Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12044
- Subject:
- XR_001748772.1
- Aligned Length:
- 3456
- Identities:
- 1375
- Gaps:
- 2013
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGTTCCCTCCTCCCTCGGCAGCCGCGGCGGCAGCAGGAGAAGGCGGCGGCGGCGGCTAGGGATCAGACATGGCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCGGATCTGAACCTGGAGTGGATCTCCCTGCCCCGGTCCTGGACTTACGGGATCACCAGGGGCGGCCGAGTCTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTTCATCAACGAGGAGGCCAAGAGCACCACCTGGCTGCACCCCGTCACCGGCGAGGCGGTGGTCACCGGACACC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGCGGCAGAGCACAGATTTGCCTACTGGCTGGGAAGAAGCATATACTTTTGAAGGTGCAAGATACTATATAAAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CATAATGAAAGGAAAGTGACCTGCAAACATCCAGTCACAGGACAACCATCACAGGACAATTGTATTTTTGTAGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAATGAACAGACTGTTGCAACCATGACATCTGAAGAAAAGAAGGAACGGCCAATAAGTATGATAAATGAAGCTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTAACTATAACGTGACTTCAGATTATGCAGTGCATCCAATGAGCCCTGTAGGCAGAACTTCACGAGCTTCAAAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAAGTTCATAATTTTGGAAAGAGGTCAAATTCAATTAAAAGGAATCCTAATGCACCGGTTGTCAGACGAGGTTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCTTTATAAACAGGACAGTACTGGCATGAAATTGTGGAAGAAACGCTGGTTTGTGCTTTCTGACCTTTGCCTCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTTATTATAGAGATGAGAAAGAAGAGGGTATCCTGGGAAGCATACTGTTACCTAGTTTTCAGATAGCTTTGCTT 740
Query 1 ------------------------------------------------------ATGCGGACCTATTATTTCTG 20
||||||||||||||||||||
Sbjct 741 ACCTCTGAAGATCACATTAATCGCAAATATGCTTTTAAGGCAGCCCATCCAAACATGCGGACCTATTATTTCTG 814
Query 21 CACTGATACAGGAAAGGAAATGGAGTTGTGGATGAAAGCCATGTTAGATGCTGCCCTAGTACAGACAGAACCTG 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CACTGATACAGGAAAGGAAATGGAGTTGTGGATGAAAGCCATGTTAGATGCTGCCCTAGTACAGACAGAACCTG 888
Query 95 TGAAAAGAGTGGACAAGATTACATCTGAAAATGCACCAACTAAAGAAACCAATAACATTCCCAACCATAGAGTG 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TGAAAAGAGTGGACAAGATTACATCTGAAAATGCACCAACTAAAGAAACCAATAACATTCCCAACCATAGAGTG 962
Query 169 CTAATTAAACCAGAGATCCAAAACAATCAAAAAAACAAGGAAATGAGCAAAATTGAAGAAAAAAAGGCATTAGA 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CTAATTAAACCAGAGATCCAAAACAATCAAAAAAACAAGGAAATGAGCAAAATTGAAGAAAAAAAGGCATTAGA 1036
Query 243 AGCTGAAAAATATGGATTTCAGAAGGATGGTCAAGATAGACCCTTAACAAAAATTAATAGTGTAAAGCTGAATT 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGCTGAAAAATATGGATTTCAGAAGGATGGTCAAGATAGACCCTTAACAAAAATTAATAGTGTAAAGCTGAATT 1110
Query 317 CTCTGCCATCTGAATATGAGAGTGGGTCAGCATGCCCTGCTCAGACTGTGCACTACAGACCAATCAACTTGAGC 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CTCTGCCATCTGAATATGAGAGTGGGTCAGCATGCCCTGCTCAGACTGTGCACTACAGACCAATCAACTTGAGC 1184
Query 391 AGTTCAGAGAACAAAATAGTCAATGTTAGCCTGGCAGATCTTAGAGGTGGAAATCGCCCCAATACAGGGCCCTT 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGTTCAGAGAACAAAATAGTCAATGTTAGCCTGGCAGATCTTAGAGGTGGAAATCGCCCCAATACAGGGCCCTT 1258
