Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11964
- Subject:
- XR_001751301.2
- Aligned Length:
- 2543
- Identities:
- 1158
- Gaps:
- 1385
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAAGTTAAGAGTGGCGCCAGGGATTTGAACCGCGCTGACGAAGTTTGGTGATCCATCTTCCGAGTATCGCCGGG 74
Query 1 -------------ATGATCATCCCCTCTCTAGAGGAGCTGGACTCCCTCAAGTACAGTGACCTGCAGAACTTAG 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 ATTTCGAATCGCGATGATCATCCCCTCTCTAGAGGAGCTGGACTCCCTCAAGTACAGTGACCTGCAGAACTTAG 148
Query 62 CCAAGAGTCTGGGTCTCCGGGCCAACCTGAGGGCAACCAAGTTGTTAAAAGCCTTGAAAGGCTACATTAAACAT 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CCAAGAGTCTGGGTCTCCGGGCCAACCTGAGGGCAACCAAGTTGTTAAAAGCCTTGAAAGGCTACATTAAACAT 222
Query 136 GAGGCAAGAAAAGGAAATGAGAATCAGGATGAAAGTCAAACTTCTGCATCCTCTTGTGATGAGACTGAGATACA 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GAGGCAAGAAAAGGAAATGAGAATCAGGATGAAAGTCAAACTTCTGCATCCTCTTGTGATGAGACTGAGATACA 296
Query 210 GATCAGCAACCAGGAAGAAGCTGAGAGACAGCCACTTGGCCATGTCACCAAAACAAGGAGAAGGTGCAAGACTG 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GATCAGCAACCAGGAAGAAGCTGAGAGACAGCCACTTGGCCATGTCACCAAAACAAGGAGAAGGTGCAAGACTG 370
Query 284 TCCGTGTGGACCCTGACTCACAGAATCATTCAGAGATAAAAATAAGTAATCCCACTGAATTCCAGAATCATGAA 357
|||||||||||||||||||| ||||||||||||
Sbjct 371 TCCGTGTGGACCCTGACTCA------------------------------------------CAGAATCATGAA 402
Query 358 AAGCAGGAAAGCCAGGATCTCAGAGCTACTGCAAAAGTTCCTTCTCCACCAGACGAGCACCAAGAAGCTGAGAA 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 AAGCAGGAAAGCCAGGATCTCAGAGCTACTGCAAAAGTTCCTTCTCCACCAGACGAGCACCAAGAAGCTGAGAA 476
Query 432 TGCTGTTTCCTCAGGTAACAGAGATTCAAAGGTACCTTCAGAAGGAAAGAAATCTCTCTACACAGATGAGTCAT 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGCTGTTTCCTCAGGTAACAGAGATTCAAAGGTACCTTCAGAAGGAAAGAAATCTCTCTACACAGATGAGTCAT 550
Query 506 CCAAACCTGGAAAAAATAAAAGAACTGCAATCACTACTCCAAACTTTAAGAAGCTTCATGAAGCTCATTTTAAG 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 CCAAACCTGGAAAAAATAAAAGAACTGCAATCACTACTCCAAACTTTAAGAAGCTTCATGAAGCTCATTTTAAG 624
Query 580 GAAATGGAGTCCATTGATCAATATATTGAGAGAAAAAAGAAACATTTTGAAGAACACAATTCCATGAATGAACT 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 GAAATGGAGTCCATTGATCAATATATTGAGAGAAAAAAGAAACATTTTGAAGAACACAATTCCATGAATGAACT 698
Query 654 GAAGCAGCCCATCAATAAGGGAGGGGTCAGGACTCCAGTACCTCCAAGAGGAAGACTCTCTGTGGCTTCTACTC 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 GAAGCAGCCCATCAATAAGGGAGGGGTCAGGACTCCAGTACCTCCAAGAGGAAGACTCTCTGTGGCTTCTACTC 772
Query 728 CCATCAGCCAACGACGCTCGCAAGGCCGGTCTTGTGGCCCTGCAAGTCAGAGTACCTTGGGTCTGAAGGGGTCA 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 CCATCAGCCAACGACGCTCGCAAGGCCGGTCTTGTGGCCCTGCAAGTCAGAGTACCTTGGGTCTGAAGGGGTCA 846
Query 802 CTCAAGCGCTCTGCTATCTCTGCAGCTAAAACGGGTGT------------------------------------ 839
||||||||||||||||||||||||||||||||||||||
Sbjct 847 CTCAAGCGCTCTGCTATCTCTGCAGCTAAAACGGGTGTCAGGTAAAGAAATCACTCCAAAATGTAATCATGAAC 920
Query 840 -------------------------------------------------------------------------- 839
Sbjct 921 AAGATTTCACATGGACTATATAAAAAAAAAATTTTTAATTGGCAAATAATATTCGTACATACTCATAGGGTACA 994
Query 840 -------------------------------------------------------------------------- 839
Sbjct 995 TAGTGATGTTTCTTTTCTTTTCTTTTTCTTTTTTTTTTTTTTGAGATGAGGTCTCGCTCTGTCGCCCAGGCTGG 1068
