Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11984
Subject:
XR_001748744.2
Aligned Length:
2910
Identities:
1414
Gaps:
1496

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGAAGAGGGGGGCTGCTAAATGCAACATCTTCAGGCCATTACAACGTGCGATATGAATTTTTTTTTTGCTGGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCTCTCTGTGAAGCTCAGAACGAGGACATGAGTCAAGAAGAGTTTTCTTTCTAGGTCAATAGGAGGAACTGGTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCCTGGGCAAGGAGTGGAAGCCAACAGGAGCAAAAGTAATTGGGGCCTCCTATGGAGGAACTCTGCCAAAAGGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAGTTGCTTGGATTTGCCATCTCAGGAATGGAAGAAGGGGGCGGAGACCCTTTGGGGCTTTTGTGCCCAGTGGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCGGCCCGAAAAGCTCGCACTTTACAGAGGCGGCAAGACTAGGGTGGAGGAAAGCTCAAGGGCCATCGCTGGGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GCTTCGGTGGCGGGCAGAAACGGGACTGGCAGTGCCCACACGTGTGCGTTCTCCCCGTCCGCCCGAAGGAGCTA  444

Query    1  -------------------------------------------ATGGCTGACTCAGAAGCACTCCCCTCCCTTG  31
                                                       |||||||||||||||||||||||||||||||
Sbjct  445  CCTGTGCACCCTGCCTCCGGCTCTCCTGAGCAGAGAGATCCTGATGGCTGACTCAGAAGCACTCCCCTCCCTTG  518

Query   32  CTGGGGACCCAGTGGCTGTGGAAGCCTTGCTCCGGGCCGTGTTTGGGGTTGTTGTGGATGAGGCCATTCAGAAA  105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CTGGGGACCCAGTGGCTGTGGAAGCCTTGCTCCGGGCCGTGTTTGGGGTTGTTGTGGATGAGGCCATTCAGAAA  592

Query  106  GGAACCAGTGTCTCCCAGAAGGTCTGTGAGTGGAAGGAGCCTGAGGAGCTGAAGCAGCTGCTGGATTTGGAGCT  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GGAACCAGTGTCTCCCAGAAGGTCTGTGAGTGGAAGGAGCCTGAGGAGCTGAAGCAGCTGCTGGATTTGGAGCT  666

Query  180  GCGGAGCCAGGGCGAGTCACAGAAGCAGATCCTGGAGCGGTGTCGGGCTGTGATTCGCTACAGTGTCAAGACTG  253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GCGGAGCCAGGGCGAGTCACAGAAGCAGATCCTGGAGCGGTGTCGGGCTGTGATTCGCTACAGTGTCAAGACTG  740

Query  254  GTCACCCTCGGTTCTTCAACCAGCTCTTCTCTGGGTTGGATCCCCATGCTCTGGCCGGGCGCATTATCACTGAG  327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GTCACCCTCGGTTCTTCAACCAGCTCTTCTCTGGGTTGGATCCCCATGCTCTGGCCGGGCGCATTATCACTGAG  814

Query  328  AGCCTCAACACCAGCCAGTACACATATGAAATCGCCCCCGTGTTTGTGCTCATGGAAGAGGAGGTGCTGAGGAA  401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AGCCTCAACACCAGCCAGTACACATATGAAATCGCCCCCGTGTTTGTGCTCATGGAAGAGGAGGTGCTGAGGAA  888

Query  402  ACTGCGGGCCCTGGTGGGCTGGAGCTCTGGGGACGGAATCTTCTGCCCTGGTGGCTCCATCTCCAACATGTATG  475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ACTGCGGGCCCTGGTGGGCTGGAGCTCTGGGGACGGAATCTTCTGCCCTGGTGGCTCCATCTCCAACATGTATG  962

Query  476  CTGTAAATCTGGCCCGCTATCAGCGCTACCCGGATTGCAAGCAGAGGGGCCTCCGCACACTGCCGCCCCTGGCC  549
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CTGTAAATCTGGCCCGCTATCAGCGCTACCCGGATTGCAAGCAGAGGGGCCTCCGCACACTGCCGCCCCTGGCC  1036

