Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12044
- Subject:
- XM_017321310.1
- Aligned Length:
- 3547
- Identities:
- 2153
- Gaps:
- 992
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGACGTCCGAAGACAAGAAGGAACGACCCATAAGTATGATAAATGAAGCTTCCAATTACAACATGGCTTCAGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTATGCAGTGCATCCCATGAGCCCTGTGGGCAGGACCTCGCGGGCCTCCAAAAAGGTTCATAATTTTGGGAAAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGTCCAATTCAATTAAAAGGAACCCTAATGCACCTGTGGTCCGGCGTGGCTGGCTGTATAAGCAGGACAGCACC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGCATGAAGCTGTGGAAGAAGCGCTGGTTTGTGCTCTCTGACCTTTGCCTTTTCTATTACCGAGATGAGAAGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGAGGGTATTTTGGGAAGTATCCTGTTGCCTAGTTTTCAGATAGCCATGCTCACTGCTGAGGACCACATCAATC 370
Query 1 --------------------------------ATGCGGACCTATTATTTCTGCACTGATACAGGAAAGGAAATG 42
|||||||||||||||||||||||.||||||||||||||.|||
Sbjct 371 GCAAATATGCTTTTAAGGCAGCCCACCCAAACATGCGGACCTATTATTTCTGCACCGATACAGGAAAGGAGATG 444
Query 43 GAGTTGTGGATGAAAGCCATGTTAGATGCTGCCCTAGTACAGACAGAACCTGTGAAAA---------------- 100
|||.||||||||||.|||||||||||||||||.||.||.|||||||||||||||||||
Sbjct 445 GAGCTGTGGATGAAGGCCATGTTAGATGCTGCTCTGGTGCAGACAGAACCTGTGAAAAGAATTACCTTTAATTT 518
Query 101 --GAGTGGACAAGATTACATCTGAAAATGCACCAACTAAAGAAACCAATAACATTCCCAACCATAGAGTGCTAA 172
|||||||||||||||||.||||.|.||||.||||.||||||||||||||||||||||||||.|||||.||.|
Sbjct 519 CCGAGTGGACAAGATTACAACTGACAGTGCATCAACCAAAGAAACCAATAACATTCCCAACCACAGAGTTCTCA 592
Query 173 TTAAACCAGAGATCCAAAACAATCAAAAAAACAAGGAAATGAGCAAAATTGAAGAAAAAAAGGCATTAGAAGCT 246
|||.|||.|||.||||||||.||||.||.||.||||||||.|||||||||||||||||||.|||.|||||||||
Sbjct 593 TTAGACCCGAGGTCCAAAACCATCAGAAGAATAAGGAAATCAGCAAAATTGAAGAAAAAAGGGCCTTAGAAGCT 666
Query 247 GAAAAATATGGATTTCAGAAGGATGGTCAAGATAGACCCTTAACAAAAATTAATAGTGTAAAGCTGAATTCTCT 320
||||.|||.||||||||||||||.||.|||||||||||.||||||||||||||.|||||.|||.||||.||.||
Sbjct 667 GAAAGATACGGATTTCAGAAGGACGGGCAAGATAGACCATTAACAAAAATTAACAGTGTGAAGTTGAACTCCCT 740
Query 321 GCCATCTGAATATGAGAGTGGGTCAGCATGCCCTGCTCAGACTGTGCACTACAGACCAATCAACTTGAGCAGTT 394
