Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12046
- Subject:
- XR_001781878.1
- Aligned Length:
- 5765
- Identities:
- 1282
- Gaps:
- 4323
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAGGCCCGCCTTCCGCTCGCCCGCGCGGCAGCGGGTCTCAAGAGCCGAGCGCTTTGCAAGGGCCTTCGCGGGTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGGCGGCGCCGGGGTCGGTGAGGGTCGACCGGCTGTGGTCGGGCTGCGGGCGGCTCGGGCAGGTCGCGGGCGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CACAGGTGGAAGAAGAAAGGTGCCACTTTGGCATGAAGATAGACTCACTTAGACGTCAATCTTTTAAGCTGAGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCATTGTGATTTCCAATAATTGAGGCAGTGGTTCTAAAAGCTGTCTACATTAATGAAAAGAGCAATGTGGCCAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTTGACTAAGCCGCCAGTGTGTACAGCGCGGGCAGGACGACACCGGGTCTCGACGGACTTGTGCATGTTAGCAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TATAGATTTATGTAAGGTGGTTTAAAACTCTGGTCTTTTAAAGTAGTCTTAACTGCTCATAATATGGAGACATA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGAGAGTCCCTCTCCTCTCCCGCGTGAGCCCGCAGGAGAAGCGATGATGGAGAACCGAGCTTGCCCCTTCCAAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGCTGCCCCATGAACAGTCTCCACCACCTCCCCTGCAAACGTCCAGTGATGCAGAGGTAATGGACGTTGGCTCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGTGGTGATGGACAGTCCGAACCTCCTGCCGACGACCCATTCAACTTCTACGGAGCTTCTCTTCTCTCCAAAGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATCCTTCTCTAAGGGCCGCCTCCTCATAGACCCGAACTGTAGTGGCCACAGCCCGCGCACTGCCCGGCACGCAC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTGCGGTCCGGAAGTTCTCCCCTGACCTTAAGTTGCTTAAGGATGTAAAGATTAGCGTGAGCTTTACTGAGAGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGCAGGAGTAAGGACAGGAAGGTGCTGTACACAGGAGTAGAACGCAGCACTCGGCCTGAGTGTGGCCAGCTCCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TAGTCCTGTCAGTGGGGACGTGCATGCTTGTCCCTTTGGCGGGAGTGTTGGTAATGGGGTAGGCCTAGGGGGTG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGAGTGCAGATAAGAAGGATGAGGAAAATGAGCTGGATCAGGAAAAGAGAGTGGAGTATGCAGTGCTCGATGAG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTAGAAGATTTTACTGACAATTTGGAGCTAGATGAAGAAGGAACAGGCGGGTTCACGGCTAAAGCAATCGTTCA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAGAGACAGAGTGGATGAAGAGGCCTTGAATTTCTCCTATGAGGATGACTTTGACAATGATGTGGACGCTTTAC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TAGAAGAAGGTCTCTGTGCTCCCAAGAAGAGGCGAATGGAGGAAAAATATGGCGGAGACAGTGATCATCCATCT 1258
Query 1 ------------------------ATGATGACCAAGATTAAAACAGTGCTCAAAAGTCGTGGCCGCCCACCTAC 50
|||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 1259 GATGGAGAGACAAGTGTACAGCCAATGATGACCAAGATTAAAACAGTGCTCAAAAGTCGTGGCCGTCCACCTAC 1332
Query 51 AGAGCCGCTGCCCGACGGGTGGATCATGACATTCCATAACTCTGGAGTCCCGGTGTACCTACACAGAGAGTCTC 124
||||||..||||.||.||.|||||||||||.||.|||||.|||||||||||.||.|||||.|||||||||||||
Sbjct 1333 AGAGCCATTGCCTGATGGATGGATCATGACTTTTCATAATTCTGGAGTCCCTGTATACCTGCACAGAGAGTCTC 1406
Query 125 GGGTGGTCACCTGGTCCAGGCCATACTTCTTGGGAACGGGAAGCATACGGAAACACGACCCTCCTCTGAGTAGC 198
|.||||||||.||||||||.||.||||||||||||||.|||||||||||||||||.||.||||||||.||.||.
