Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11984
- Subject:
- XR_001781536.1
- Aligned Length:
- 2186
- Identities:
- 1126
- Gaps:
- 915
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCCTATTCTGAAAAGTCCATTGTGTACCTTGTCACCAGCTCGTCTGATCCTTCTCTGAGCCCTCCTGAGCTGGA 74
Query 1 -------------ATGGCTGACTCAGAAGCACTCCCCTCCCTTGCTGGGGACCCAGTGGCTGTGGAAGCCTTGC 61
||||||||||||.||.|||||....||||.|.|||||||||.|||||||||||.|||||||
Sbjct 75 AGATTTCATCCTGATGGCTGACTCAAAACCACTCAGGACCCTGGATGGGGACCCCGTGGCTGTGGAGGCCTTGC 148
Query 62 TCCGGGCCGTGTTTGGGGTTGTTGTGGATGAGGCCATTCAGAAAGGAACCAGTGTCTCCCAGAAGGTCTGTGAG 135
|||.||.||||||||||.|||||||.|||||||||||||.|||.||.|||||||.|||..||||||||||.||.
Sbjct 149 TCCAGGACGTGTTTGGGATTGTTGTAGATGAGGCCATTCTGAAGGGGACCAGTGCCTCTGAGAAGGTCTGCGAA 222
Query 136 TGGAAGGAGCCTGAGGAGCTGAAGCAGCTGCTGGATTTGGAGCTGCGGAGCCAGGGCGAGTCACAGAAGCAGAT 209
||||||||||||||.||.||.||||||||||||||.||||||||||.|||||||||||||||.|.|.|||||||
Sbjct 223 TGGAAGGAGCCTGAAGAACTCAAGCAGCTGCTGGACTTGGAGCTGCAGAGCCAGGGCGAGTCCCGGGAGCAGAT 296
Query 210 CCTGGAGCGGTGTCGGGCTGTGATTCGCTACAGTGTCAAGACTGGTCACCCTCGGTTCTTCAACCAGCTCTTCT 283
|||||||||.||.|||.|||||||||.||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 297 CCTGGAGCGCTGCCGGACTGTGATTCACTACAGTGTCAAGACTGGTCACCCCCGGTTCTTCAACCAGCTCTTCT 370
Query 284 CTGGGTTGGATCCCCATGCTCTGGCCGGGCGCATTATCACTGAGAGCCTCAACACCAGCCAGTACACATATGAA 357
|.|||||.|||||||||||||||||.||||||||.|||||.||||||||||||||.|||||||||||||||||.
Sbjct 371 CAGGGTTAGATCCCCATGCTCTGGCTGGGCGCATCATCACGGAGAGCCTCAACACTAGCCAGTACACATATGAG 444
Query 358 ATCGCCCCCGTGTTTGTGCTCATGGAAGAGGAGGTGCTGAGGAAACTGCGGGCCCTGGTGGGCTGGAGCTCTGG 431
||.|||||||||||||||||||||||||||||||||||||.||||||.||.||||||||||||||||.||||||
Sbjct 445 ATTGCCCCCGTGTTTGTGCTCATGGAAGAGGAGGTGCTGAAGAAACTCCGTGCCCTGGTGGGCTGGAACTCTGG 518
Query 432 GGACGGAATCTTCTGCCCTGGTGGCTCCATCTCCAACATGTATGCTGTAAATCTGGCCCGCTATCAGCGCTACC 505
|||.||..|||||||.||||||||||||||||||||||||||.||..|.||.||||||||||.|||||||||||
Sbjct 519 GGATGGGGTCTTCTGTCCTGGTGGCTCCATCTCCAACATGTACGCCATGAACCTGGCCCGCTTTCAGCGCTACC 592
Query 506 CGGATTGCAAGCAGAGGGGCCTCCGCACACTGCCGCCCCTGGCCCTATTCACATCGAAGGAGTGTCACTACTCC 579
|.||.||||||||||||||||||||..|.|||||||||.||||.||.|||||.||.||||||||||||||||||
Sbjct 593 CAGACTGCAAGCAGAGGGGCCTCCGGGCCCTGCCGCCCTTGGCTCTCTTCACTTCAAAGGAGTGTCACTACTCC 666
Query 580 ATCCAGAAGGGAGCTGCGTTTCTGGGACTTGGCACCGACAGTGTCCGAGTGGTCAAGGCTGATGAGAGAGGGAA 653
|||...|||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 667 ATCACCAAGGGAGCTGCTTTTCTGGGACTTGGCACCGACAGTGTCCGAGTGGTCAAGGCTGATGAGAGAGGGAG 740
Query 654 AATGGTCCCCGAGGATCTGGAGAGGCAGATTGGTATGGCCGAGGCTGAGGGTGCTGTGCCGTTCCTGGTCAGTG 727
.|||.||||.|||||.||||||||||||||...|.||||.|||||||||||..|||||||.||.||||||||||
Sbjct 741 GATGATCCCTGAGGACCTGGAGAGGCAGATCATTCTGGCAGAGGCTGAGGGCTCTGTGCCATTTCTGGTCAGTG 814
Query 728 CCACCTCTGGCACCACTGTGCTAGGGGCCTTTGACCCCCTGGAGGCAATTGCTGATGTGTGCCAGCGTCATGGG 801
||||||||||.|||||.||||||||||||||||||||||||||.||||||||.|||||.||||||||.||.||.