||.|||.||||||||.||.|||.|||..|||||..||||||.|||.|||||||||||.|||||..|||..||||
Sbjct 741 GCTATCAGAATATGAAAGCGGGCCAGACTGCCCACCTCAGAATGTACACTACAGACCCATCAATGTGAATAGTT 814
Query 395 CAGAGAACAAAATAGTCAATGTTAGCCTGGCAGATCTTAGAGGTGGAAATCGCCCCAATACAGGGCCCTTATAC 468
|.||...||||...||.|||||.|||.||||||||.|..|.|||||.|.||.|||.|||.||||||||.||..|
Sbjct 815 CTGACGGCAAAGCGGTGAATGTCAGCTTGGCAGATGTCCGGGGTGGGAGTCACCCAAATGCAGGGCCCCTAGCC 888
Query 469 ACAGAGGCCGATCGAGTCATACAGAGAACAAATTCAATGCAGCAGTTGGAACAGTGGATTAAAATCCAGAAGGG 542
|||||||||||.||||||||.||||||||.|||||||||||.|||.|.||.||||||||||||.|||||||.||
Sbjct 889 ACAGAGGCCGACCGAGTCATTCAGAGAACGAATTCAATGCAACAGCTAGAGCAGTGGATTAAAGTCCAGAAAGG 962
Query 543 GAGGGGTCATGAAGAAGAAACCAGGGGAGTAATTTCTTACCAAACATTACCAAGAAATATGCCAAGTCACAGAG 616
..||||||.|||||||||..||||.||||||||||||||.||||||||.|||||||||||||||||.|||||||
Sbjct 963 ACGGGGTCTTGAAGAAGAGCCCAGAGGAGTAATTTCTTATCAAACATTGCCAAGAAATATGCCAAGCCACAGAG 1036
Query 617 CCCAGATTATGGCCCGCTACCCTGAAGGTTATAGAACACTCCCAAGAAACAGCAAGACAAGGCCTGAAAGTATC 690
|||||||..|||||||||.||||||||||||..|.||||||||.||||||||||||||.||.|||||.||||||
Sbjct 1037 CCCAGATCCTGGCCCGCTGCCCTGAAGGTTACCGGACACTCCCGAGAAACAGCAAGACCAGACCTGAGAGTATC 1110
Query 691 TGCAGTGTAACCCCTTCCACTCATGACAAGACATTAGGACCCGGAGCGGAGGAGAAACGGAGGTCCATGAGAGA 764
|||||.||||||.||||...||||||.||||| |||.||.|||||.||.|||||.|||.|.|||||||||||
Sbjct 1111 TGCAGCGTAACCTCTTCTGGTCATGAGAAGAC---AGGGCCGGGAGCAGAAGAGAAGCGGCGATCCATGAGAGA 1181
Query 765 TGACACAATGTGGCAGCTCTACGAATGGCAGCAGCGTCAGTTTTATAACAAACAGAGCACCCTCCCTCGACACA 838
||||||.|||||||||||.|||||.|||||||||||.||||||||..||||.|||||||||||||||||.|||.
Sbjct 1182 TGACACCATGTGGCAGCTGTACGAGTGGCAGCAGCGCCAGTTTTACCACAAGCAGAGCACCCTCCCTCGGCACG 1255
Query 839 GTACT--TTGAGTAGTCCCAAAACCATGGTAAATATTTCTGACCAGACAATGCACTCTATTCCCACATCACCTT 910
| || .||||.|||||||||.|||||||..|..|.|||||||||||.||||||||.||.|||||.|||||||
Sbjct 1256 G--CTGCCTGAGCAGTCCCAAAGCCATGGTGCAGGTGTCTGACCAGACGATGCACTCCATCCCCACGTCACCTT 1327
Query 911 CCCACGGGTCAATAGCTGCTTATCAGGGATACTCCCCTCAACGAACTTACAGATCGGAAGTGTCTTCACCAATT 984
||||.||||||..|||||||||.|||||.|.|||||||||.||.||.|||||.||.||||||.|.||.||.||.