Sbjct 1407 GAGTGGTCACTTGGTCCAGACCCTACTTCTTGGGAACAGGAAGCATACGGAAACATGATCCTCCTCTAAGCAGT 1480
Query 199 ATCCCTTGTCTGCATTATAAGAAAATGAAGGACAACGAGGAACGGGAGCAAAGCAGTGACCTCACCCCTAGTGG 272
|||||.||.||.|||||||||||||||||||||||.||||||||.||.||||.|.||||.||..||||.|||||
Sbjct 1481 ATCCCCTGCCTACATTATAAGAAAATGAAGGACAATGAGGAACGAGAACAAAACTGTGATCTTGCCCCCAGTGG 1554
Query 273 GGATGTGTCCCCCGTCAAGCCCCTGAGCCGATCTGCAGAGCTGGAGTTTCCC-CTGGATGAGCCTGACTCTATG 345
.||.|||||.||.|||||||||.||.|.||.|||||||||.|||| |||||| |||||.|||||||||||.|||
Sbjct 1555 AGAGGTGTCACCTGTCAAGCCCTTGGGTCGGTCTGCAGAGTTGGA-TTTCCCTCTGGAAGAGCCTGACTCCATG 1627
Query 346 GGTGCTGACCCGGGGCCCCCGGACGAGAAAGACCCACTAGGGGCTGAGGCAGCCCCTGGGGCCCTGGGGCAGGT 419
||||..|||.|.|||.||..|||.|||||.||||||.|.|||||||||||||||.||||.||||||||.||.||
Sbjct 1628 GGTGGAGACTCAGGGTCCATGGATGAGAAGGACCCATTGGGGGCTGAGGCAGCCGCTGGAGCCCTGGGACAAGT 1701
Query 420 GAAGGCCAAAGTCGAGGTGTGCAAAGATGAATCCGTTGATCTCGAGGAATTTCGAAGCTACCTGGAGAAGCGTT 493
||||||.|||||.||||||||||||||||||||.||||||||.|||||||||||.|..|||||.||||||||||
Sbjct 1702 GAAGGCTAAAGTTGAGGTGTGCAAAGATGAATCAGTTGATCTGGAGGAATTTCGTAATTACCTTGAGAAGCGTT 1775
Query 494 TTGACTTTGAGCAAGTTACTGTGAAAAAATTCAGGACTTGGGCTGAGCGGCGGCAATTCAATCGGGAAATGAAG 567
||||||||||.|||||.|||||||||||||||||||||||||||||||||||.||.|||||.||.||.||||||
Sbjct 1776 TTGACTTTGAACAAGTAACTGTGAAAAAATTCAGGACTTGGGCTGAGCGGCGTCAGTTCAACCGTGAGATGAAG 1849
Query 568 CGGAAGCAGGCGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGAAGCTCATTACTTTATCAGTGCAAGATGC 641
|||||||||||.|||||.||||||||||||.||||||||||.||||||||.||.|||.||||.||.||||||||
Sbjct 1850 CGGAAGCAGGCCGAGTCAGAGAGGCCCATCCTGCCAGCCAACCAGAAGCTGATCACTCTATCTGTACAAGATGC 1923
Query 642 ACCCACAAAGAAAGAGTTTGTTATTAACCCCAACGGGAAATCCGAGGTCTGCATCCTGCACGAGTACATGCAGC 715
|||||||||||||||||||||.||.||.|||||.|||||.||.|||||.||||||||||||||.||||||||||
Sbjct 1924 ACCCACAAAGAAAGAGTTTGTCATCAATCCCAATGGGAAGTCTGAGGTTTGCATCCTGCACGAATACATGCAGC 1997
Query 716 GTGTCCTCAAGGTCCGCCCTGTCTATAATTTCTTTGAATGTGAGAACCCAAGTGAGCCTTTTGGTGCCTCGGTG 789
||||||||||||||||||||||.|||||||||||||||||||||||.|||||||||||||||||||||||.|||
Sbjct 1998 GTGTCCTCAAGGTCCGCCCTGTTTATAATTTCTTTGAATGTGAGAATCCAAGTGAGCCTTTTGGTGCCTCCGTG 2071
Query 790 ACCATTGATGGTGTGACTTACGGATCTGGAACTGCAAGCAGCAAAAAACTTGCGAAGAATAAAGCTGCCCGAGC 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2072 ACCATTGATGGTGTGACTTACGGATCTGGAACTGCAAGCAGCAAAAAACTTGCGAAGAATAAAGCTGCCCGAGC 2145
Query 864 TACACTGGAAATCCTCATCCCTGACTTTGTTAAACAGACCTCTGAAGAGAAGCCCAAAGACAGTGAAGAACTCG 937
.||.||||||||.||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||||.|