Query 465 ATACACAGAGGCCGATCGAGTCATACAGAGAACAAATTCAATGCAGCAGTTGGAACAGTGGATTAAAATCCAGA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ATACACAGAGGCCGATCGAGTCATACAGAGAACAAATTCAATGCAGCAGTTGGAACAGTGGATTAAAATCCAGA 1332
Query 539 AGGGGAGGGGTCATGAAGAAGAAACCAGGGGAGTAATTTCTTACCAAACATTACCAAGAAATATGCCAAGTCAC 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AGGGGAGGGGTCATGAAGAAGAAACCAGGGGAGTAATTTCTTACCAAACATTACCAAGAAATATGCCAAGTCAC 1406
Query 613 AGAGCCCAGATTATGGCCCGCTACCCTGAAGGTTATAGAACACTCCCAAGAAACAGCAAGACAAGGCCTGAAAG 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AGAGCCCAGATTATGGCCCGCTACCCTGAAGGTTATAGAACACTCCCAAGAAACAGCAAGACAAGGCCTGAAAG 1480
Query 687 TATCTGCAGTGTAACCCCTTCCACTCATGACAAGACATTAGGACCCGGAGCGGAGGAGAAACGGAGGTCCATGA 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TATCTGCAGTGTAACCCCTTCCACTCATGACAAGACATTAGGACCCGGAGCGGAGGAGAAACGGAGGTCCATGA 1554
Query 761 GAGATGACACAATGTGGCAGCTCTACGAATGGCAGCAGCGTCAGTTTTATAACAAACAGAGCACCCTCCCTCGA 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GAGATGACACAATGTGGCAGCTCTACGAATGGCAGCAGCGTCAGTTTTATAACAAACAGAGCACCCTCCCTCGA 1628
Query 835 CACAGTACTTTGAGTAGTCCCAAAACCATGGTAAATATTTCTGACCAGACAATGCACTCTATTCCCACATCACC 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CACAGTACTTTGAGTAGTCCCAAAACCATGGTAAATATTTCTGACCAGACAATGCACTCTATTCCCACATCACC 1702
Query 909 TTCCCACGGGTCAATAGCTGCTTATCAGGGATACTCCCCTCAACGAACTTACAGATCGGAAGTGTCTTCACCAA 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TTCCCACGGGTCAATAGCTGCTTATCAGGGATACTCCCCTCAACGAACTTACAGATCGGAAGTGTCTTCACCAA 1776
Query 983 TTCAGAGAGGAGATGTGACAATAGACCGCAGACACAGGGCCCATCACCCTAAGCATGTCTATGTGCCTGACAGA 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TTCAGAGAGGAGATGTGACAATAGACCGCAGACACAGGGCCCATCACCCTAAGCATGTCTATGTGCCTGACAGA 1850
Query 1057 AGGTCAGTGCCAGCTGGCCTGACTTTACAGTCTGTTAGTCCCCAGAGCCTCCAAGGGAAAACGCTGTCACAAGA 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 AGGTCAGTGCCAGCTGGCCTGACTTTACAGTCTGTTAGTCCCCAGAGCCTCCAAGGGAAAACGC---------- 1914
Query 1131 TGAAGGTAGAGGCACATTA------TACAAATACAGACCTGAAGAAGTAGATATTGATGCCAAGTTAAGCCGAT 1198
.||||| |..||| |.|.||||.|| |||| ||.|.|| ..|||||||
Sbjct 1915 ------CAGAGG-AGCTTACGCTGCTGCTAATAAAG--CTGA-------------GACGGCA--GCAAGCCGA- 1963
Query 1199 TA-TGTGAACAAGATAAAGTGGTGCATGCTCTGGAAGAG-AAACTTCAGCAACTCCACAAGGAG--AAATACAC 1268
| || |||.|| .||.|| ||| |.||.|.||| ||..|.||.|.|| |||
Sbjct 1964 -ACTG------------AGTAGT-----ATCCGG--GAGCATACGTTAGC-ACAGCTCATGCAGCTAAA----- 2011
Query 1269 GCTTGAGCAAGCTTTGCTATCAGC---CAGCCAAGAGATAGAAATGCATGCAGATAACC----------CAGCA 1329
||||||| || |||||.|.|||..|||||.|.|.||.||.|.| ||.||
Sbjct 2012 GCTTGAG---------------GCCCACAGCCCAAAGAATGAAATTCTTTCACATCATCTCCAAAGGAACACCA 2070
Query 1330 GCCATTCAGA----CAG---TGGTGTTACAAAGGGATGATTTACAAAATGGACTGCTTAGTACGTG-TCGAGAA 1395
...|||..|| ||| ||.||| |||..||||.| |||| ||| || ||
Sbjct 2071 TATATTTGGATCATCAGCTATGCTGT---AAACTGATGTT-------------TGCT--GTA--TGCTC----- 2119
Query 1396 CTTTCTCGAGCCACTGCCGAATTGGAACGAGCATGGAGAGAATATGATAAGTTAGAATACGATGTAACTGTTAC 1469
||| ||| |||.|||..|| || ||.||||.|||| |.||.||
Sbjct 2120 ----CTC------CTG----ATTTGAAATAG-AT-GAAAGAAAATGA------------------ACCTATT-- 2157