Sbjct 815 CCACCTCTGGTACCACCGTGCTAGGGGCCTTTGACCCCCTGGATGCAATTGCCGATGTTTGCCAGCGACACGGA 888
Query 802 CTATGGCTGCATGTGGATGCTGCCTGGGGTGGGAGCGTCCTGCTGTCACAGACACACAGGCATCTCCTGGATGG 875
||.|||.|.|||||||||
Sbjct 889 CTGTGGTTCCATGTGGAT-------------------------------------------------------- 906
Query 876 GATCCAGAGGGCTGACTCTGTGGCCTGGAATCCCCACAAGCTCCTCGCAGCAGGCCTGCAATGCTCTGCACTTC 949
|||||||||||||||||||||.||.||||||||.|||||.|||||.|||||.|||||.||.||||
Sbjct 907 ---------GGCTGACTCTGTGGCCTGGAACCCTCACAAGCTTCTCGCCGCAGGGCTGCAGTGCTCCGCTCTTC 971
Query 950 TTCTCCAGGATACCTCGAACCTGCTCAAGCGCTGCCATGGGTCCCAGGCCAGCTACCTTTTCCAGCAGGACAAG 1023
||||||.|||.|||||||||||||||||||||||||||||.|||||||||||||||||.||||||||.||||||
Sbjct 972 TTCTCCGGGACACCTCGAACCTGCTCAAGCGCTGCCATGGATCCCAGGCCAGCTACCTCTTCCAGCAAGACAAG 1045
Query 1024 TTCTACGATGTGGCTCTGGACACGGGAGACAAGGTGGTGCAGTGTGGCCGCCGTGTGGACTGTCTGAAGCTGTG 1097
|||||||||||||||||||||||.||||||||.||||||||||||||||||||.|||||||||||||||||.||
Sbjct 1046 TTCTACGATGTGGCTCTGGACACCGGAGACAAAGTGGTGCAGTGTGGCCGCCGCGTGGACTGTCTGAAGCTATG 1119
Query 1098 GCTCATGTGGAAGGCACAGGGCGATCAAGGGCTGGAGCGGCGCATCGACCAGGCCTTTG-TCCTTGCCCGGTAC 1170
|||||||||||||||||||||.|..||.|||.||||||||||||||||||||||||||| ||
Sbjct 1120 GCTCATGTGGAAGGCACAGGGTGGGCAGGGGTTGGAGCGGCGCATCGACCAGGCCTTTGCTC------------ 1181
Query 1171 CTGGTGGAGGAAATGAAGAAGCGGGAAGGGTTTGAGCTAGTCATGGAGCCTGAGTTTGTCAATGTGTGTTTCTG 1244
||
Sbjct 1182 ----------------------------------------TC-------------------------------- 1183
Query 1245 GTTCGTACCCCCCAGCCTGCGAGGGAAGCAGGAGAGTCCAGATTACCACGAAAGGCTGTCAAAGGTGGCCCCCG 1318
|||| |||||||||.|
Sbjct 1184 ------ACCC-----------------------------------------------------GGTGGCCCCTG 1198
Query 1319 TGCTCAAGGAGCGCATGGTGAAGGAGGGCTCCATGATGATTGGCTACCAGCCCCACGGGACCCGGGGCAACTTC 1392
|||||||||||||||||||||||.||||..|||||||||||||||||||||||||.||||||||||.|||||||
Sbjct 1199 TGCTCAAGGAGCGCATGGTGAAGAAGGGGACCATGATGATTGGCTACCAGCCCCATGGGACCCGGGCCAACTTC 1272
Query 1393 TTCCGTGTGGTTGTGGCCAACTCTGCACTGACCTGTGCTGATATGGACTTCCTCCTCAACGAGCTGGAGCGGCT 1466
|||||..||||.|||||||||.|...||||.||...||.|||||.||.|||||.||...|||||||||||..||
Sbjct 1273 TTCCGAATGGTGGTGGCCAACCCCATACTGGCCCAGGCCGATATAGATTTCCTTCTGGGCGAGCTGGAGCTCCT 1346
Query 1467 AGGCCAGGACCTG------------------------------------------------------------- 1479
.||||||||||||
Sbjct 1347 GGGCCAGGACCTGTGAGCTGCTTCTGCTCTCTGCCCCACCCAAGCTCTGCGTAGTCTCCTGGGTTCTCAAAATC 1420
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1421 GACCTTTCTAGGAAACAGTGGCCTTGACTGTGTGTGCTCCCACACACTCACTCTCCCAGCTAAGTATTGGCTGT 1494
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1495 CAGGAAGGTGTCTAAACACACTACAGTATGTTCTTACGAAATATGCTTTTATTAAGTTGGGCACAGGGGCACAC 1568
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1569 ACCTTTACTACCAGCATTGGGGGGACAGAAGCAGCCAGTTTGAGGCCAGCCTGGACTACAGAGCTGGGCTACAC 1642
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1643 AGAGAAACTGTCTCAAAAAGAAAAAAAGAAAAGAAAAAAAGAAATATTTTTCATTAAAATTATGTTTATAAAGA 1716
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1717 ATTTTTATTAATATGAGAGAAATGGTACAATGTATTGAAAAGCTGGATATGAGTTTATGAATCACAGTATCTGA 1790
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1791 GTTAGGCTAAAAATCACATAGGAAAAGGCTGTCGGTGGAACTGTGCCAAAGGTCAGCAGTTTTCCCTGGAACGG 1864
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1865 GATATTAGGTTATTCCCAAATCAACCTCTCAGACCTTTTGTGCTTCCCCATTTTATTGTGTAACAACATCACAT 1938
Query 1480 ---------------------------------------- 1479
Sbjct 1939 ACTTCTGAAATAGGACAATAAAGCTGCGGTTTCCATTATA 1978
