Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11984
- Subject:
- XR_001748743.2
- Aligned Length:
- 2867
- Identities:
- 1414
- Gaps:
- 1453
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGAGGGGGGCTGCTAAATGCAACATCTTCAGGCCATTACAACGTGCGATATGAATTTTTTTTTTGCTGGGCGCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTCTGTGAAGCTCAGAACGAGGACATGAGTCAAGAAGAGTTTTCTTTCTAGGTCAATAGGAGGAACTGGTCTCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGGGCAAGGAGTGGAAGCCAACAGGAGCAAAAGTAATTGGGGCCTCCTATGGAGGAACTCTGCCAAAAGGAAAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTGCTTGGATTTGCCATCTCAGGAATGGAAGAAGGGGGCGGAGACCCTTTGGGGCTTTTGTGCCCAGTGGGCCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCCCGAAAAGCTCGCACTTTACAGAGGCGGCAAGACTAGGGTGGAGGAAAGCTCAAGGGCCATCGCTGGGTGCT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCGGTGGCGGGCAGAAACGGGACTGGCAGTGCCCACACGTGTGCGTTCTCCCCGTCCGCCCGAAGGAGCTACCT 444
Query 1 ----------------------------------------ATGGCTGACTCAGAAGCACTCCCCTCCCTTGCTG 34
||||||||||||||||||||||||||||||||||
Sbjct 445 GTGCACCCTGCCTCCGGCTCTCCTGAGCAGAGAGATCCTGATGGCTGACTCAGAAGCACTCCCCTCCCTTGCTG 518
Query 35 GGGACCCAGTGGCTGTGGAAGCCTTGCTCCGGGCCGTGTTTGGGGTTGTTGTGGATGAGGCCATTCAGAAAGGA 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GGGACCCAGTGGCTGTGGAAGCCTTGCTCCGGGCCGTGTTTGGGGTTGTTGTGGATGAGGCCATTCAGAAAGGA 592
Query 109 ACCAGTGTCTCCCAGAAGGTCTGTGAGTGGAAGGAGCCTGAGGAGCTGAAGCAGCTGCTGGATTTGGAGCTGCG 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ACCAGTGTCTCCCAGAAGGTCTGTGAGTGGAAGGAGCCTGAGGAGCTGAAGCAGCTGCTGGATTTGGAGCTGCG 666
Query 183 GAGCCAGGGCGAGTCACAGAAGCAGATCCTGGAGCGGTGTCGGGCTGTGATTCGCTACAGTGTCAAGACTGGTC 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAGCCAGGGCGAGTCACAGAAGCAGATCCTGGAGCGGTGTCGGGCTGTGATTCGCTACAGTGTCAAGACTGGTC 740
Query 257 ACCCTCGGTTCTTCAACCAGCTCTTCTCTGGGTTGGATCCCCATGCTCTGGCCGGGCGCATTATCACTGAGAGC 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACCCTCGGTTCTTCAACCAGCTCTTCTCTGGGTTGGATCCCCATGCTCTGGCCGGGCGCATTATCACTGAGAGC 814
Query 331 CTCAACACCAGCCAGTACACATATGAAATCGCCCCCGTGTTTGTGCTCATGGAAGAGGAGGTGCTGAGGAAACT 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTCAACACCAGCCAGTACACATATGAAATCGCCCCCGTGTTTGTGCTCATGGAAGAGGAGGTGCTGAGGAAACT 888
Query 405 GCGGGCCCTGGTGGGCTGGAGCTCTGGGGACGGAATCTTCTGCCCTGGTGGCTCCATCTCCAACATGTATGCTG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GCGGGCCCTGGTGGGCTGGAGCTCTGGGGACGGAATCTTCTGCCCTGGTGGCTCCATCTCCAACATGTATGCTG 962
Query 479 TAAATCTGGCCCGCTATCAGCGCTACCCGGATTGCAAGCAGAGGGGCCTCCGCACACTGCCGCCCCTGGCCCTA 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TAAATCTGGCCCGCTATCAGCGCTACCCGGATTGCAAGCAGAGGGGCCTCCGCACACTGCCGCCCCTGGCCCTA 1036
Query 553 TTCACATCGAAGGAG-----------------------------------------------------TGTCAC 573
||||||||||||||| ||||||
Sbjct 1037 TTCACATCGAAGGAGGTGGGGAAGAGGCACAGGCCCAACCCTGGGCTCCTGATTCTAATCTCCAGCCATGTCAC 1110
Query 574 TACTCCATCCAGAAGGGAGCTGCGTTTCTGGGACTTGGCACCGACAGTGTCCGAGTGGTCAAGGCTGATGAGAG 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TACTCCATCCAGAAGGGAGCTGCGTTTCTGGGACTTGGCACCGACAGTGTCCGAGTGGTCAAGGCTGATGAGAG 1184
Query 648 AGGGAAAATGGTCCCCGAGGATCTGGAGAGGCAGATTGGTATGGCCGAGGCTGAGGGTGCTGTGCCGTTCCTGG 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGGGAAAATGGTCCCCGAGGATCTGGAGAGGCAGATTGGTATGGCCGAGGCTGAGGGTGCTGTGCCGTTCCTGG 1258
Query 722 TCAGTGCCACCTCTGGCACCACTGTGCTAGGGGCCTTTGACCCCCTGGAGGCAATTGCTGATGTGTGCCAGCGT 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCAGTGCCACCTCTGGCACCACTGTGCTAGGGGCCTTTGACCCCCTGGAGGCAATTGCTGATGTGTGCCAGCGT 1332
Query 796 CATGGGCTATGGCTGCATGTGGATGCTGCCTGGGGTGGGAGCGTCCTGCTGTCACAGACACACAGGCATCTCCT 869
||||||||||||||||||||||||
