Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11816
Subject:
NM_001198793.1
Aligned Length:
2121
Identities:
1053
Gaps:
1065

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGACTGCCACTCTCCGCCCCTACCTGAGTGCCGTGCGGGCCACATTGCAGGCTGCCCTCTGCCTGGAGAACTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTCCTCCCAGGTTGTGGAACGACACAACAAGCCGGAAGTGGAAGTCAGGAGTAGCAAAGAGCTCCTGTTACAAC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTGTGACCATCAGCAGGAATGAGAAGGAAAAGGTTCTGATTGAGGGCTCCATCAACTCTGTCCGGGTCAGCATT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCTGTGAAACAGGCTGATGAGATCGAGAAGATTTTGTGCCACAAGTTCATGCGCTTCATGATGATGCGAGCAGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GAACTTCTTTATCCTTCGAAGGAAGCCTGTGGAGCAGAAGAAGATCTTTACAATCCAAGGCTGCTACCCGGTGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCCGGTGTCTCTTGCGCCGGAGGGGCTGGGTGGAGAAGAAGATGGTCCATCGCTCAGGCCCCACCCTGCTGCCA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCCCAGAAGGATCTGGATAGCTCAGCGATGGGTGACAGTGACACCACTGAGGATGAGGATGAAGATGAGGACGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGAGTTCCAGCCATCACAGCTGTTCGACTTCGATGATTTACTGAAATTTGATGACCTAGATGGAACACATGCTC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TGATGGTGGGTCTATGTCTCAATCTCCGGAATTTGCCGTGGTTTGATGAGGTTGATGCCAACTCCTTCTTCCCA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CGCTGCTACTGCCTGGGGGCTGAGGATGACAAAAAAGCCTTCATAGGAGACAAGCAGCCCAAGAAACAGGAGAA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AAACCCAGTGTTGGTGTCCCCAGAGTTTGTGGATGAAGCTCTGTGTGCGTGCGAGGAGTACCTTAGCAACTTGG  814

Query    1  -----ATGGACATCGACAAGGACCTGGAGGCCCCGCTGTACCTCACCCCCGAGGGCTGGTCCCTCTTCCTCCAG  69
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CCCACATGGACATCGACAAGGACCTGGAGGCCCCGCTGTACCTCACCCCCGAGGGCTGGTCCCTCTTCCTCCAG  888

Query   70  CGCTACTACCAAGTGGTCCACGAAGGGGCAGAACTCAGGCACCTCGACACTCAGGTCCAGCGCTGTGAGGACAT  143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CGCTACTACCAAGTGGTCCACGAAGGGGCAGAACTCAGGCACCTCGACACTCAGGTCCAGCGCTGTGAGGACAT  962

Query  144  CCTGCAGCAGCTGCAGGCCGTGGTACCCCAGATAGACATGGAAGGGGATCGCAACATCTGGATCGTGAAGCCAG  217
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CCTGCAGCAGCTGCAGGCCGTGGTACCCCAGATAGACATGGAAGGGGATCGCAACATCTGGATCGTGAAGCCAG  1036

Query  218  GAGCCAAGTCCCGTGGACGAGGCATCATGTGCATGGACCACCTGGAGGAGATGCTGAAGCTGGTGAACGGCAAC  291
            |||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GAGCCAAGTCCCGCGGACGAGGCATCATGTGCATGGACCACCTGGAGGAGATGCTGAAGCTGGTGAACGGCAAC  1110

Query  292  CCCGTGGTGATGAAGGACGGCAAGTGGGTGGTGCAGAAGTATATTGAGCGGCCCCTCCTCATCTTTGGCACCAA  365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CCCGTGGTGATGAAGGACGGCAAGTGGGTGGTGCAGAAGTATATTGAGCGGCCCCTCCTCATCTTTGGCACCAA  1184

Query  366  GTTTGACCTCAGACAGTGGTTCCTGGTAACTGACTGGAACCCACTTACCGTGTGGTTCTACCGCGACAGCTATA  439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GTTTGACCTCAGACAGTGGTTCCTGGTAACTGACTGGAACCCACTTACCGTGTGGTTCTACCGCGACAGCTATA  1258

