Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11930
- Subject:
- XR_001737206.2
- Aligned Length:
- 4593
- Identities:
- 386
- Gaps:
- 4198
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTGCATGTGAGGATTAGGGAGCCCGGAAAGCCCGTTTCAACTTTTCAGTTCTGAGTCCCGAGTCACTACTCTGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTGTACCGTCTGGAGACTTAATGGGAGCGAGTGCGAGGCAGTGAATTCTCCGCTCTCTAGTTTTCCAATTCTA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGTCTTCAAAAAAAGGTTTGCTCTTGAGCTGCGCCTAAACTGAGAAGCGGGAAAGGCTAGCCCCGCTAAAGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGACGAGTGGCAGAAGCGGAAACCCAGTTAAGAGAAGGGACTGCCCTGGAGAGCACAGAAAGCGAAGGTTAGCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGGGAAAGCGGCGCCCCTCCGAGGAAACCGACACCGCCCCGCCACGCCAAGGCAATGGGCGCCACCACGCAGCG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCGGGAACGCGCGCCGACGCCCCGCGCTCCGCCGGCGTCCGCCCGTCCCCGCGCGCCCCCTCGCACCCCACGCG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CGGGAGGCGGGGCCGGCGGGGGCGCGCGCGGGGCCGCGGGTAGGGGGGCGGGGCGGCAGAGCTCGGCGGCTGGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACTGGAGGACAGCGGTGGCGGAGGCGACTAGCGGCGGCGGGAGCGGCGCCGAGAGGCCGTGCGGGACGCGGGCG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCAGGACCGGCCGAACGCAGAGGTTGATTCTTCACCACACTGAAACCATTAGGAAAAATCCTTGTGGTTAACAG 666
Query 1 ------------------------------------------------ATGGCGACTGATACGTCTCAAGGTGA 26
||||||||||||||||||||||||||
Sbjct 667 CAGAGGCTTCAGAGTGTAACCTGTACTCGGGCCTAGAAATTATTTAAAATGGCGACTGATACGTCTCAAGGTGA 740
Query 27 ACTCGTCCATCCTAAGGCACTCCCACTTATAGTAGGAGCTCAGCTGATCCACGCGGACAAGTTAGGTGAGAAGG 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACTCGTCCATCCTAAGGCACTCCCACTTATAGTAGGAGCTCAGCTGATCCACGCGGACAAGTTAGGTGAGAAGG 814
Query 101 TAGAAGATAGCACCATGCCGATTCGTCGAACTGTGAATTCTACCCGGGAAACTCCTCCCAAAAGCAAGCTTGCT 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TAGAAGATAGCACCATGCCGATTCGTCGAACTGTGAATTCTACCCGGGAAACTCCTCCCAAAAGCAAGCTTGCT 888
Query 175 GAAGGGGAGGAAGAAAAGCCAGAACCAGACATAAGTTCAGAGGAATCTGTCTCCACTGTAGAAGAACAAGAGAA 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAAGGGGAGGAAGAAAAGCCAGAACCAGACATAAGTTCAGAGGAATCTGTCTCCACTGTAGAAGAACAAGAGAA 962
Query 249 TGAAACTCCACCTGCTACTTCGAGTGAGGCAGAGCAGCCAAAGGGGGAACCTGAGAATGAAGAGAAGGAAGAAA 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGAAACTCCACCTGCTACTTCGAGTGAGGCAGAGCAGCCAAAGGGGGAACCTGAGAATGAAGAGAAGGAAGAAA 1036
Query 323 ATAAGTCTTCTGAGGAAACCAAAAAGGA-GA----------------------GAGCTGATAGT---------- 363
|||||||||||||||||||||||||||| || |||..||.|||
Sbjct 1037 ATAAGTCTTCTGAGGAAACCAAAAAGGATGAGAAAGATCAGTCTAAAGAAAAGGAGAAGAAAGTGAAAAAAACA 1110
Query 364 ATTCATTCC------ACTCTTT---TCA------TAATTGGTCAG--------AACAGT--------------- 399
||||.|||| ||.|||| .|| || |.||| ||||..