Sbjct 2146 CACCCTGGAAATTCTCATCCCTGACTTTGTTAAACAGACCTCTGAGGAGAAGCCTAAAGACAGTGAAGAACTGG 2219
Query 938 AGTATTTTAACCACATCAGCATCGAGGACTCGCGGGTCTACGAGCTGACCAGCAAGGCTGGGCTGTTGTCTCCA 1011
|||||||||||||||||||.||.|||||.||.||.|||||.||||||||.||||||||||||||||||||||||
Sbjct 2220 AGTATTTTAACCACATCAGTATTGAGGATTCACGAGTCTATGAGCTGACAAGCAAGGCTGGGCTGTTGTCTCCA 2293
Query 1012 TATCAGATCCTCCACGAGTGCCTTAAAAGAAACCATGGGATGGGTGACACGTCTATCAAGTTTGAAGTGGTTCC 1085
||||||||||||||.|||||||||||||||||||||||.|||||||||||.||.||||||||||||||||||||
Sbjct 2294 TATCAGATCCTCCATGAGTGCCTTAAAAGAAACCATGGAATGGGTGACACATCCATCAAGTTTGAAGTGGTTCC 2367
Query 1086 TGGGAAAAACCAGAAGAGTGAATACGTCATGGCGTGTGGCAAGCACACAGTGCGCGGGTGGTGTAAGAACAAGA 1159
||||||||||||||||||||||||.||.|||||.||.|||||.||||||||||||||||||||||||||.||..
Sbjct 2368 TGGGAAAAACCAGAAGAGTGAATATGTTATGGCATGCGGCAAACACACAGTGCGCGGGTGGTGTAAGAATAAAC 2441
Query 1160 GAGTTGGAAAGCAGTTAGCCTCACAGAAGATCCTTCAGCTGCTGCACCCACATGTCAAGAACTGGGGGTCTTTA 1233
|||||||.||.||.|||||.||.|||||.|||||||||||.||||||||||||||||||||||||||.||.|||
Sbjct 2442 GAGTTGGGAAACAATTAGCATCTCAGAAAATCCTTCAGCTACTGCACCCACATGTCAAGAACTGGGGTTCCTTA 2515
Query 1234 CTGCGCATGTATGGCCGTGAGAGCAGCAAGATGGTCAAGCAGG-----AG------ACATC----GGACAAGAG 1292
||.|||||||||||.||||||||||||||.||||||||||||| || ||||| || .||
Sbjct 2516 CTACGCATGTATGGTCGTGAGAGCAGCAAAATGGTCAAGCAGGTAACCAGACTGTCACATCTTTTGG----CAG 2585
Query 1293 T------------GTGATTGAGCT---------------------------------GCAGCAGTA-------- 1313
| .||.||..||| ||||||.||
Sbjct 2586 TTGCTCTGCTTCCCTGTTTTTGCTTTGGCTTGGGGCTTGCTGTCAAGGTCAGGCTTGGCAGCACTACTTTTAAT 2659
Query 1314 ---------------------------TGCCA-AGAAG---------AA--CAAG----------CCCAACCTG 1338
|||.| .|||| || |||| |||||.|
Sbjct 2660 TATGACTGTCTCTGCTGTGCTGTGCTGTGCTATGGAAGTGATTGTGCAAGCCAAGGGTGGGAGTACCCAAGC-- 2731
Query 1339 CACA---TCCTCAGCAAGCT-CCAAGAGGAGATGAAGAGGCTAGCTGAG---GAA-----AGGGAG------GA 1394
|||| ||||||..||.|| || |||| ||.|.|| ||| |||||| .|
Sbjct 2732 CACATTTTCCTCATGAATCTGCC--------------AGGC-AGTTAAGTATGAACCATTAGGGAGCAGTCCTA 2790
Query 1395 GACT--------CGAAAGAAGCC---CA--AGATG------------------------TCCATTGT-----GG 1426
|||| .||.|.||.|| || ||||| |..||||| ||
Sbjct 2791 GACTATCAGGCCTGACACAAACCAGACAGTAGATGCAGGCAGTGAACACTACCTGATGTTGAATTGTGTGAAGG 2864
Query 1427 CGTCCGC---CCAGCC---TGGCGGTGAGCC------------CCT-------------GTGCACCGTGGACGT 1469
|.| || |||||| ||||.|| || ||| ||.|.|.|| |||.|
Sbjct 2865 CTT--GCAAACCAGCCCTTTGGCAGT---CCTCAAGACTGTATCCTTGTTTAGTTGAAGGTTCTCAGT-GACTT 2932
Query 1470 G------------------------------------------------------------------------- 1470
.