Sbjct 1333 CATGGGCTATGGCTGCATGTGGAT-------------------------------------------------- 1356
Query 870 GGATGGGATCCAGAGGGCTGACTCTGTGGCCTGGAATCCCCACAAGCTCCTCGCAGCAGGCCTGCAATGCTCTG 943
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 ---------------GGCTGACTCTGTGGCCTGGAATCCCCACAAGCTCCTCGCAGCAGGCCTGCAATGCTCTG 1415
Query 944 CACTTCTTCTCCAGGATACCTCGAACCTGCTCAAGCGCTGCCATGGGTCCCAGGCCAGCTACCTTTTCCAGCAG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 CACTTCTTCTCCAGGATACCTCGAACCTGCTCAAGCGCTGCCATGGGTCCCAGGCCAGCTACCTTTTCCAGCAG 1489
Query 1018 GACAAGTTCTACGATGTGGCTCTGGACACGGGAGACAAGGTGGTGCAGTGTGGCCGCCGTGTGGACTGTCTGAA 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 GACAAGTTCTACGATGTGGCTCTGGACACGGGAGACAAGGTGGTGCAGTGTGGCCGCCGTGTGGACTGTCTGAA 1563
Query 1092 GCTGTGGCTCATGTGGAAGGCACAGGGCGATCAAGGGCTGGAGCGGCGCATCGACCAGGCCTTTGTCCTTGCCC 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 GCTGTGGCTCATGTGGAAGGCACAGGGCGATCAAGGGCTGGAGCGGCGCATCGACCAGGCCTTTGTCCTTGCCC 1637
Query 1166 GGTACCTGGTGGAGGAAATGAAGAAGCGGGAAGGGTTTGAGCTAGTCATGGAGCCTGAGTTTGTCAATGTGTGT 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1638 GGTACCTGGTGGAGGAAATGAAGAAGCGGGAAGGGTTTGAGCTAGTCATGGAGCCTGAGTTTGTCAATGTGTGT 1711
Query 1240 TTCTGGTTCGTACCCCCCAGCCTGCGAGGGAAGCAGGAGAGTCCAGATTACCACGAAAGGCTGTCAAAGGTGGC 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1712 TTCTGGTTCGTACCCCCCAGCCTGCGAGGGAAGCAGGAGAGTCCAGATTACCACGAAAGGCTGTCAAAGGTGGC 1785
Query 1314 CCCCGTGCTCAAGGAGCGCATGGTGAAGGAGGGCTCCATGATGATTGGCTACCAGCCCCACGGGACCCGGGGCA 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1786 CCCCGTGCTCAAGGAGCGCATGGTGAAGGAGGGCTCCATGATGATTGGCTACCAGCCCCACGGGACCCGGGGCA 1859
Query 1388 ACTTCTTCCGTGTGGTTGTGGCCAACTCTGCACTGACCTGTGCTGATATGGACTTCCTCCTCAACGAGCTGGAG 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 ACTTCTTCCGTGTGGTTGTGGCCAACTCTGCACTGACCTGTGCTGATATGGACTTCCTCCTCAACGAGCTGGAG 1933
Query 1462 CGGCTAGGCCAGGACCTG-------------------------------------------------------- 1479
||||||||||||||||||
Sbjct 1934 CGGCTAGGCCAGGACCTGTGAGCCTTCTCTGTCTTGCTGCCGGCCTTGATACCACCCCTCACCCGCAGAGTCAC 2007
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2008 TGCATTCCCTCCCAGCCTTTGAGGCCGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGG 2081
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2082 CGGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAATAAGGTGAAACCCTGTCTCTACTAAAAAT 2155
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2156 ACAAAAATTAGCCGAGCATGGTGGCCTGTGCCTGTAAACCCAGCTACTCAGGAGGTTGGGGCAGAATTGCTTGA 2229
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2230 ACCCAGGGGGCAGAGGTTGCAGTGAGCCGAGATTGCACCCCTGCACTCCAGGCTGGGCAACAGTACGAGACTCT 2303
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2304 GTTCCAAAAAAAATAAAAAAGAACAGCCTTTTTAGGCCACAGTGACCTGCGCAATGTTTATATGCTTTGACCTA 2377
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2378 CTAACTTTCTCCTAACTAAATATTTGATTTTAGGAGAGTGTTTAAATAAATTACAGTATGTCTATATGATGAAA 2451
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2452 TGTTATTTTGCCATTAAAATTTTGTTTACAAAGATAATTTTTATTGACATAAAAATAACTTTAATGTAATTTAT 2525
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2526 GTTGAAAAAGCTGAATACAAGTCTTTATATAGAGTAATATTTGAGCTGTGTTCAAAAATACATAGGAAAAGACT 2599
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2600 GATAAAATGAAATATGGCAAAATGTTAATAGTTTTCCCTGGAATAGGATAATAGGCAATTTTAAAACAGACTCC 2673
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2674 TTTAAAAAAACAAACAAACAAAAAAAACATAGACTTCTTTATATCTTTTGAGCTCCCTCCCTTTTATTATGTAA 2747
Query 1480 ------------------------------------------------------- 1479
Sbjct 2748 TGAATATGTGTTGCTTTTGTAATAGGAAAATAATAAAGTTAAAATTTCAACTGCA 2802