Sbjct 1328 CCCATGGGTCAGCAGCTGCTTACCAGGGCTTCTCCCCTCAGCGGACGTACAGGTCAGAAGTGACCTCGCCCATC 1401
Query 985 CAGAGAGGAGATGTGACAATAGACCGCAGACACAGGGCCCATCACCCTAAGCATGTCTATGTGCCTGACAGAAG 1058
|||||||||||||||||.|||||||||||.||||||.|.|||||||||||||||||||||||..||||||||||
Sbjct 1402 CAGAGAGGAGATGTGACGATAGACCGCAGGCACAGGCCTCATCACCCTAAGCATGTCTATGTAGCTGACAGAAG 1475
Query 1059 GTCAGTGCCAGCTGGCCTGACTTTACAGTCTGTTAGTCCCCAGAGCCTCCAAGGGAAAACG------------- 1119
||||.|||||||||||.|.|||||||||.|||||||||||||||||||||||||.|.||||
Sbjct 1476 GTCAATGCCAGCTGGCTTAACTTTACAGGCTGTTAGTCCCCAGAGCCTCCAAGGCAGAACGCCAGAGGAGCTCA 1549
Query 1120 -------------------------------------------------------------------------- 1119
Sbjct 1550 CACTGCTGCTAATAAAGCTGAGACGGCAGCAGGCAGAGCTGAGTAGTGTCCGGGAGCACACCTTAGCACAGCTC 1623
Query 1120 -------------------------------------------------------------------------- 1119
Sbjct 1624 ATGCAGCTGAAACTTGAGGCCCACAGCCCAAAGAATGAGATTCTTTCACATCATCTCCAAAGGAACACCATATA 1697
Query 1120 -------------------------------------------------------------------------- 1119
Sbjct 1698 TTTGGATCATCAGATGAAAGAAAATGAACCTATTATCACCATGGTTCACACAATGATTGAGAACTCGGCGCTAA 1771
Query 1120 --------------------------------------------------------CTGTCACAAGATGAAGGT 1137
|||||||||||||||.||
Sbjct 1772 GACCACAACTGTACCAACAATTCTTAAGACAGAAGAACAAGATAAGTCTCTATTGTCTGTCACAAGATGAATGT 1845
Query 1138 AGAGGCACATTATACAAATACAGACCTGAAGAAGTAGATATTGATGCCAAGTTAAGCCGATTATGTGAACAAGA 1211
||||||||||||||||||||||||||||||||||.||.||||||||||||.||||||.||||.||||||||.||
Sbjct 1846 AGAGGCACATTATACAAATACAGACCTGAAGAAGCAGGTATTGATGCCAAATTAAGCAGATTGTGTGAACAGGA 1919
Query 1212 TAAAGTGGTGCATGCTCTGGAAGAGAAACTTCAGCAACTCCACAAGGAGAAATACACGCTTGAGCAAGCTTTGC 1285
|||||||||.|..||.|||||.|||||.||.|||||.||.|||||||||||||||||||||||||||||.||||
Sbjct 1920 TAAAGTGGTCCGAGCGCTGGAGGAGAAGCTGCAGCAGCTGCACAAGGAGAAATACACGCTTGAGCAAGCCTTGC 1993
Query 1286 TATCAGCCAGCCAAGAGATAGAAATGCATGCAGATAACCCAGCAGCCATTCAGACAGTGGTGTTACAAAGGGAT 1359
|.||||||||||||||||||||.|||.||||.|||||||||||.||||||||.||.||||||||.||.||||||
Sbjct 1994 TGTCAGCCAGCCAAGAGATAGAGATGAATGCTGATAACCCAGCTGCCATTCAAACTGTGGTGTTGCAGAGGGAT 2067
Query 1360 GATTTACAAAATGGACTGCTTAGTACGTGTCGAGAACTTTCTCGAGCCACTGCCGAATTGGAACGAGCATGGAG 1433
||..|.|||||.||||||||.||.||||||||.|||||.||.|||||||||||.||..||||||||||.|||||
Sbjct 2068 GACCTGCAAAACGGACTGCTGAGCACGTGTCGGGAACTCTCCCGAGCCACTGCTGAGCTGGAACGAGCCTGGAG 2141