Sbjct 2933 AAAGAATATGGGTATTATCTGTTTTGTTTCTGAGGGTTTTGCCCAGATCTCAGAATTTAAATAAGTCTAAACCT 3006
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3007 AATGGGTATGGGAAGTAATGGGAAATTATGTTGGGTAGTGATGGAACTCAGCTGTATCACAAGCATTTTTTTAC 3080
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3081 ATTTTCCCCTAATATATGCCGAAACTACCTGGATCATCAGGATCTCATTGTTTAAACGAGTACAGGTAGAGACC 3154
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3155 CTGAAGTCTGTGCTCTGGACCCTTGAGCTACCCTGCCTTGAGCTGAGCTAATAGTCTAGAGCAACGAAGCACCC 3228
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3229 CTTCAGATTCTCCAAGACTCAAACTTGTCCCTGTCCTTGCTCAAGGCAGGAGGAGTCCAGGAGCCACATGGAGA 3302
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3303 ACGTAAATAATATAAGAGTACTTCTTTTTTCTGATTCCTCTCCCTCCTACTGCTGGGGATCATACATGGGGCTT 3376
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3377 TGTACAGGCCAAACAAGGACTGAGTTGCATCTTCAGCCTGAAAAGAAGCATTTTTCATGAGTTGAAATGTAGGT 3450
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3451 ACCGTGTAGGTACGTAGTCTGGGACTGAGACAGAGGGAACGTTGCTGCAACCATGGACAGAGGTTTCCTTCAAC 3524
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3525 TGGAGAGTGAATGGCCCTTGTCTGGCACAGGAGTTCTGGCATTCTAAGACATAGTGAGCATCCTTACTGTGGCC 3598
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3599 TCCAAGCCAAGAAGGGAAGAGAACCAAAGAGAACAGCTGGGCAGACTGTTTTGGTTGTGTTATGTCTCAGTTGG 3672
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3673 CTTCAGCCACTGTCAGAGGGTTCCTGGCATAGTGAGTACTTGACTTTCATACTCAGCTAGTAAACACACAGAGG 3746
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3747 TGTGATCATGGAGGAAGGAAGGAACTGTCTGGGAGACCAGGGAGCACAGGGCTGTGCTTATACCCTATATTTAT 3820
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3821 ATGTCAGCTGCAAATGCTTTATCACAGGTAGGCCACTGGTGTGGACTTGTGCCTTGCCAAGCCCTTGCACTCTT 3894
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3895 GATTTGGGTGGATACTGCTACTTGAGCATACTGCTACTTGGCAGTTCTGAGAGCAGGCTTTGGGTCCCTAGGAG 3968
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3969 ACCTCTGACAAGAGTGTGATAGAGCTACAGCAGTATGCCAAGAAGAACAGGCCCAACCTTCACATCCTGAGCAA 4042
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4043 GCTACAAGAAGAGATGAAGAGGCTGGCTGCAGAGCGGGAGGAGACTCGGAAGAAACCCAAGATGTCAATTGTAG 4116
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4117 CATCTGCCCAGCCTGGTGGTGAGCCCTTGTGCACAGTCGATGTATGAGGTAGGCAGCATGGGCCAACAGTGCTA 4190
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4191 CCCAGGAGAGACCATCAGCCACACATCATCACTCTGCAGCTCCAGGCCTCCAACCTAAGTTCCTTCCCTGTGGC 4264
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4265 AGGGTCTGGGCTCTGGCTCTGGCACATGGGGACAGCTGTGACTACACAGTACACATGCAAAGAAGCAGTTCTGG 4338