Query 840 -------------------------------------------------------------------------- 839
Sbjct 1069 AGTGCAGTGGCGCAATCTCAGCTCCCTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTTCTGCCTCAGCCTCC 1142
Query 840 ----------------CAGGTTTTCAGCTGCTACTAAAGATAATGAGCATAAGCGTTCACTGACCAAGACTCCA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 CGAGTAGCTGGGACTACAGGTTTTCAGCTGCTACTAAAGATAATGAGCATAAGCGTTCACTGACCAAGACTCCA 1216
Query 898 GCCAGAAAGTCTGCACATGTGACCGTGTCTGGGGGCACCCCAAAAGGCGAGGCTGTGCTTGGGACACACAAATT 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 GCCAGAAAGTCTGCACATGTGACCGTGTCTGGGGGCACCCCAAAAGGCGAGGCTGTGCTTGGGACACACAAATT 1290
Query 972 AAAGACCATCACGGGGAATTCTGCTGCTGTTATTACCCCATTCAAGTTGACAACTGAGGCAACGCAGACTCCAG 1045
||||||||||||||||||||||||||||
Sbjct 1291 AAAGACCATCACGGGGAATTCTGCTGCT---------------------------------------------- 1318
Query 1046 TCTCCAATAAGAAACCAGTGTTTGATCTTAAAGCAAGTTTGTCTCGTCCCCTCAACTATGAACCACACAAAGGA 1119
|||
Sbjct 1319 -----------------------------------------------------------------------GGA 1321
Query 1120 AAGCTAAAACCATGGGGGCAATCTAAAGAAAATAATTATCTAAATCAACATGTCAACAGAATTAACTTCTACAA 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 AAGCTAAAACCATGGGGGCAATCTAAAGAAAATAATTATCTAAATCAACATGTCAACAGAATTAACTTCTACAA 1395
Query 1194 GAAAACTTACAAACAACCCCATCTCCAGACAAAGGAAGAGCAACGGAAGAAACGCGAGCAAGAACGAAAGGAGA 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 GAAAACTTACAAACAACCCCATCTCCAGACAAAGGAAGAGCAACGGAAGAAACGCGAGCAAGAACGAAAGGAGA 1469
Query 1268 AGAAAGCAAAGGTTTTGGGAATGCGAAGGGGCCTCATTTTGGCTGAAGAT------------------------ 1317
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 AGAAAGCAAAGGTTTTGGGAATGCGAAGGGGCCTCATTTTGGCTGAAGATTAATAATTTTTTAACATCTTGTAA 1543
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1544 ATATTCCTGTATTCTCAACTTTTTTCCTTTTGTAAATTTTTTTTTTTTGCTGTCATCCCCACTTTAGTCACGAG 1617
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1618 ATCTTTTTCTGCTAACTGTTCATAGTCTGTGTAGTGTCCATGGGTTCTTCATGTGCTATGATCTCTGAAAAGAC 1691
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1692 GTTATCACCTTAAAGCTCAAATTCTTTGGGATGGTTTTTACTTAAGTCCATTAACAATTCAGGTTTCTAACGAG 1765
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1766 ACCCATCCTAAAATTCTGTTTCTAGATTTTTAATGTCAAGTTCCCAAGTTCCCCCTGCTGGTTCTAATATTAAC 1839
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1840 AGAACTGCAGTCTTCTGCTAGCCAATAGCATTTACCTGATGGCAGCTAGTTATGCAAGCTTCAGGAGAATTTGA 1913
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1914 ACAATAACAAGAATAGGGTAAGCTGGGATAGAAAGGCCACCTCTTCACTCTCTATAGAATATAGTAACCTTTAT 1987
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1988 GAAACGGGGCCATATAGTTTGGTTATGACATCAATATTTTACCTAGGTGAAATTGTTTAGGCTTATGTACCTTC 2061
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2062 GTTCAAATATCCTCATGTAATTGCCATCTGTCACTCACTATATTCACAAAAATAAAACTCTACAACTCATTCTA 2135
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2136 ACATTGCTTACTTAAAAGCTACATAGCCCTATCGAAATGCGAGGATTAATGCTTTAATGCTTTTAGAGACAGGG 2209
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2210 TCTCACTGTGTTGCCCAGGCTGGTCTCAAACTCCACCAAATGTACTTCTTATTCATTTTATGGAAAAGACTAGG 2283
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2284 CTTTGCTTAGTATCATGTCCATGTTTCCTTCACCTCAGTGGAGCTTCTGAGTTTTATACTGCTCAAGATCGTCA 2357
Query 1318 --------------------------- 1317
Sbjct 2358 TAAATAAAATTTTTTCTCATTGTCATA 2384