Query 1434 AGAATATGATAAGTTAGAATACGATGTAACTGTTACCAGGAACCAGATGCAAGAGCAGCTGGATCACCTTGGTG 1507
|||||||||.|||||.|||||.|||||.||||||||||||.||||||||||.|..|||||.||.|.||||||.|
Sbjct 2142 AGAATATGACAAGTTGGAATATGATGTGACTGTTACCAGGGACCAGATGCAGGGTCAGCTCGACCGCCTTGGAG 2215
Query 1508 AAGTTCAGACGGAATCAGCAGGAATTCAGCGTGCACAGATTCAGAAAGAACTTTGGCGAATTCAGGATGTCATG 1581
||||.||||..||.||.|||||||||||.||.|||||||||||.||.||.||.|||.|||||||.|||||||||
Sbjct 2216 AAGTGCAGAGTGAGTCGGCAGGAATTCAACGGGCACAGATTCAAAAGGAGCTCTGGAGAATTCAAGATGTCATG 2289
Query 1582 GAAGGGCTGAGTAAACATAAGCAGCAAAGAGGTACTACAGAAATAGGTATGATAGGATCAAAGCCTTTCTCAAC 1655
||.|||.||||.|||||.||.|||||||||||..||.||||||.||||.||..|||||||||||||||||||.|
Sbjct 2290 GAGGGGTTGAGCAAACACAAACAGCAAAGAGGCTCTTCAGAAACAGGTCTGGCAGGATCAAAGCCTTTCTCATC 2363
Query 1656 AGTTAAGTACAA-------------------------------------------------------------- 1667
||||||||||||
Sbjct 2364 AGTTAAGTACAAGAGCGAGGAAGAGGAAGTAGTCCCACCTCGGCCTCCACTTCCTCGGTCTTATGACTTTACAG 2437
Query 1668 -------------------------------------------------------------------------- 1667
Sbjct 2438 AGCAGCCTCCCATAATCCCCCCTCTGCCCAGTGATAGCAGCTCCTTGCTCTGTTATAGCAGGGGCCCCGTGCAT 2511
Query 1668 --------------------------------------------AAATGAG----------GGTCCAGATTATA 1687
||||| | |||||||||||||
Sbjct 2512 CTGCCTGAAGACAAGAAGATTCATCAAGTTCAAGGATATCCAAGAAATG-GATCTCACTGTGGTCCAGATTATA 2584
Query 1688 GACTCTACAAGAGTGAACCAGAGTTAACAACAGTGGCAGAAGTTGATGAATCTAATGGAGAAGAAAAATCAGAA 1761
||||||||||||||||.|||||||||||.||||||||||||||.|||||||||||.|||||||||||.|||||.
Sbjct 2585 GACTCTACAAGAGTGAGCCAGAGTTAACCACAGTGGCAGAAGTCGATGAATCTAACGGAGAAGAAAAGTCAGAG 2658
Query 1762 CCTGTTTCAGAGATAGAAACTTCAGTTGTTAAAGGTTCCCACTTTCCTGTTGGAGTAGTCCCTCCAAGAGCAAA 1835
||.|||||.||||.||||.||.||||.||||||||||||||.|||||.||.|| |||.||||..|||.||||
Sbjct 2659 CCAGTTTCTGAGACAGAAGCTCCAGTCGTTAAAGGTTCCCATTTTCCAGTCGG---AGTTCCTCTGAGAACAAA 2729
Query 1836 ATCACCAACACCCGAATCTTCGACAATAGCTTCCTATGTAACCTTGAGGAAAACTAAGAAGATGATGGATCTAA 1909
.|||||.||||||||.||.||.||.||||||||||||||.|||||||||||.||||||||||||.||||.||||
Sbjct 2730 GTCACCCACACCCGAGTCCTCCACGATAGCTTCCTATGTGACCTTGAGGAAGACTAAGAAGATGGTGGAGCTAA 2803
Query 1910 GAACGGAAAGACCAAGAAGTGCAGTGGAACAGCTCTGTTTGGCTGAAAGTACTCGACCAAGGATGACTGTGGAA 1983
||||||||||||||||||||||.|||||.|||||.|||.|||||||.|||.|||||||.||.||||||||||||