Sbjct 1111 ATTCCTTCCTGGGCTACCCTTTCTGCCAGCCAGCTA----GCCAGGGCCCAGAAACAAACACCGATGGCTTCTT 1180
Query 400 -------------------------------------------------------------------------- 399
Sbjct 1181 CCCCACGTCCCAAGATGGATGCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGAGTGGTGCATCAGTG 1254
Query 400 -------------------------------------------------------------------------- 399
Sbjct 1255 GTTGCTATTCGAAAATACATCATCCATAAGTATCCTTCTCTGGAGCTGGAGAGAAGGGGTTATCTCCTTAAACA 1328
Query 400 -------------------------------------------------------------------------- 399
Sbjct 1329 AGCACTGAAAAGAGAATTAAATAGAGGAGTCATCAAACAGGTTAAAGGAAAAGGTGCTTCTGGAAGTTTTGTTG 1402
Query 400 -------------------------------------------------------------------------- 399
Sbjct 1403 TGGTTCAGAAATCAAGAAAAACACCTCAGAAATCCAGAAACAGAAAGAATAGGAGCTCTGCAGTGGATCCAGAA 1476
Query 400 -------------------------------------------------------------------------- 399
Sbjct 1477 CCACAAGTAAAATTGGAGGATGTCCTCCCACTGGCCTTTACTCGCCTTTGTGAACCTAAAGAAGCTTCCTACAG 1550
Query 400 -------------------------------------------------------------------------- 399
Sbjct 1551 TCTCATCAGGAAATATGTGTCTCAGTATTATCCTAAGCTTAGAGTGGACATCAGGCCTCAGCTGTTGAAGAACG 1624
Query 400 -------------------------------------------------------------------------- 399
Sbjct 1625 CTCTGCAGAGAGCAGTAGAGAGGGGCCAGTTAGAACAGATAACTGGCAAAGGTGCTTCGGGGACATTCCAGGAA 1698
Query 400 -------------------------------------------------------------------------- 399
Sbjct 1699 CTCCGACCCACCTGGTGCAGAGGAGTCTTGTCTTGACCTGCTTTGGGAGAGTGTTGTCTTGATGCTTTTCTCTT 1772
Query 400 -------------------------------------------------------------------------- 399
Sbjct 1773 CCTCCTTGGAAAACAGCTGAAGAAATCAGGGGAGAAACCCCTGCTTGGTGGAAGCCTGATGGAATATGCAATCT 1846
Query 400 -------------------------------------------------------------------------- 399
Sbjct 1847 TGTCTGCCATTGCTGCCATGAATGAGCCGAAGACCTGCTCTACCACTGCTCTGAAGAAGTATGTCCTAGAGAAT 1920
Query 400 -------------------------------------------------------------------------- 399
Sbjct 1921 CACCCAGGAACCAATTCTAACTATCAAATGCATTTGCTGAAAAAAACCCTGCAGAAATGCGAAAAGAATGGGTG 1994
Query 400 -------------------------------------------------------------------------- 399
Sbjct 1995 GATGGAACAGATCTCTGGGAAAGGGTTCAGTGGCACCTTCCAGCTCTGTTTTCCCTATTATCCCAGCCCAGGAG 2068
Query 400 -------------------------------------------------------------------------- 399
Sbjct 2069 TTCTGTTTCCGAAGAAAGAGCCAGATGATTCTAGAGATGAGGATGAAGATGAAGATGAGTCATCAGAAGAAGAC 2142
Query 400 -------------------------------------------------------------------------- 399
Sbjct 2143 TCTGAGGATGAAGAGCCGCCACCTAAGAGAAGGTTGCAGAAGAAAACCCCAGCCAAGTCCCCAGGGAAGGCCGC 2216
Query 400 -------------------------------------------------------------------------- 399
Sbjct 2217 ATCTGTGAAGCAGAGAGGGTCCAAACCTGCACCTAAAGTCTCAGCTGCCCAGCGGGGGAAAGCTAGGCCCTTGC 2290