Query 1470 CAGGAACCAGATGCAAGAGCAGCTGGATCACCTTGGTGAAGTTCAGACGGAATCAGCAGGAATTCAGCGTGCAC 1543
||||||.|| |||||.|| |||
Sbjct 2158 --------------------------ATCACCATG-----GTTCACAC--AAT--------------------- 2177
Query 1544 AGATTCAGAAAGAACTTTGGCGAATTCAGGATGTCATGGAAGGGCTGAGTA----AACATAAGCAGCAAAGAGG 1613
||||.|||| .|.||| |||.|| | |||...|.||||||
Sbjct 2178 -GATTGAGAA-----CTCGGC----------------------GCTAAG-ACCCCAACTGTACCAGCAA----- 2217
Query 1614 TACT----ACAGAAATAGGTATGATAGGATCAAAGCCTTTCTCAACAGTTAAGTACAAAAATGAGGGTCCAGAT 1683
|.|| |||||| ||.|| ||.|||||..|
Sbjct 2218 TTCTTAAGACAGAA-------------GAGCA--------------AGATAAGTCTA----------------- 2247
Query 1684 TATAGACTCT-ACAAGAGTGAACCAGAGTTAACAACAGTGGCAGAAGTTGATGAATCTAATGGAGAAGAAAAAT 1756
|||.|.||.| |||||| |||| .|| ||.|||
Sbjct 2248 TATTGTCTGTCACAAGA-TGAA----GGT-------AGAGGC-------------------------------- 2277
Query 1757 CAGAACCTGTTTCAGAGATAGAAACTTCAGTTGTTAAAGGTTCCCACTTTCCTGTTGGAGTAGTCCCTCCAAGA 1830
Sbjct 2278 -------------------------------------------------------------------------- 2277
Query 1831 GCAAAATCACCAACACCCGAATCTTCGACAATAGCTTCCTATGTAACCTTGAGGAAAACTAAGAAGATGATGGA 1904
Sbjct 2278 -------------------------------------------------------------------------- 2277
Query 1905 TCTAAGAACGGAAAGACCAAGAAGTGCAGTGGAACAGCTCTGTTTGGCTGAAAGTACTCGACCAAGGATGACTG 1978
Sbjct 2278 -------------------------------------------------------------------------- 2277
Query 1979 TGGAAGAGCAAATGGAAAGAATAAGAAGACATCAACAAGCGTGCCTGAGGGAGAAGAAAAAAGGGTTAAATGTT 2052
Sbjct 2278 -------------------------------------------------------------------------- 2277
Query 2053 ATCGGTGCTTCAGACCAGTCACCCTTACAAAGCCCTTCAAATTTAAGGGATAATCCATTTAGGACTACTCAGAC 2126
Sbjct 2278 -------------------------------------------------------------------------- 2277
Query 2127 TCGAAGGAGGGATGATAAGGAACTGGACACTGCCATTAGAGAAAATGATGTAAAGCCAGACCATGAAACTCCTG 2200
Sbjct 2278 -------------------------------------------------------------------------- 2277
Query 2201 CAACAGAAATTGTTCAACTAAAAGAAACCGAACCCCAAAATGTGGACTTCAGCAAAGAGTTAAAAAAAACTGAA 2274
Sbjct 2278 -------------------------------------------------------------------------- 2277
Query 2275 AACATTTCATATGAAATGCTTTTTGAACCTGAGCCAAATGGAGTAAATTCTGTGGAAATGATGGATAAAGAAAG 2348
Sbjct 2278 -------------------------------------------------------------------------- 2277
Query 2349 AAACAAAGACAAAATGCCTGAGGATGTTACATTCAGCCCTCAAGATGAAACACAGACCGCAAATCATAAACCAG 2422
Sbjct 2278 -------------------------------------------------------------------------- 2277
Query 2423 AAGAGCATCCTGAAGAAAATACAAAGAACAGTGTTGACGAACAGGAAGAAACTGTTATTTCTTACGAATCAACT 2496
Sbjct 2278 -------------------------------------------------------------------------- 2277
Query 2497 CCTGAGGTTTCTAGAGGAAATCAAACAATGGCAGTGAAAAGTCTGTCCCCATCTCCTGAGTCCTCGGCATCGCC 2570
Sbjct 2278 -------------------------------------------------------------------------- 2277
Query 2571 AGTTCCATCCACTCAGCCGCAGCTCACAGAAGGATCACATTTCATGTGTGTG 2622
Sbjct 2278 ---------------------------------------------------- 2277
