Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12092
- Subject:
- XR_001752547.2
- Aligned Length:
- 2958
- Identities:
- 621
- Gaps:
- 2291
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAACAGTGAGCCTAGAGCTGGAGACTAGCGTTAACCGGCGGGGCGGCCGGTTTTATGAATGAAGCTATGGCTAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGATTCCCCAAGAAGACCCAGTCGTTGTACTGGTGGAGTTGTGGTTCGCCCCCAGGCTGTCACAGAGCAGTCCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACATGGAAAGTGTTGTGACTTTTCTGCAGGATGTTGTGCCACAGGCTTACAGTGGAACACCTCTAACAGAAGAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAGGAGAAAATAGTCTGGGTCAGATTTGAAAATGCAGATTTAAATGATACATCAAGAAATCTGGAATTTCATGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AATACATAGTACTGGGAATGAACCGCCTTTGTTGATTATGATTGGCTACAGTGATGGAATGCAGGTCTGGAGCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCCCTATCAGTGGTGAAGCACAAGAGCTCTTCTCTGTTCGACATGGCCCAATTCGAGCGGCTAGAATCTTGCCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCTCCACAGTTTGGTGCTCAAAAATGTGATAACTTTGCTGAAAAAAGACCCCTCCTTGGTGTTTGTAAGAGCAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGGATCTTCTGGCACAAGCCCACCGTACTGTTGTGTGGATCTGTATTCACTTCGTACTGGGGAGATGGTCAAGT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCATTCAATTTAAGACACCTATTTATGATCTCCATTGCAATAAACGGATCCTTGTCGTAGTCTTGCAGGAGAAA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATTGCTGCCTTTGATAGCTGTACTTTCACGAAGAAATTCTTTGTTACAAGCTGCTATCCATGTCCAGGGCCAAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CATGAATCCTATTGCTCTTGGGAGCCGCTGGCTTGCTTATGCAGAAAACAAGTTGATTCGATGTCATCAGTCCC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GTGGTGGAGCCTGTGGAGACAACATTCAGTCTTATACTGCCACAGTCATTAGTGCTGCTAAAACATTGAAAAGT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GGCCTGACAATGGTAGGGAAAGTGGTGACTCAGCTGACAGGCACACTGCCTTCAGGTGTGACAGAAGATGATGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGCCATCCACAGTAATTCACGGCGGAGTCCTTTGGTCCCAGGCATCATCACAGTTATTGACACCGAAACCGTTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GAGAGGGCCAGGTGCTTGTGAGTGAGGATTCTGACAGTGATGGCATTGTGGCCCACTTCCCTGCCCATGAGAAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCAGTGTGCTGCATGGCTTTTAATACAAGTGGAATGCTTCTAGTCACAACAGACACCCTTGGCCATGACTTTCA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGTCTTCCAAATTCTGACTCATCCTTGGTCCTCATCACAATGTGCTGTCCACCATCTGTATACTCTTCACAGGG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GAGAAACTGAAGCCAAAGTACAGGACATCTGCTTCAGCCATGACTGTCGCTGGGTTGTGGTCAGTACTCTCCGG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GGTACTTCCCACGTTTTCCCCATCAACCCTTATGGTGGCCAGCCTTGTGTTCGTACACATATGTCACCACGAGT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGTGAATCGCATGAGCCGTTTCCAGAAAAGTGCTGGACTGGAAGAGATTGAACAAGAACTGACGTCTAAGCAAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GAGGTCGCTGTAGCCCTGTTCCAGGTCTATCAAGCAGCCCTTCTGGGTCACCCTTGCATGCTAATCAACAAATC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AATACTAAGGAACTGATTGGAAGCTTTTTGAATGTGGGAAGGGCATACCGCCTTATAGGTATCAGTGGTCTATC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AGGGAAACTGAACAGCCAAGACTCCTATAACAATTTTACCAACAACAACCCTGGCAACCCTCGGCTCTCTCCTC 1702
Query 1 -----------ATGGTAGTGATGCCTCTTGCACAAATCAAGCAGCCAATGACATTGGGGACCATCACCAAACGA 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TTCCCAGCTTGATGGTAGTGATGCCTCTTGCACAAATCAAGCAGCCAATGACATTGGGGACCATCACCAAACGA 1776
Query 64 ACCG---------------------------------------------GCAAAGTTAAACCTCCTCCACAAAT 92