Query 400 -------------------------------------------------------------------------- 399
Sbjct 2291 CTAAGAAAGCACCTCCTAAGGCCAAAACGCCTGCCAAGAAGACCAGACCCTCATCCACAGTCATCAAGAAACCT 2364
Query 400 -------------------------------------------------------------------------- 399
Sbjct 2365 AGTGGTGGCTCCTCAAAGAAGCCTGCAACCAGTGCAAGAAAGGAAGTAAAATTGCCGGGCAAGGGCAAATCCAC 2438
Query 400 -------------------------------------------------------------------------- 399
Sbjct 2439 CATGAAGAAGTCTTTCAGAGTGAAAAAGTAAATTTTATAGGAAAAAAGGGTATCATGATGAAATTCAAAATCTT 2512
Query 400 -------------------------------------------------------------------------- 399
Sbjct 2513 ATTTTCTAAGGTCAGTGTGCATTTGTTTAGTTTTGATGCTTTTCAAATTACATTATTTTCCTCCCCTATGAACA 2586
Query 400 -------------------------------------------------------------------------- 399
Sbjct 2587 TTGTGGGGAGGGACTCTAAATAAACCAGTTTAGGCATTTGCTAGCTTTAGGTGCTTTTATTGGTGCCTGCCCTT 2660
Query 400 -------------------------------------------------------------------------- 399
Sbjct 2661 TTCCTTGTTCATTTTAATTTCTGCAATAATCCTGGACTTTCCTAAACTATGTAATGTATACTTGTCCTTTTTCT 2734
Query 400 -------------------------------------------------------------------------- 399
Sbjct 2735 CTGCCTCCCCCAACCCCCTGTTGTTTTTATGGTCAGCTTTGCCTTTTTTTTTTCTTCCAATTTTATCTAAACAG 2808
Query 400 -------------------------------------------------------------------------- 399
Sbjct 2809 TTGCAGAGATTTTTATATTTGTAGAAAGCATCAAGAACGGTATGCCAGTCAGGTCCTGGAAGTAAAATGGAGGC 2882
Query 400 -------------------------------------------------------------------------- 399
Sbjct 2883 ACAATATAGCACTGACTGAGTTGTAAAGCCTCCTGCCTGGAGACTTCAGTTATAGCTGTAATAATTAATCTTAT 2956
Query 400 -------------------------------------------------------------------------- 399
Sbjct 2957 TTATAAAAGCCACTCCACTAACCTTTTCTCTCCAACTGTAAACACAGAGACAGCTTTGGGAATAAGCCAAAAAC 3030
Query 400 -------------------------------------------------------------------------- 399
Sbjct 3031 AGGGTGATCTCATTAGATTTTGAAGATATATGACTCCTTTGGGCTACATTTCATATTGATCAATTTCTAGGTAT 3104
Query 400 -------------------------------------------------------------------------- 399
Sbjct 3105 TTTTCACTGGCCCAAAGTATTGCATTCCCTTAACAGCAAGCACAAGTTCTCTATATCACTTGTTTTTTGTTGTT 3178
Query 400 -------------------------------------------------------------------------- 399
Sbjct 3179 GTTGTTGTTGTCGTCGTTGTTTTGAGACGGAGTCTTGCTCAGGTGCCCCGGAGTGCAGTGGTGCAATCTCAGCT 3252
Query 400 -------------------------------------------------------------------------- 399
Sbjct 3253 CACTGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCTTCAGCCTCCCGAGTAGCTGGGATTACAGGTGT 3326
Query 400 -------------------------------------------------------------------------- 399
Sbjct 3327 GTACCACCACGCCTGGCAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCGTGTTGGTCAGGCTGGTCTC 3400
Query 400 -------------------------------------------------------------------------- 399