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4339 ACAAGCTGCTCTCAATGTGACTGGATATACTTAAGGATCAGTCATAAGTTAACTGCACAAGTGGAAGCTGATAG 4412
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4413 ACAGCTGTAGATCCTGCTTGTATGTATCTGCTGCGGACCGTTTTTATGAAGGTTTTCATTAATTTTAGTACACT 4486
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4487 ATATGCACTGACAAGAAGTAATACTTCGTTGATAGATGAGATGACCAGGTTTTATAGCTTTGGCTGGCCTATGA 4560
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4561 TGCCAGGTAGCCCCTTTGCTATGGTTCTTTCTGGTGGAGCCACTGAGACTTGGTCAGAAGATGCAGGTATCCTG 4634
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4635 TCCTGTAGAATTACCTGCTTTGTGTGTTTTGCATTTTCTTCTGAAAAAGTTATAACAGAAAGGAATATTTCAGG 4708
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4709 CTATTTTGGCTTAAAATAAAACAAAATTTTAGCACCAGAAATACTCTTCCGAGATTGCAGTGAAGATACTGAGT 4782
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4783 GTTAGTCCGATTGATCCTTTTTCTTATGAAGTCTTAATGTCCTAACAGCCGTCTTCTGGATACTGAAGCTTCCA 4856
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4857 CCTTCGATAAACTTAGCAACAATTTTTTACAGAGATTTTTGCACAACCAAGCCCATCTGTTCATCAATTTTTAA 4930
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4931 AGCTTTTATGATGTTTTAAAATTTGGAAAGAAACTTTTACAGTAAGAATGAAAGATGCATTTCAACAGATGAAT 5004
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5005 ATGCATAAATAGGGAACTGGCCTTCAATGTAGCCCATCACTGACCAAGAGCTGCCTGGCACATTGTACACGATA 5078
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5079 AGTAGTTATGGTGTTTTTTGATCTCAAGGATAGCTGCTCTGTGCAGCCAGGCCTGATTGCAGGTTTTTGTCTAC 5152
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5153 CTATGCTCATTGGATAGCCCCTGTAAATGGGTATTGAGTAGAGGGGTATTCAGAGCCCTATTACCTGTTCAGAG 5226
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5227 GGGCTACACTCTACATCCTCAGTGTCTCTAACCATGTACCTGAAGATACATGGGTGACATGTGCTGTTAGAAAG 5300
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5301 ATAAGATGGCAACTGTGGGCCTCCCAACAGCATCTTCCTCCTCCTTAATCATGTGTGTGACAGCAGTTAATGTT 5374
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5375 TATGTTAATCTTGGCAAAAAGAACCCTTAATTCAAGTTGGTAGACTTGGACACTTGATTCTTTTCTGCCTCCCA 5448
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5449 TTCAGTTGTGTTCAGTCTTTTGACTAACCATTGCCCTTAAAACATACTTAACATTGAAAAAGCATATGGTAATG 5522
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5523 GTGGTATCTCTGCAGCCTCACCGACCCAGGCACTGTCAACAGGTGCTGCCACACATTCCTGGTCTCCAGTGCCC 5596
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5597 TCCCTGTCTCTTACAGGTGGGTCTTATATGTACAGTCATGCTGCAAGGGTGGGGAGCCTGTGCTGATGTGCTTC 5670
Query 1471 ------------------------------------------------------------------- 1470
Sbjct 5671 TGTGTGTTGGCCAAGGCTGTAGGGTGTACCCTGATGGTCTGAACACATAAAACTGTCCAAAAGGGAA 5737