|||| |||||||||||||||||||||||||
Sbjct 1777 ACCGGGCCTTATCTCTTTGGAGCGGGGTGTTTTTCCATAAAAGCCCCATGCAAAGTTAAACCTCCTCCACAAAT 1850
Query 93 TTCACCCAGCAAATCGATGGGCGGAGAATTTTGTGTGGCTGCTATCTTCGGAACATCCAGGTCATGGTTTGCAA 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TTCACCCAGCAAATCGATGGGCGGAGAATTTTGTGTGGCTGCTATCTTCGGAACATCCAGGTCATGGTTTGCAA 1924
Query 167 ATAATGCAGGTCTGAAAAGAGAAAAAGATCAGTCCAAACAAGTTGTAGTTGAGTCCCTGTACATTATCAGTTGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 ATAATGCAGGTCTGAAAAGAGAAAAAGATCAGTCCAAACAAGTTGTAGTTGAGTCCCTGTACATTATCAGTTGC 1998
Query 241 TATGGCACCTTAGTGGAACACATGATGGAGCCGCGACCCCTCAGCACTGCACCCAAGATTAGTGACGACACACC 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 TATGGCACCTTAGTGGAACACATGATGGAGCCGCGACCCCTCAGCACTGCACCCAAGATTAGTGACGACACACC 2072
Query 315 ACTGGAAATGATGACATCGCCTCGAGCCAGCTGGACTCTGGTTAGAACCCCTCAATGGAATGAATTGCAGCCAC 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 ACTGGAAATGATGACATCGCCTCGAGCCAGCTGGACTCTGGTTAGAACCCCTCAATGGAATGAATTGCAGCCAC 2146
Query 389 CGTTTAATGCAAACCACCCTCTGCTCCTCGCTGCAGATGCAGTACAGTATTATCAGTTCCTGCTTGCTGGCC-- 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 CGTTTAATGCAAACCACCCTCTGCTCCTCGCTGCAGATGCAGTACAGTATTATCAGTTCCTGCTTGCTGGCCAT 2220
Query 461 -TGGTTCCCCCTGGA-AGTCCTGGGCCCATTA----CTCGACATGGGTCTTACGACAGTTTAGCTTCTGACCAT 528
||| ||| |..||| |||| || |||| ||.|| ||.|||
Sbjct 2221 TTGG--------GGAGATCCCT--GCCC--TAGAATCTCG--------------------TAACT--TGTCCA- 2259
Query 529 AGTGGACAGGAAGATGAAGAATGGCTTTCCCAGGTTGAAATTGTAACACACACTGGACCCCATAGACGTCT--- 599
|||..|.|.|| ||||| || ||||| .||||.|.|
Sbjct 2260 ---------GAAACTCATGA-----------------AAATT----CA-------GACCC--AAGACATGTTAA 2294
Query 600 --GTGGATGGGTCCACAGTTCCAGTTCAAAACCATC--------CATCCCTCAGGCCAAACCACAGTT------ 657
|.|||.| ||||.|.| || |||.|.|.|| ||.|
Sbjct 2295 AAGAGGAGG-------------------AAACAAGCAGCTAGGACA--CCTGAAGTCA------AGATGCTAGC 2341
Query 658 ATCTCATCCAGTTCATCTGT-GTTGCAGTCTCATGGTCCGAGTGACACGCCACAGCCTCTTTTGGATTTTGATA 730
||.|||||| || |||||| ||||| .|||| |||| .|.|.|||.|
Sbjct 2342 ATGTCATCC---------GTGGTTGCA---TCATG--------TACAC----------CTTT--AAATATGAAA 2383
Query 731 CAGATGATCTTGATCTCAACAGTCTCAGGATCCAGCCAGTCCGCTCTGACCCCGTCAGCATGCCAGGGTCATCC 804
| ||||| |.|||||....||| |..|||..| .||
Sbjct 2384 C---------------CAACA------------AACCAGTATTTTCT---------ACGATGAAA----AAT-- 2415
Query 805 CGTCCAGTCTCTGATCGAAGGGGAGTTTCCACAGTGATTGATGCTGCCTCAGGTA--CCTTTGACAGGAGCGTG 876
|.|.||| ||.||..|| |.||||..|| |.|.||| .||||
Sbjct 2416 ---------TTTAATC--AGAGGTATT---ATAGTGTATG--------TAAAGTAGCACTTT------------ 2455
Query 877 ACCCTGCTGGAGGTGTGCGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCACATGTCCTCCATGGAGCACACGGA 950
Sbjct 2456 -------------------------------------------------------------------------- 2455
Query 951 GGAGGGCCTCCGGGAGCGACTTGCCGACGCCATGGCCGAGTCACCTAGCCGGGACGTCGTGGGATCCGGAACAG 1024
Sbjct 2456 -------------------------------------------------------------------------- 2455
Query 1025 AACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCAGGCTCCACCAGCGGCAGCATACCAAGAAAC 1098
Sbjct 2456 -------------------------------------------------------------------------- 2455
Query 1099 TTTGATGGCTACCGATCTCCGCTGCCCACCAATGAGAGCCAGCCCCTCAGCCTCTTCCCGACTGGCTTCCCG 1170
Sbjct 2456 ------------------------------------------------------------------------ 2455