Sbjct 2804 GAACGGAAAGACCAAGAAGTGCCGTGGAGCAGCTGTGTCTGGCTGAGAGTGCTCGACCTAGAATGACTGTGGAA 2877
Query 1984 GAGCAAATGGAAAGAATAAGAAGACATCAACAAGCGTGCCTGAGGGAGAAGAAAAAAGGGTTAAATGTTATCGG 2057
|||||..|.||.||.||.||.|||||.||.||.||.|||||||||||||||||.||.|||.|.|.|||..||||
Sbjct 2878 GAGCAGCTAGAGAGGATCAGGAGACACCAGCAGGCCTGCCTGAGGGAGAAGAAGAAGGGGCTGAGTGTCCTCGG 2951
Query 2058 TGCTTCAGACCAGTCACCCTTACAAAGCCCTTCAAATTTAAGGGATAATCCATTTAGGACTACTCAGACTCGAA 2131
||||||.|| |||.|||.|..|.|||||.|.||||.|.|||..|||||||||||.||
Sbjct 2952 TGCTTCCGA------------------CCCGTCAGACGTGAGGGACAGTCCACTCAGGCTTACTCAGACTCTAA 3007
Query 2132 GGAGGGATGA------TAAGGAACTGGACACTG-CCATTAGAGAAAATGATGTAAAGCCAGACCATGAAACTCC 2198
|||||||||| ||||||.||.|||||.| ||| .||||||||||||||||||||||||.|.||.|||||
Sbjct 3008 GGAGGGATGATAACGTTAAGGAGCTAGACACCGTCCA-CAGAGAAAATGATGTAAAGCCAGACTACGAGACTCC 3080
Query 2199 TGCA--ACAGAAATTGT--TCAACTAAAAGAAACCGAACCCCAAAATGTGGACTTCAGCAAAGAGTTAAAAAAA 2268
.||| |||| ||| |||.|||.||||..|.||||||||.||||..|||.||.|||.|.||.||||||
Sbjct 3081 AGCAGCACAG----TGTGCTCACCTAGAAGACGCTGAACCCCAGAATGCAGACATCGGCAGAAAGCTAAAAA-- 3148
Query 2269 ACTGAAAACATTTCATATGAAATGCTTTTTGAACCTGAGCCAAATGGAGTAAATTCTGTGGAAATGATGGATAA 2342
.||.|||||||||||....||||||.|||||||||.|...|||||.||||.|||.|||.||
Sbjct 3149 -------------GATCTGAAATGCTTTACACACCTGAACCAAATGGAATGGCTTCTGAGGAAGTGACGGAGAA 3209
Query 2343 AGAAAGAAACAAAGACAAAATGCCTGAGGATGTTACATTCAGCCCTCAAGATGAAAC-------ACAGACCGCA 2409
.||||||.|.|||||..|..|||.||..||||...|||.|||||||||.||.||.|| |||||.|
Sbjct 3210 GGAAAGACAGAAAGAGCAGGTGCATGCCGATGGGTCATGCAGCCCTCAGGAAGAGACGGCCATGACAGAGC--- 3280
Query 2410 AATCATAAACCAGAAGAGCATCCTGAAGAAAATACAAAGAACAGTGTTGACGAACAGGAAGAAACTGTTATTTC 2483
||||.| ..||||..|..|||||.||| .||.|| |||.||.|.||..|||||||||||.||..|||
Sbjct 3281 -ATCAGA---TGGAAGGCCCCCCTGAGGAA---GCAGAG---AGTCTTCATGAGGAGGAAGAAACTCTTGCTTC 3344
Query 2484 TTACGAATCAACTCCTGAGGTTTCTAGAGGA-AATCAAACAATGGCAGTGAAAAGTCTGTCCCCATCTCCTGAG 2556
.|..||..||.||||||||.||.|||| ||| ||||||||.| ||||||.||||||||||||.||||||||.
Sbjct 3345 CTGTGAGCCAGCTCCTGAGATTCCTAG-GGAGAATCAAACCA---CAGTGAGAAGTCTGTCCCCGTCTCCTGAC 3414
Query 2557 TCCT---CGGCATCGCCAGTTCCATCCACTCAGCCGCAGCTCACAGAAGGATCACATTTCATGTGTGTG 2622
|||| ||||| .|||.|||..||||||..||.|||||||..||||||||.|||||||||||||||
Sbjct 3415 TCCTCCACGGCA---GCAGATCCGCCCACTCCTCCACAGCTCAGGGAAGGATCGCATTTCATGTGTGTG 3480
