Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12092
- Subject:
- NM_001166642.1
- Aligned Length:
- 2740
- Identities:
- 1036
- Gaps:
- 1571
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAATGAAACAATGGCTACAGATTCTCCTCGGAGACCCAGTCGTTGTACTGGCGGAGTCGTGGTCCGCCCTCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCCGTCACGGAGCAGTCCTACATGGAGAGCGTCGTGACTTTTCTGCAGGATGTTGTGCCACAGGCTTACAGTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGTCTCCCCTAACAGAAGAAAAGGAGAAGATAGTCTGGGTCAGATTTGAGAATGCAGATCTGAACGACACATCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGGAATCTAGAATTTCATGAACTGCATAGCACTGGAAATGAGCCTCCTCTGCTGGTTATGATCGGCTACAGTGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CGGAATGCAGGTCTGGGGCATCCCTATCAGCGGGGAAGCCCAGGAGCTCTTCTCTGTACGACATGGTCCAGTCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAGCAGCTAGAATCTTGCCTGCTCCACAGTTGGGTGCCCAAAAGTGTGATAACTTTGCTGAGAAAAGACCTCTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTTGGTGTTTGTAAGAGCATTGGATCTTCAGGCACGACACCACCGTACTGCTGTGTGGATCTGTATTCACTCCG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GACTGGGGAAATGGTCAAGTCCATTCAGTTTAAAACACCCATTTATGATCTTCACTGTAACAAGCGGATCCTCG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCGTAGTCTTGCAGGAGAAAATTGCTGCCTTTGATAGCTGTACTTTCACAAAAAAATTTTTTGTCACAAGTTGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TATCCTTGTCCTGGGCCAAACATGAATCCCATTGCTCTTGGGAGCCGCTGGCTTGCTTATGCAGAAAATAAGCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GATTCGCTGTCACCAGTCCCGTGGAGGAGCCTGTGGAGACAACATTCAGTCTTACACTGCCACTGTCCTTAGTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTGCTAAAACACTGAAAAGTGGCCTGACGATGGTTGGGAAAGTGGTGACTCAACTGACAGGCACACTGCCCTCA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GGGGTGACAGAAGATGACGTTGCCCTACACTGCAACTCAAGACGGAGCCCCTTGGTTCCAGGCATCATCACAGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CATAGACACTGAGACGGTTGGAGAGGGCCAGGTGCTTGTAAGTGAGGACTCGGACAGTGATGGCATTGTGGCCC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ACTTCCCTGCCCATGAGAAGCCAGTATGCTGTATGGCTTTTAATACTAGTGGAATGCTTTTAGTCACAACAGAT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ACTCTTGGCCATGACTTTCATGTCTTCCAAATCCTGACTCATCCTTGGTCATCATCACAGTGTGCTGTCCATCA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCTGTACACACTTCACAGGGGAGAGACCGAGGCCAAAGTTCAGGACATCTGTTTCAGCCATGATTGTCGTTGGG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGGTGGTCAGTACCCTCCGGGGTACGTCCCACGTTTTCCCCATCAATCCTTATGGTGGCCAGCCTTGTGTCCGC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ACACACATGTCACCACGAGTAGTCAATCGCATGAGCCGTTTCCAGAAAAGTGCTGGGCTGGAAGAGATTGAACA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGAGCTGACATCTAAGCAAGGCGGCCGCTGTAGTCCTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCTCCCCGC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TGCATGGGAAGCTGACCAGCCAAGACTCTTACAATAACTTTACAAACAACAACCCTGGCAATCCCCGGCTTTCT 1554
Query 1 ---------------ATGGTAGTGATGCCTCTTGCACAAATCAAGCAGCCAATGACATTGGGGACCATCACCAA 59
||||||||||.|||||||||.||||||||.||||||||||||.||||.||||||||.||
Sbjct 1555 CCCCTCCCCAGCTTGATGGTAGTGACGCCTCTTGCGCAAATCAAACAGCCAATGACACTGGGAACCATCACGAA 1628
Query 60 ACGAACCGGCAAAGTTAAACCTCCTCCACAAATTTCACCCAGCAAATCGATGGGCGGAGAATTTTGTGTGGCTG 133
.|||||.||||||||||||.|.||||||||||||||.||.||||||||.||||||||.||.|||||.|||||||
Sbjct 1629 GCGAACAGGCAAAGTTAAATCACCTCCACAAATTTCTCCAAGCAAATCAATGGGCGGTGAGTTTTGCGTGGCTG 1702
Query 134 CTATCTTCGGAACATCCAGGTCATGGTTTGCAAATAATGCAGGTCTGAAAAGAGAAAAAGATCAGTCCAAACAA 207
|..|.||.||.||.||||||||.|||||||||||.||.||.|||||||||.|.|||||||||||||||||||||
