Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11838
Subject:
XR_001744630.1
Aligned Length:
1786
Identities:
635
Gaps:
1107

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CAAGGCTCCTCAGCCGAGCGCCGAGCGGTCGATCGCCGTAGCTCCCGCAGCCTGCGATCTCCAGTCTGTGGCTC  74

Query    1  ------------------------------ATGGAGCATGCCTTTACCCCGTTGGAGCCCCTGCTTTCCACTGG  44
                                          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CTACCAGCCATTGTAGGCCAATAATCCGTTATGGAGCATGCCTTTACCCCGTTGGAGCCCCTGCTTTCCACTGG  148

Query   45  GAATTTGAAGTACTGCCTTGTAATTCTTAATCAGCCTTTGGACAACTATTTTCGTCATCTTTGGAACAAAGCTC  118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GAATTTGAAGTACTGCCTTGTAATTCTTAATCAGCCTTTGGACAACTATTTTCGTCATCTTTGGAACAAAGCTC  222

Query  119  TTTTAAGAGCCTGTGCCGATGGAGGTGCCAACCGCTTATATGATATCACCGAAGGAGAGAGAGAAAGCTTTTTG  192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TTTTAAGAGCCTGTGCCGATGGAGGTGCCAACCGCTTATATGATATCACCGAAGGAGAGAGAGAAAGCTTTTTG  296

Query  193  CCTGAATTCATCAATGGAGACTTTGATTCTATTAGGCCTGAAGTCAGAGAATACTATGCTACT-----------  255
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
Sbjct  297  CCTGAATTCATCAATGGAGACTTTGATTCTATTAGGCCTGAAGTCAGAGAATACTATGCTACTAAGGTGTTAAT  370

Query  256  -------------------------------------------------------------------AAGGGAT  262
                                                                               |||||||
Sbjct  371  TTTCTCAATATTGGGCACATCTTTCAAAGAAGAGAAGGAACCTTTCTCAGGAAGGAGGGAAGAGAAAAAGGGAT  444

Query  263  GTGAGCTCATTTCAACTCCTGATCAAGACCACACTGACTTTACTAAGTGCCTTAAAATGCTCCAAAAGAAGATA  336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GTGAGCTCATTTCAACTCCTGATCAAGACCACACTGACTTTACTAAGTGCCTTAAAATGCTCCAAAAGAAGATA  518

Query  337  GAAGAAAAAGACTTAAAGGTTGATGTGATCGTGACACTGGGAGGCCTTGCTGGGCGTTTTGACCAGATTATGGC  410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GAAGAAAAAGACTTAAAGGTTGATGTGATCGTGACACTGGGAGGCCTTGCTGGGCGTTTTGACCAGATTATGGC  592

Query  411  ATCTGTGAATACCTTGTTCCAAGCGACTCACATCACTCCTTTTCCAATTATAATAATCCAAGAGGAATCGCTGA  484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ATCTGTGAATACCTTGTTCCAAGCGACTCACATCACTCCTTTTCCAATTATAATAATCCAAGAGGAATCGCTGA  666

Query  485  TCTACCTGCTCCAACCAGGAAAGCACAGG--TTGCATGTAGACACTGGAATGGAGGGTGATTGGTGTGGCCTTA  556
            |||||||||||||||||||      |.||  |||         |||..||   ||.||.||         ||||
Sbjct  667  TCTACCTGCTCCAACCAGG------CTGGCTTTG---------ACTTCAA---AGAGTTAT---------CTTA  713

Query  557  TTCCTGTT---------GGACAGCCTTGTAGTCAGGTTACAACC----ACAGGCCTCAAG--------TGGAAC  609
                 |||         ||.|||      || ||||    ||||    |.|.|..|||.|        ||||| 
Sbjct  714  -----GTTCGGAAAAGAGGCCAG------AG-CAGG----AACCTGTGAAATGATTCATGGGAGAAGATGGAA-  770

Query  610  CTCACAAATGATGTGCT----TGCTTTT--------GGAA-----------CATTGGTCAGTACTTCCA-----  655
               ..||||||||.|.|    |||.|.|        |.||           |||.||..|||.|||..|     
Sbjct  771  ---GTAAATGATGAGTTCATGTGCCTCTAGTCTCCAGTAATGGCATAAATCCATAGGGAAGTTCTTTAATGTCA  841

Query  656  ------ATACCTAC----GACGGGTC-----TGG---------TGTTGTGA----------CTGTGGAAACTGA  695
                  ||.|||.|    |.|..|||     |.|         |.||.|||          |||.||||  |||
Sbjct  842  GCGTGTATGCCTGCCTGTGTCAAGTCACATATAGGCTAGCACATATTATGAATTAAGAAATCTGGGGAA--TGA  913

Query  696  CCACCCACTCCTCTGGACCA--TGGCCA---TCAAAAGC-----------------------------------  729
            .||...|.||||.|..| ||  ||..||   |||||||.                                   
Sbjct  914  ACAAAAATTCCTTTATA-CAGTTGTTCATTTTCAAAAGATGTCATATAGACTTGAAGATACAGGAGGAAAATAT  986

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct  987  TGCTCTCATTTAACCATAAAAACTGTATTTGCATTTTTATAAACACAAAGACCATTCACATATGGCTAAGCACC  1060

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1061  TTTTTGGAACAAGAGAAAACATGGTTAATTGATTGTGGGCTAAGGCCTATCTGTGACTTCTCAAGTCCACAAAC  1134

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1135  GAGTTTATTCCCAGACTGAAAATTTTAAGGCCTGCTGATTCTTTAAAATAATGAGGAAGGCAATGAATATATAG  1208

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1209  CATGCTTACTACTATGTCATTTAAATCATTGGATTTTATAACAGCCCTCCTCTCCCTGGGAGAATAAAACTTAG  1282

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1283  CATGTATATGTGCTGTTTCCTTTGCATTATACGATACAAGTTGAAGAATACTCTCTTAGGGAGTTAATATCACA  1356

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1357  AATTGAAAAACACTTCCTTCTTTCCTTCGCCATTCTTAACAGAAGTCACCTAGGAGCACCAAACATGCTAACGT  1430

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1431  ATTCAGCTAGGCACTGCCAAACCATTAAGCCGGCCACAGACAGAGGAAAGAAAATCATCAATTAAGAGACAAGA  1504

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1505  ACTAACTGTAACACACTGAAAATAAGATAGCTCAAGAACACAGGAATTCCTCTTTGATAAGTGATGGAGAAGTC  1578

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1579  GCACTCTAACAACAGGTCTCATTGTCAGAAACACCGTTATCAGATGCAGAAGTACAGAGATCTGGACAAGGGAA  1652

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1653  AGCACAGGTTGCATGTAGACACTGGAATGGAGGGTGATTGGTGTGGCCTTATTCCTGTTGGACAGCCTTGTATG  1726

Query  730  ----------  729
                      
Sbjct 1727  CAGGTTACAA  1736

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