Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12028
Subject:
XR_380422.3
Aligned Length:
2156
Identities:
797
Gaps:
1266

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TGGTTGCACGGAGGGGGCGGGTCCTCGCCGCGCGCAGTGCTTCGGCCAGAGCTCGAGGCGCTGCTTACCGTCGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTGAGCTAGGAGACGCCGCGGCCGCCGCTGGGTCGCATCGGGCTTCGCGTCGCGCCGTGTACGCCTCCTCTGCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCACCCGACCGGCAGCATAGGCTCTACCTGGTCCGCGGCCTCCCTGTCCGCGGCGGGGCAGGTGGTTTTCCTGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGTGAACTCCTGCCCTGCCTTCCGGTAGCTGGCTCGTGGCTCCCAACTCTGAGCTCTCGGTGAACCTGGGAAGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGATGAGAACAGGGTAGGTGAGCTCCAGCCAAGCCAGCCCTGCCAGAGACCTTCAGTTTCGGTGGCTGGTGCTC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGAGCCACAGTGCGCTTCAGCATTTGGATCTATGGGCCTGCTTTGAACCATAGAGCCTGCCTATGGGGGAAGGT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GACGCCATCTGGGCCCCACCCATCCTTCCTCACAGCACCCTCGGCACCTTAAGCCACCACCCTGAGCTACATTT  518

Query    1  ----------ATGGAGTCCAAGGTCTCAGAAGGTGGCCTGAATGTGACCCTCACCATCCGCCTGCTGATGCATG  64
                      |||||.||.||||||||.||||||||||||||.||.|||||.|||||||||||.||||||||||
Sbjct  519  TGGAGGGAAGATGGAATCTAAGGTCTCGGAAGGTGGCCTGAACGTAACCCTGACCATCCGCCTACTGATGCATG  592

Query   65  GAAAGGAAGTTGGAAGCATCATCGGGAAGAAAGGAGAAACTGTGAAGAAGATGCGTGAGGAGAGTGGTGCAAGG  138
            ||||||||||||||||||||||||||||||||||||||||.||.||||||||||||||.||||||||.||.|||
Sbjct  593  GAAAGGAAGTTGGAAGCATCATCGGGAAGAAAGGAGAAACAGTAAAGAAGATGCGTGAAGAGAGTGGCGCCAGG  666

Query  139  ATCAACATCTCAGAGGGAAACTGCCCAGAGAGGATTGTGACCATCACAGGCCCCACAGACGCCATCTTCAAGGC  212
            ||||||||||||||||||||||||||||||||.||.||.||.|||||||||||.||.|||||||||||||||||
Sbjct  667  ATCAACATCTCAGAGGGAAACTGCCCAGAGAGAATCGTTACAATCACAGGCCCAACTGACGCCATCTTCAAGGC  740

Query  213  CTTTGCCATGATCGCATACAAGTTTGAGGAGGATATCATCAACTCCATGAGCAACAGCCCTGCCACCAGCAAGC  286
            ||||||.||||||||.|||||||||||||||||.|||||.||.|||||||||||||||||||||||||||||||
Sbjct  741  CTTTGCTATGATCGCGTACAAGTTTGAGGAGGACATCATTAATTCCATGAGCAACAGCCCTGCCACCAGCAAGC  814

Query  287  CCCCAGTGACGCTGAGGCTGGTGGTGCCTGCCAGCCAGTGCGGGTCCCTGATCGGCAAAGGAGGCTCCAAGATC  360
            |.||||||||.|||.|.||.|||||.||||||||||||||.||||||||||||||||||||.||||||||||||
Sbjct  815  CTCCAGTGACACTGCGACTAGTGGTCCCTGCCAGCCAGTGTGGGTCCCTGATCGGCAAAGGTGGCTCCAAGATC  888

Query  361  AAGGAGATCAGGGAGTCCACAGGTGCCCAGGTGCAGGTGGCTGGGGACATGCTGCCCAACTCCACGGAGCGAGC  434
            |||||||||.||||||||||||||||.|||||.||||||||.||.||||||||||||||||||||.|||||.||
Sbjct  889  AAGGAGATCCGGGAGTCCACAGGTGCTCAGGTCCAGGTGGCAGGTGACATGCTGCCCAACTCCACAGAGCGGGC  962

Query  435  GGTGACCATCTCGGGGACCCCAGATGCCATCATCCAGTGCGTCAAGCAGATCTGTGTGGTCATGCTGGAGGCCT  508
            .|||||.|||||.|||||||||||.||||||||||||||.||.||.||||||||||||||||||||||||.|| 
Sbjct  963  AGTGACTATCTCAGGGACCCCAGACGCCATCATCCAGTGTGTGAAACAGATCTGTGTGGTCATGCTGGAGTCC-  1035