Sbjct 1703 CAGTGTTTGGGACTTCCAGGTCGTGGTTTGCAAACAACGCTGGTCTGAAACGGGAAAAAGATCAGTCCAAACAA 1776
Query 208 GTTGTAGTTGAGTCCCTGTACATTATCAGTTGCTATGGCACCTTAGTGGAACACATGATGGAGCCGCGACCCCT 281
|||||||||||.||.||.|||||.|||||.|||||.||.|||||||||||.||||||||.|||||.||.||..|
Sbjct 1777 GTTGTAGTTGAATCTCTTTACATCATCAGCTGCTACGGGACCTTAGTGGAGCACATGATTGAGCCCCGGCCGAT 1850
Query 282 CAGCACTGCACCCAAGATTAGTGACGACACACCACTGGAAATGATGACATCGCCTCGAGCCAGCTGGACTCTGG 355
|||.|||||.||||||||.||||||||||||||||||||.||.|||||.||.||.||.|||||||||||.||.|
Sbjct 1851 CAGTACTGCTCCCAAGATAAGTGACGACACACCACTGGAGATAATGACGTCACCCCGTGCCAGCTGGACACTTG 1924
Query 356 TTAGAACCCCTCAATGGAATGAATTGCAGCCACCGTTTAATGCAAACCACCCTCTGCTCCTCGCTGCAGATGCA 429
|||||||.|||||.|||||||||.|||||||.||.||.|||||.||.|||||||||||||||||||||||.|||
Sbjct 1925 TTAGAACGCCTCAGTGGAATGAACTGCAGCCGCCATTCAATGCGAATCACCCTCTGCTCCTCGCTGCAGAAGCA 1998
Query 430 GTACAGTATTATCAGTTCCTGCTTGCTGGC-CTGGTTCCCCCTGGAAGTCCTGGGCCCATTACTCGACATGGGT 502
||.||||||||.|||.|||||||.||.||| || .|||||||||||||||||||.|||||||||||||||||||
Sbjct 1999 GTGCAGTATTACCAGCTCCTGCTGGCCGGCTCT-CTTCCCCCTGGAAGTCCTGGCCCCATTACTCGACATGGGT 2071
Query 503 CTTACGACAGTTTAGCTTCTGACCATAGTGGACAGGAAGATGAAGAATGGCTTTCCCAGGTTGAAATTGTAACA 576
|.||.|||||.|||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 2072 CCTATGACAGCTTAGCCTCTGACCATAGTGGACAGGAAGATGAAGAATGGCTTTCCCAGGTTGAAATTGTGACA 2145
Query 577 CACACTGGACCCCATAGACGTCTGTGGATGGGTCCACAGTTCCAGTTCAAAACCATCCATCCCTCAGGCCAAAC 650
|||||.||||||||.||.||.|||||||||||.|||||.|||||.||||||||||||||..||||||||||.||
Sbjct 2146 CACACCGGACCCCACAGGCGCCTGTGGATGGGCCCACAATTCCATTTCAAAACCATCCAAACCTCAGGCCAGAC 2219
Query 651 CACAGTTATCTCATCCAGTTCATCTGTGTTGCAGTCTCATGGTCCGAGTGACACGCCACAGCCTCTTTTGGATT 724
|||.||.||.|||.|.|||||.||||||||.||.||.||.||.||.||.|||||.||||||||.||.|||||.|
Sbjct 2220 CACGGTCATATCAACTAGTTCTTCTGTGTTACAATCGCACGGACCTAGCGACACACCACAGCCGCTCTTGGACT 2293
Query 725 TTGATACAGATGATCTTGATCTCAACAGTCTCAGGATCCAGCCAGTCCGCTCTGACCCCGTCAGCATGCCAGGG 798
|||||||.||||||||.|||||.|||||.||||||||||||||.||||||||||||||.|||||||||||||||
Sbjct 2294 TTGATACGGATGATCTAGATCTTAACAGCCTCAGGATCCAGCCTGTCCGCTCTGACCCAGTCAGCATGCCAGGG 2367
Query 799 TCATCCCGTCCAGTCTCTGATCGAAGGGGAGTTTCCACAGTGATTGATGCTGCCTCAGGTACCTTTGACAGGAG 872
|||||||||.|.|||||||||||.|||||||||||||||||||..||||||||||||||||||||||||.||||
Sbjct 2368 TCATCCCGTGCTGTCTCTGATCGGAGGGGAGTTTCCACAGTGACCGATGCTGCCTCAGGTACCTTTGACCGGAG 2441
Query 873 CGTGACCCTGCTGGAGGTGTGCGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCACATGTCCTCCATGGAGCACA 946
|||||||||||||||||||||.||||||||||||||||||||||||||||||||.||||||||||||||||||.
Sbjct 2442 CGTGACCCTGCTGGAGGTGTGTGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCATATGTCCTCCATGGAGCACT 2515
Query 947 CGGAGGAGGGCCTCCGGGAGCGACTTGCCGACGCCATGGCCGAGTCACCTAGCCGGGACGTCGTGGGATCCGGA 1020
|.|||||||||||||||||.||.|||||.||.|||||||||||||||||.|||||.|||||.||||||||.|||
Sbjct 2516 CAGAGGAGGGCCTCCGGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGGGATCTGGA 2589
Query 1021 ACAGAACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCAGGCTCCACCAGCGGCAGCATACCAAG 1094
|||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||.|||||
Sbjct 2590 ACAGAACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCCGGCTCCACCAGCGGCAGCATCCCAAG 2663
Query 1095 AAACTTTGATGGCTACCGATCTCCGCTGCCCACCAATGAGAGCCAGCCCCTCAGCCTCTTCCCGACTGGCTTCC 1168
||||||.||||||||||||||||||||.||.|||||.|||||||||||.||||||||||||||.||||||||||
Sbjct 2664 AAACTTCGATGGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGGCTTCC 2737
Query 1169 CG 1170
|.
Sbjct 2738 CC 2739