Sbjct 3401 GAACTCCTGACCTCAGGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGAGTGAGCCACTGTGC 3474
Query 400 -------------------------------------------------------------------------- 399
Sbjct 3475 CTGGCCTATCCCACTTGGTTTTTGACTGAAGGGGAAGTGTAGAAATATATTGATTTGTGATTTCTGGTGTCACC 3548
Query 400 -------------------------------------------------------------------------- 399
Sbjct 3549 TGTGTTACCAAAAATCAAAACAAATCTTTTTTATTTTTTATTATTATTATTATTTTTGAGACAGAGTCTCGCTC 3622
Query 400 -------------------------------------------------------------------------- 399
Sbjct 3623 TGTCGCCCAGTGTGGAGTGCAGTGGTGTGATCTTGGCTCACTGCAAACTCCGCCTCCCAGGTTCAAGCGATTCT 3696
Query 400 -------------------------------------------------------------------------- 399
Sbjct 3697 CCCACCTCAGCCTCCTGAGTTGGGTCCTACAGGCGCACACGACCACGCCCAGCTAATTTTTTGTATTTTTAGTA 3770
Query 400 -------------------------------------------------------------------------- 399
Sbjct 3771 GAGTTGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACTCACCTCAGCCTCCC 3844
Query 400 -------------------------------------------------------------------------- 399
Sbjct 3845 AAAATCCTGGGGTTACAGATGTGAGCTACCACTCACGGCCCAAATCTTCTTGATCATATGTTTAAATATATTTT 3918
Query 400 -------------------------------------------------------------------------- 399
Sbjct 3919 TTAATATTTGGAGCATGAGTTGTCACTTCTTGTTTGCCTTTTTTATAAGGAAATGTTGGAGAGTTACATCATTG 3992
Query 400 -------------------------------------------------------------------------- 399
Sbjct 3993 CTAATGTAGAAATGTTAAGTGGAAAAATATACAGTTTGGTAAAATAAACTAGATTCTACATTTATTTGTGGGTT 4066
Query 400 -------------------------------------------------------------------------- 399
Sbjct 4067 TTTTTCCCCTCCTTTCTTTCCACAGCACTTTTGATATCAAGCAAGTGGCTTCCTTTTTGAGATATTAAAAAAAA 4140
Query 400 -------------------------------------------------------------------------- 399
Sbjct 4141 AAAGAAAAGGAAAAAAGTAAATGAAGCCCAACTACCTAACCCTTTCTTATTTGTATTTGTTTTAGTATTGTGAA 4214
Query 400 -------------------------------------------------------------------------- 399
Sbjct 4215 GTTGTGTTAAATAGTACTAGCTAGAAATACAAATTTCTGGTTATCATTTCTCTTCCCTGTGGCACTTGACATTT 4288
Query 400 -------------------------------------------------------------------------- 399
Sbjct 4289 TAATTGTCTTAAAGTTTTTGAAGTACATCTTCTGGCCCCTTGAGTACTGCCAGAGGCAAAAGATGTTTGTTTCT 4362
Query 400 -------------------------------------------------------------------------- 399
Sbjct 4363 TATTCATTCCACTTTTGTCTCCTGGGATCCCTTCTGTAGCCTAAAGTATGGCTGGGAAATGGACTTGAGAAGAT 4436
Query 400 -------------------------------------------------------------------------- 399
Sbjct 4437 TGGCTTGAATTAGATCATAATCATGTGTGATCCCATCATGAATTCATTGGAATTTGTGTTGCATGTAAGGCAAT 4510
Query 400 -------------------------------------------------------------------------- 399
Sbjct 4511 CTTTCCTGTTGTAAATCTTCCTTTTTTAATGTACATATATTTTGAAAAATATGAATAAACATGAAATTTTAAAA 4584
Query 400 ----- 399
Sbjct 4585 GCTGC 4589