Query  440  TCCGCTTTTCCACGCAGCCCTTCTCCCTGAAGAACCTGGACAACTCAGTGCACCTGTGCAACAACTCCATCCAG  513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TCCGCTTTTCCACGCAGCCCTTCTCCCTGAAGAACCTGGACAACTCAGTGCACCTGTGCAACAACTCCATCCAG  1332

Query  514  AAGCACCTGGAGAACTCATGCCATCGGCATCCACTGCTTCCGCCAGACAACATGTGGTCTAGCCAGAGGTTCCA  587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AAGCACCTGGAGAACTCATGCCATCGGCATCCACTGCTTCCGCCAGACAACATGTGGTCTAGCCAGAGGTTCCA  1406

Query  588  GGCCCACCTGCAGGAGATGGGTGCCCCAAATGCTTGGTCCACCATCATCGTGCCTGGCATGAAGGATGCTGTGA  661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GGCCCACCTGCAGGAGATGGGTGCCCCAAATGCTTGGTCCACCATCATCGTGCCTGGCATGAAGGATGCTGTGA  1480

Query  662  TCCACGCACTTCAGACCTCCCAGGACACCGTGCAATGTCGGAAGGCCAGCTTTGAGCTCTATGGCGCTGACTTC  735
            ||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TCCACGCACTTCAGACCTCCCAGGACACCGTGCAGTGTCGGAAGGCCAGCTTTGAGCTCTATGGCGCTGACTTC  1554

Query  736  GTGTTCGGGGAGGACTTCCAGCCCTGGCTGATTGAGATCAACGCCAGCCCCACGATGGCACCCTCCACAGCAGT  809
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GTGTTCGGGGAGGACTTCCAGCCCTGGCTGATTGAGATCAACGCCAGCCCCACGATGGCACCCTCCACAGCAGT  1628

Query  810  CACTGCCCGGCTCTGTGCTGGCGTGCAAGCTGACACCCTGCGCGTGGTCATTGACCGGAGGCTGGACCGCAACT  883
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct 1629  CACTGCCCGGCTCTGTGCTGGCGTGCAAGCTGACACCCTGCGCGTGGTCATTGACCGGATGCTGGACCGCAACT  1702

Query  884  GTGACACAGGAGCCTTTGAGCTCATCTATAAGCAGCCTGCTGTGGAGGTGCCTCAATATGTGGGCATCCGGCTC  957
            |||||||||||||||||||||||||||||||||                                         
Sbjct 1703  GTGACACAGGAGCCTTTGAGCTCATCTATAAGC-----------------------------------------  1735

Query  958  CTGGTAGAGGGCTTCACCATCAAGAAGCCCATGGCGATGTGTCATCGGCGGATGGGGGTCCGCCCAGCAGTCCC  1031
                                                                                      
Sbjct 1736  --------------------------------------------------------------------------  1735

Query 1032  TCTGCTGACCCAGCGAGGCTCTGGGGAAGCCCGTCACCACTTCCCCAGCCTCCACACCAAGGCCCAGCTGCCTT  1105
                                       |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736  ---------------------------AGCCCGTCACCACTTCCCCAGCCTCCACACCAAGGCCCAGCTGCCTT  1782

Query 1106  CTCCCCATGTACTCCGACACCAGGGCCAGGTCCTCAGACGACAGCACAGCAAGCTGGTGGGCACTAAGGCCCTG  1179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1783  CTCCCCATGTACTCCGACACCAGGGCCAGGTCCTCAGACGACAGCACAGCAAGCTGGTGGGCACTAAGGCCCTG  1856

Query 1180  TCGACCACAGGCAAGGCCTTGAGGACTCTACCCACGGCTAAGGTCTTCATTTCCCTCCCACCGAACCTTGATTT  1253
            |||||||||||||||||||                                                       
Sbjct 1857  TCGACCACAGGCAAGGCCT-------------------------------------------------------  1875

Query 1254  CAAGGTGGCACCCAGCATCCTGAAGCCAAGAAAGGTGGGCCTCGACCTG  1302
                                                             
Sbjct 1876  -------------------------------------------------  1875

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