Query  550  CTATTCACATCGAAGGAG-----------------------------------------------------TGT  570
            ||||||||||||||||||                                                     |||
Sbjct 1037  CTATTCACATCGAAGGAGGTGGGGAAGAGGCACAGGCCCAACCCTGGGCTCCTGATTCTAATCTCCAGCCATGT  1110

Query  571  CACTACTCCATCCAGAAGGGAGCTGCGTTTCTGGGACTTGGCACCGACAGTGTCCGAGTGGTCAAGGCTGATGA  644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CACTACTCCATCCAGAAGGGAGCTGCGTTTCTGGGACTTGGCACCGACAGTGTCCGAGTGGTCAAGGCTGATGA  1184

Query  645  GAGAGGGAAAATGGTCCCCGAGGATCTGGAGAGGCAGATTGGTATGGCCGAGGCTGAG----------------  702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
Sbjct 1185  GAGAGGGAAAATGGTCCCCGAGGATCTGGAGAGGCAGATTGGTATGGCCGAGGCTGAGGTTGACTTTTCACTTT  1258

Query  703  ------------------------GGTGCTGTGCCGTTCCTGGTCAGTGCCACCTCTGGCACCACTGTGCTAGG  752
                                    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TTTGAAACTTTTATTTTGGATTCAGGTGCTGTGCCGTTCCTGGTCAGTGCCACCTCTGGCACCACTGTGCTAGG  1332

Query  753  GGCCTTTGACCCCCTGGAGGCAATTGCTGATGTGTGCCAGCGTCATGGGCTATGGCTGCATGTGGATGCTGCCT  826
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct 1333  GGCCTTTGACCCCCTGGAGGCAATTGCTGATGTGTGCCAGCGTCATGGGCTATGGCTGCATGTGGAT-------  1399

Query  827  GGGGTGGGAGCGTCCTGCTGTCACAGACACACAGGCATCTCCTGGATGGGATCCAGAGGGCTGACTCTGTGGCC  900
                                                                      ||||||||||||||||
Sbjct 1400  ----------------------------------------------------------GGCTGACTCTGTGGCC  1415

Query  901  TGGAATCCCCACAAGCTCCTCGCAGCAGGCCTGCAATGCTCTGCACTTCTTCTCCAGGATACCTCGAACCTGCT  974
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416  TGGAATCCCCACAAGCTCCTCGCAGCAGGCCTGCAATGCTCTGCACTTCTTCTCCAGGATACCTCGAACCTGCT  1489

Query  975  CAAGCGCTGCCATGGGTCCCAGGCCAGCTACCTTTTCCAGCAGGACAAGTTCTACGATGTGGCTCTGGACACGG  1048
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490  CAAGCGCTGCCATGGGTCCCAGGCCAGCTACCTTTTCCAGCAGGACAAGTTCTACGATGTGGCTCTGGACACGG  1563

Query 1049  GAGACAAGGTGGTGCAGTGTGGCCGCCGTGTGGACTGTCTGAAGCTGTGGCTCATGTGGAAGGCACAGGGCGAT  1122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564  GAGACAAGGTGGTGCAGTGTGGCCGCCGTGTGGACTGTCTGAAGCTGTGGCTCATGTGGAAGGCACAGGGCGAT  1637

Query 1123  CAAGGGCTGGAGCGGCGCATCGACCAGGCCTTTGTCCTTGCCCGGTACCTGGTGGAGGAAATGAAGAAGCGGGA  1196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1638  CAAGGGCTGGAGCGGCGCATCGACCAGGCCTTTGTCCTTGCCCGGTACCTGGTGGAGGAAATGAAGAAGCGGGA  1711

Query 1197  AGGGTTTGAGCTAGTCATGGAGCCTGAGTTTGTCAATGTGTGTTTCTGGTTCGTACCCCCCAGCCTGCGAGGGA  1270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1712  AGGGTTTGAGCTAGTCATGGAGCCTGAGTTTGTCAATGTGTGTTTCTGGTTCGTACCCCCCAGCCTGCGAGGGA  1785