Query  509  ACACAATCCAGGGACAGTATGCCA----TCCCTCACCCGGATTTGACCAA------GCTCCAC-----------  561
                   |||..||.|| .|||||    ||||| |||       |.||||      .||||||           
Sbjct 1036  -------CCACCGAAAG-GTGCCACCATTCCCT-ACC-------GCCCAAAGCCCGCCTCCACCCCTGTCATTT  1093

Query  562  ---CAGTTGGCCATG---CAGCAAACCCCCT---TTCCTCCCCTCGGACAGACCAACCCC--GCTTTCCCCGGA  624
               |||.|||.||.|   .|||..||||.||   ..|||||.||       .||||||.|  .||||..|.|.|
Sbjct 1094  TTGCAGGTGGTCAGGTAAGAGCCGACCCGCTCGCGGCCTCCACT-------GCCAACCTCAGCCTTTTACTGCA  1160

Query  625  GAA----AAGCTGCCTTTACACTCCTCCGAAGAAGCTCAAAATCTGATGGGCCAGT----CATC----------  680
            |.|    ..||||||      |.|||          .||.||||  ..|||.||||    ||||          
Sbjct 1161  GCATCCGCCGCTGCC------CGCCT----------ACACAATC--CAGGGACAGTACGCCATCCCCCACCCAG  1216

Query  681  AGGTCTGGACGCCAGCCCACCGGCCAGCACTCATGAGCTCACCATTCCCAATGATCTAATAGGCTGCATAATTG  754
            |.|||||||.|||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||
Sbjct 1217  ATGTCTGGATGCCAGCCCACCGGCCAGCACTCATGAGCTCACCATTCCCAATGAT-------GCTGCATAATTG  1283

Query  755  GACGCCAAGGGACCAAAATCAATGAAATTCGACAGATGTCTGGAGCTCAGATCAAAATCGCCAACGCCACGGAA  828
            ||||||||||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||.|||
Sbjct 1284  GACGCCAAGGCACCAAAATCAATGAAATCCGACAGATGTCTGGAGCTCAGATCAAAATCGCCAATGCCACTGAA  1357

Query  829  GGGTCCTCAGAGCGTCAGATCACCATCACGGGGACCCCGGCCAACATCAGCCTTGCCCAGTATCTCATCAACGC  902
            |||||.||||||||.|||||.||||||||.||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 1358  GGGTCGTCAGAGCGCCAGATTACCATCACAGGGACCCCAGCCAACATCAGCCTTGCCCAGTATCTCATCAACGC  1431

Query  903  CAGGCTGACGTCCGAGGTCACCGGGATGG--GCACGCTG-----------------------------------  939
            .|||||||||||.||||||||||||||||  ||||.||.                                   
Sbjct 1432  TAGGCTGACGTCTGAGGTCACCGGGATGGGTGCACTCTAACCTACCCAAGGTCCTCCACTGCACACATCGGATG  1505

Query  940  --------------------------------------------------------------------------  939
                                                                                      
Sbjct 1506  GCTCCAGCCCGCAGCCTCACCAGCTGGCACACTGTACAGACTGCCTGTCCTTCCTTGCAGATATGAATAGAGCG  1579

Query  940  --------------------------------------------------------------------------  939
                                                                                      
Sbjct 1580  TTTTCTTTACAAACAGATGATAGTGCGTGTCTGCCCACTCAGGCCCTGTGCGCTCCGTGTTAGTGTAGCCCTCC  1653

Query  940  --------------------------------------------------------------------------  939
                                                                                      
Sbjct 1654  ACGCATTGGCATGCAGCTCTTTACTTTACTGCTCAACGTATTCCCAAATGTGATGTTTCAGAGATTTATTCCTC  1727

Query  940  --------------------------------------------------------------------------  939
                                                                                      
Sbjct 1728  AGTATCCATGTGACTGTCTGTTTAAAAGTTGGTTTGATGCTTTAACAGCACTTCCTATGTCCTGCTGTCCCTTG  1801

Query  940  --------------------------------------------------------------------------  939
                                                                                      
Sbjct 1802  TTCTCAGAGACCCTCCTCTCTCACCCAGTCTACTGACTCATTTCCGCCCTAGGTTGTATGCAGGGATCAGAGGT  1875

Query  940  --------------------------------------------------------------------------  939
                                                                                      
Sbjct 1876  ACTTTTATTGCAACCTGCAGGGAGTGTCTGGAAGAGGAGGGACTTGGGGGTGTATCTAAGGAGCAGGGTAGAGT  1949

Query  940  --------------------------------------------------------------------------  939
                                                                                      
Sbjct 1950  GCCAGAGGGTGGGGTGGGACCCTGACTTCACTGGGATATCTCGGGGAGGGGGCACTTGTGCCCTCCAGGTGTCT  2023

Query  940  --------------------------------------------------------------------------  939
                                                                                      
Sbjct 2024  TCCAAGATGGCTAAGAACAAGGACTTGCCAGAAAGTTCATCTGCACCCATCAGAGTTTAATAAATGTCGTGTTC  2097

Query  940  ----------  939
                      
Sbjct 2098  CTCCCCCATG  2107

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