCCTGGAAGCCG---GCGG-CGCGGAGCCC----CGGG  66
            |||||...||||||||.|.|.||||||||.|||||||||||||.||||   |||| || |||||||    ||||
Sbjct    1  ATGGCTATGCGCTGGTCGTGCTGGCGGCGTGGCTGCTCCTGGAGGCCGACCGCGGTCG-GGAGCCCGCGGCGGG  73

Query   67  CCCGGCTCCCCCGGCCGTGCGGTACCGTTGGGGCCGAGCGCCGCTGCCGAAGTCCGCGCGCAGGTTCATAGGCG  140
            ..||    .||.|||.|||.||..||..|.||..|..|.|||||..|.||...|||||||              
Sbjct   74  AACG----ACCTGGCTGTGTGGAGCCTCTCGGAACACGTGCCGCCTCGGACACCCGCGCG--------------  129

Query  141  GAAGGGACTTGACTTGTCTCAGATACCCTATATTAATCTTGTGAAGCATTTAACATCTGCCTGTCCAAATGTAT  214
                               ||||||||||||.|||.||||.|||||..|||||..|||||||..||||  .|||
Sbjct  130  -------------------CAGATACCCTATTTTAGTCTTATGAAGATTTTAATGTCTGCCTCCCCAA--CTAT  182

Query  215  G--TCGTATATCACGGTTTCATCACACAACCCCAGACA-------------GTAAAACACACAGTGGTGAAAAA  273
            |  |.|||||||||.|||||||||.|..||.|||| ||             ||.||||.||.||||||||.|||
Sbjct  183  GCATAGTATATCACAGTTTCATCAAAGGACACCAG-CAATGTGCAGTTGTCGTCAAACTCAGAGTGGTGAGAAA  255

Query  274  TACACCGATCCTTTCAAACTCGGTTGGAGAGACTTGAAAGGTCTGTATGAGGACATTAGAAAGGAACTGCTTAT  347
            ||||..||||||||.|||||.||.||||||||||||||||||||||||||.||||||||||||||.||||..||
Sbjct  256  TACAGTGATCCTTTTAAACTTGGCTGGAGAGACTTGAAAGGTCTGTATGAAGACATTAGAAAGGAGCTGCACAT  329

Query  348  ATCAACATCAGAACTTAAGGAAATGTCTGAGTACTACTTTGATGGGAAAGGGAAAGCCTTTCGACCAATTATTG  421
            .||.||...||||||.|||||.|||||.||.||||||||.|||||.|||||.|||||||||.||||.|||||||
Sbjct  330  CTCCACCAGAGAACTAAAGGACATGTCCGAATACTACTTCGATGGCAAAGGAAAAGCCTTTAGACCGATTATTG  403

Query  422  TGGCGCTAATGGCCCGAGCATGCAATATTCATCATAACAACTCCCGACATGTGCAAGCCAGCCAGCGCGCCATA  495
            |||.|||||||||||||||.||.||||||||||||||.||..|||||.|..|||||||||||||||||.|||||
Sbjct  404  TGGTGCTAATGGCCCGAGCGTGTAATATTCATCATAATAATGCCCGAGAGATGCAAGCCAGCCAGCGCTCCATA  477

Query  496  GCCTTAATTGCAGAAATGATCCACACTGCTAGTCTGGTTCACGATGACGTTATTGACGATGCAAGTTCTCGAAG  569
            ||||||.||||||||||||||||||||||||.|||||||||.||||||||||||||.|||||||||||||||||
Sbjct  478  GCCTTAGTTGCAGAAATGATCCACACTGCTACTCTGGTTCATGATGACGTTATTGATGATGCAAGTTCTCGAAG  551

Query  570  AGGAAAACACACAGTTAATAAGATCTGGGGTGAAAAGAAGGCTGTTCTTGCTGGAGATTTAATTCTTTCTGCAG  643
            |||||||||.|||||||||||.|||||||||||.||.|||||||||||||||||||||||||||||||||||||
Sbjct  552  AGGAAAACATACAGTTAATAAAATCTGGGGTGAGAAAAAGGCTGTTCTTGCTGGAGATTTAATTCTTTCTGCAG  625

Query  644  CATCTATAGCTCTGGCACGAATTGGAAATACAACTGTTATATCTATTTTAACCCAAGTTATTGAAGATTTGGTG  717
            |.|||.|||||||||||||.||||||||.|||.|||||.|||||||.|||.|||||||||||||||||||||||
Sbjct  626  CGTCTGTAGCTCTGGCACGGATTGGAAACACAGCTGTTGTATCTATGTTAGCCCAAGTTATTGAAGATTTGGTG  699

Query  718  CGTGGTGAATTTCTTCAGCTCGGGTCAAAAGAAAATGAGAATGAAAGATTTGCACACTACCTTGAGAAGACATT  791
            ||||||||||||||||||||.||||||||||||||||||||||||||.|||||.|||||||||||||||||.||
Sbjct  700  CGTGGTGAATTTCTTCAGCTAGGGTCAAAAGAAAATGAGAATGAAAGGTTTGCCCACTACCTTGAGAAGACCTT  773

Query  792  CAAGAAGACCGCCAGCCTGATAGCCAACAGTTGTAAAGCAGT--------------------------------  833
            |||||||||.||||||||||||||||||||||||||||||||                                
Sbjct  774  CAAGAAGACAGCCAGCCTGATAGCCAACAGTTGTAAAGCAGTCTCTGTCCTGGGTTGCCCTGACCCAGTGGTGC  847

Query  834  --------------------------------------------------------------------------  833
                                                                                      
Sbjct  848  ATGAGATAGCCTATCAGTATGGGAAAAATGTTGGAATAGCTTTTCAGCTCATAGATGATGTATTGGATTTCACC  921

Query  834  --------------------------------------------------------------------------  833
                                                                                      
Sbjct  922  TCATGTTCTGACCAGATGGGCAAGCCAACATCTGCAGACCTGAAGCTAGGCATAGCCACTGGCCCTGTCTTGTT  995

Query  834  -----------ATTTCCCAGAAATGAATGCTATGATCATGCGACGGTTCAGTTTGCCTGGAGATGTAGACAGAG  896
                       |.|||||||||||||||||||||||.|||.||||||||||||||||.||||||||.|||||||
Sbjct  996  TGCTTGCCAGCAGTTCCCAGAAATGAATGCTATGATAATGAGACGGTTCAGTTTGCCAGGAGATGTGGACAGAG  1069

Query  897  CTCGACAGTATGTACTACAGAG----------------------------------------------------  918
            |.||||||||||||.|||||||                                                    
Sbjct 1070  CACGACAGTATGTATTACAGAGTGATGGCGTGCAGCAAACAACCTACCTCGCCCAGCAGTACTGCCACAAAGCT  1143

Query  919  --------------------------------------------------------------------------  918
                                                                                      
Sbjct 1144  GTGAGAGAGATCAGGAAGCTTAGACCATCTACAGAAAGGGACGCCCTCATTCAGCTTTCAGAAAGTGTGCTCAC  1217

Query  919  ----------  918
                      
Sbjct 1218  CAGAGATAAA  1227