Query 1271  AGCAGGAGAGTCCAGATTACCACGAAAGGCTGTCAAAGGTGGCCCCCGTGCTCAAGGAGCGCATGGTGAAGGAG  1344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1786  AGCAGGAGAGTCCAGATTACCACGAAAGGCTGTCAAAGGTGGCCCCCGTGCTCAAGGAGCGCATGGTGAAGGAG  1859

Query 1345  GGCTCCATGATGATTGGCTACCAGCCCCACGGGACCCGGGGCAACTTCTTCCGTGTGGTTGTGGCCAACTCTGC  1418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860  GGCTCCATGATGATTGGCTACCAGCCCCACGGGACCCGGGGCAACTTCTTCCGTGTGGTTGTGGCCAACTCTGC  1933

Query 1419  ACTGACCTGTGCTGATATGGACTTCCTCCTCAACGAGCTGGAGCGGCTAGGCCAGGACCTG-------------  1479
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
Sbjct 1934  ACTGACCTGTGCTGATATGGACTTCCTCCTCAACGAGCTGGAGCGGCTAGGCCAGGACCTGTGAGCCTTCTCTG  2007

Query 1480  --------------------------------------------------------------------------  1479
                                                                                      
Sbjct 2008  TCTTGCTGCCGGCCTTGATACCACCCCTCACCCGCAGAGTCACTGCATTCCCTCCCAGCCTTTGAGGCCGGGTG  2081

Query 1480  --------------------------------------------------------------------------  1479
                                                                                      
Sbjct 2082  CAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACTTGAGGTCAGGAGTTCGAG  2155

Query 1480  --------------------------------------------------------------------------  1479
                                                                                      
Sbjct 2156  ACCAGCCTGGCCAATAAGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGAGCATGGTGGCCTGTGC  2229

Query 1480  --------------------------------------------------------------------------  1479
                                                                                      
Sbjct 2230  CTGTAAACCCAGCTACTCAGGAGGTTGGGGCAGAATTGCTTGAACCCAGGGGGCAGAGGTTGCAGTGAGCCGAG  2303

Query 1480  --------------------------------------------------------------------------  1479
                                                                                      
Sbjct 2304  ATTGCACCCCTGCACTCCAGGCTGGGCAACAGTACGAGACTCTGTTCCAAAAAAAATAAAAAAGAACAGCCTTT  2377

Query 1480  --------------------------------------------------------------------------  1479
                                                                                      
Sbjct 2378  TTAGGCCACAGTGACCTGCGCAATGTTTATATGCTTTGACCTACTAACTTTCTCCTAACTAAATATTTGATTTT  2451

Query 1480  --------------------------------------------------------------------------  1479
                                                                                      
Sbjct 2452  AGGAGAGTGTTTAAATAAATTACAGTATGTCTATATGATGAAATGTTATTTTGCCATTAAAATTTTGTTTACAA  2525

Query 1480  --------------------------------------------------------------------------  1479
                                                                                      
Sbjct 2526  AGATAATTTTTATTGACATAAAAATAACTTTAATGTAATTTATGTTGAAAAAGCTGAATACAAGTCTTTATATA  2599

Query 1480  --------------------------------------------------------------------------  1479
                                                                                      
Sbjct 2600  GAGTAATATTTGAGCTGTGTTCAAAAATACATAGGAAAAGACTGATAAAATGAAATATGGCAAAATGTTAATAG  2673

Query 1480  --------------------------------------------------------------------------  1479
                                                                                      
Sbjct 2674  TTTTCCCTGGAATAGGATAATAGGCAATTTTAAAACAGACTCCTTTAAAAAAACAAACAAACAAAAAAAACATA  2747

Query 1480  --------------------------------------------------------------------------  1479
                                                                                      
Sbjct 2748  GACTTCTTTATATCTTTTGAGCTCCCTCCCTTTTATTATGTAATGAATATGTGTTGCTTTTGTAATAGGAAAAT  2821

Query 1480  ------------------------  1479
                                    
Sbjct 2822  AATAAAGTTAAAATTTCAACTGCA  2845

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.