Nucleotide Global Alignment

Description

• Query: ccsbBroad304_11921
• Subject: NM_001144907.2
• Aligned Length: 1212
• Identities: 850
• Gaps: 288

Alignment

Query    1  ATGGCCTCAGCCTGCCCAGGCTCTGATTTCACGTCTATCCATTCAGAGGAGGAACAGCTGAGAGGCCT--TGGA  72
            |||     ||             |||.|.||.|  .|.|||   || ||.|.|.||||||   |||||  ||||
Sbjct    1  ATG-----AG-------------TGACTCCAAG--GAACCA---AG-GGTGCAGCAGCTG---GGCCTCCTGGA  47

Query   73  --------------------------------TTCCGACAGAC-------TCGAG--GAT--------ACAAGA  97
                                            ||||.|.||||       ||.||  |||        ||||||
Sbjct   48  AGAAGATCCAACAACCAGTGGCATCAGACTTTTTCCAAGAGACTTTCAATTCCAGCAGATACATGGCCACAAGA  121

Query   98  GCT-TA--------------------GCAGTGTCCAAGGTCCCCAGCTCCATAAGTCAGGAACAATCCAGGCAA  150
            ||| ||                    .|||||||||||||||||||||||.|||||||||||||||||..||||
Sbjct  122  GCTCTACAGTTCCTTTTCTTCTTGGCCCAGTGTCCAAGGTCCCCAGCTCCCTAAGTCAGGAACAATCCGAGCAA  195

Query  151  GACGCGATCTACCAGAACCTGACCCAGCTTAAAGCTGCAGTGGGTGAGCTCTCAGAGAAATCCAAGCTGCAGGA  224
            |||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  196  GACGCAATCTACCAGAACCTGACCCAGCTTAAAGCTGCAGTGGGTGAGCTCTCAGAGAAATCCAAGCTGCAGGA  269

Query  225  GATCTACCAGGAGCTGACCCAGCTGAAGGCTGCAGTGGGTGAGCTTCCAGAGAAATCTAAGCTGCAGGAGATCT  298
            |||||||||||||||||||||||||||||||||||||||||||.|.|||||||||||.||||||||||||||||
Sbjct  270  GATCTACCAGGAGCTGACCCAGCTGAAGGCTGCAGTGGGTGAGTTGCCAGAGAAATCCAAGCTGCAGGAGATCT  343

Query  299  ACCAGGAGCTGACCCGGCTGAAGGCTGCAGTGGGTGAGCTTCCAGAGAAATCTAAGCTGCAGGAGATCTACCAG  372
            ||||||||||||||||||||||||||||||||||||||.|.|||||||||||.|||||||||||||||||||||
Sbjct  344  ACCAGGAGCTGACCCGGCTGAAGGCTGCAGTGGGTGAGTTGCCAGAGAAATCCAAGCTGCAGGAGATCTACCAG  417

Query  373  GAGCTGACCTGGCTGAAGGCTGCAGTGGGTGAGCTTCCAGAGAAATCTAAGATGCAGGAGATCTACCAGGAGCT  446
            |||||||||.|||||||||||||||||||||||.|.|||||||||||.|||.||||||||||||||||||||||
Sbjct  418  GAGCTGACCCGGCTGAAGGCTGCAGTGGGTGAGTTGCCAGAGAAATCCAAGCTGCAGGAGATCTACCAGGAGCT  491

Query  447  GACTCGGCTGAAGGCTGCAGTGGGTGAGCTTCCAGAGAAATCTAAGCAGCAGGAGATCTACCAGGAGCTGACCC  520
            |||                                                |||                    
Sbjct  492  GAC------------------------------------------------GGA--------------------  497

Query  521  GGCTGAAGGCTGCAGTGGGTGAGCTTCCAGAGAAATCTAAGCAGCAGGAGATCTACCAGGAGCTGACCCGGCTG  594
                                                                                  ||||
Sbjct  498  ----------------------------------------------------------------------GCTG  501

Query  595  AAGGCTGCAGTGGGTGAGCTTCCAGAGAAATCTAAGCAGCAGGAGATCTACCAGGAGCTGACCCAGCTGAAGGC  668
            ||||||||||||||||||.|.|||||||||||.||||.||||||||||||||||||||||||||||||||||||
Sbjct  502  AAGGCTGCAGTGGGTGAGTTGCCAGAGAAATCCAAGCTGCAGGAGATCTACCAGGAGCTGACCCAGCTGAAGGC  575

Query  669  TGCAGTGGAACGCCTGTGCCACCCCTGTCCCTGGGAATGGACATTCTTCCAAGGAAACTGTTACTTCATGTCTA  742
            ||||||||||||||||||||.||.|||||||..|||.|||||||||||||||||||||||||||||||||||||
Sbjct  576  TGCAGTGGAACGCCTGTGCCGCCACTGTCCCAAGGACTGGACATTCTTCCAAGGAAACTGTTACTTCATGTCTA  649

Query  743  ACTCCCAGCGGAACTGGCACGACTCCATCACCGCCTGCAAAGAAGTGGGGGCCCAGCTCGTCGTAATCAAAAGT  816
            ||||||||||||||||||||||||||.|||||||||||.|.||||||.||||||||||||||||||||||||.|
Sbjct  650  ACTCCCAGCGGAACTGGCACGACTCCGTCACCGCCTGCCAGGAAGTGAGGGCCCAGCTCGTCGTAATCAAAACT  723

Query  817  GCTGAGGAGCAGAACTTCCTACAGCTGCAGTCTTCCAGAAGTAACCGCTTCACCTGGATGGGACTTTCAGATCT  890
            ||||||||||||||||||||||||||||||.|||||||.||||||||||||.|||||||||||||||||||.||
Sbjct  724  GCTGAGGAGCAGAACTTCCTACAGCTGCAGACTTCCAGGAGTAACCGCTTCTCCTGGATGGGACTTTCAGACCT  797

Query  891  AAATCAGGAAGGCACGTGGCAATGGGTGGACGGCTCACCTCTGTTGCCCAGCTTCAAGCAGTATTGGAACAGAG  964
            ||||||||||||||||||||||||||||||||||||||||||||..|||||||||.|||.|||.||||||||.|
Sbjct  798  AAATCAGGAAGGCACGTGGCAATGGGTGGACGGCTCACCTCTGTCACCCAGCTTCCAGCGGTACTGGAACAGTG  871

Query  965  GAGAGCCCAACAACGTTGGGGAGGAAGACTGCGCGGAATTTAGTGGCAATGGCTGGAACGACGACAAATGTAAT  1038
            ||||.||||||||....|||.|.||||||||.||||||||||||||||.|||||||||||||.|...||||.|.
Sbjct  872  GAGAACCCAACAATAGCGGGAATGAAGACTGTGCGGAATTTAGTGGCAGTGGCTGGAACGACAATCGATGTGAC  945

Query 1039  CTTGCCAAATTCTGGATCTGCAAAAAGTCCGCAGCCTCCTGCTCCAGGGATGAAGAACAGTTTCTTTCTCCAGC  1112
            .|||.|||.|.||||||||||||||||.||||||   ||||||.|||.||.|||                    
Sbjct  946  GTTGACAATTACTGGATCTGCAAAAAGCCCGCAG---CCTGCTTCAGAGACGAA--------------------  996

Query 1113  CCCTGCCACCCCAAACCCCCCTCCTGCG  1140
                                        
Sbjct  997  ----------------------------  996