Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12102
- Subject:
- NM_001168321.1
- Aligned Length:
- 5123
- Identities:
- 488
- Gaps:
- 4564
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCTTTCTGCAACCCCTCTGTATGGGAACGTTCACAGCTGGATGAACAGCGAGAGGGTCCGCATGTGTGGAAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAGTGAAGACAGGAAAATTCCTGTGAATGATGGCGACGCTTCAAAAGCCAGGCTGGAGCTGAGGGAGGAGACTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCCTGAGTCACAGCGTGGTGGATACCAGTGGAGCCCATCGGATCGATGGCCTGGCAGCACTGAGCATGGACCGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACAGGCCTCATCCGGGAAGGGCTCCGGGTCCCTGGAAACATCGTTTATTCTGGCTTGTGTGGATTGGGCTCAGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAAAGGTCGGGAGGCTACCCCAAGCTCTCTCAGTGGCCTTGGGTTTTCTTCGGAAAGAAATCCAGAGATGCAAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCAAACCGAATACTCCCGAGACAGTGGAGGCTTCTGCTGTCTCTGGAAAACCCCCAAATGGCTTCAGTGCTATA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TACAAAACACCGCCTGGGATACAAAAGAGCGCTGTAGCTACAGCGGAAAGCTTGGGTTTGGATAGGCCTGCCAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGACAAACAGAGCCCTCTCAACATCAATGGTGCTAGTTACCTGCGGCTGCCCTGGGTCAACCCTTACATGGAGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGGCCACTCCAGCCATATACCCTTTCCTCGACTCGCCAAATAAGTATTCACTGAATATGTACAAGGCCTTGCTA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCTCAGCAGTCCTACGGCTTGGCCCAGCCACTGTATTCTCCTGTCTGCACCAGTGGGGAACGCTTCCTCTACCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCCACCCCCACACTATGTCAACCCTCACATCCCCTCCTCCTTGGCTTCACCCATGAGGCTCTCCACACCTTCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CCTCTGCGGCCATTCCACCTCTCGTCCACTGCTCAGACAAAAGCCTCCCATGGAAGATGGGCGTCAACCCTGGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AACCCAGTAGATTCCCACAGTTACCCCCACATCCAAAACAGTAAACAGCCCCGGGTGACCTCTGCCAAGGCAGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CAATAGTGGCCTGCCAGGGGACACAGCTCTCCTGTTGCCTCCTTCACCTCGGCCCTCAGCCCGGGTCCACCTTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CAACTCAGCCCGCTGCAGAGACCTACTCCGAGTTCCACAAGCACTATCCCAGGATCTCCACCTCTCCCTCAGTC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ACCCTGACGAAGCCATACATGACAGCCAATAGCGAGTTCTCTACATCCAGGCTGTCCAATGGCAAGTACCCCAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GGCTCTAGATGGGGGCGACTGTGCTCAATCCATGCCTGGGCACACCCGGAAGACAACGGTTCAAGACAGAAAAG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATGGGGGCTCACCACCTCTGTTGGAAAAGCAGACCGTTACCAAAGATGTCACAGACAAACCACTTGACCTGTCT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TCTAAAGTGGTGGATGCGGACGCTTCCAAAGGTGACCACATGAAAAAGATGGCTCCCACAGTCCTGGTTCACAG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCGGGCTGCAAGTGGCTTAGTGCTCTCTGGAAGTGAGATTCCGAAAGAAACACTATCTCCTCCAGGAAATGGAT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GTTCTATCTATAGATCAGAGATCATCAGCACTGCTCCCTCATCCTGGGTGGTGCCAGGGCCAAGTCCTAATGAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GAGAACAATGGCAAAAGTCTGTCACTGAAAAACAAGGCTTTGGACTGGGCAATACCGCAACAGCGGAGTTCCTC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GTGTCCCCGCATGGGTGGCACAGATGCCGTGGTCACTAATGTTTCAGGGTCCGTGTCCAGCTCAGGACGCCCAG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CCTCTGCATCACCAGCCCCCAACGCCAACGCCAATGCAGATGGCACCAAGACCAGCAGGAGCTCGGTGGATACC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ACGCCATCAGTCATCCAGCATGTGGGCCAGCCCTCATCCACGCCTGCCAAGCACGGTGGCAGCACCAGCAGCAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GGGAGCCAAAGCCAACCCAGAACCGAGCTTCAAAGCGAGTGAGAATGGCCTCCCGCCAACCTCAATATTTCTAT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CTCCAAATGAAGCATTCAGGTCCCCAGCAATTCCCTACCCTAGGAGTTACCTCCCTTACGCAGCACCAGAAGGC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATCGCTCTAAGTCCCCTCTCTTTACATGGCAAAGGACCTGTGTATCCTCACCCAGTTTTGTTACCCAATGGCAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TCTGTTTCCTGGGCACCTTGCCCCAAAGCCTGGCCTGCCTTACGGGCTGCATACGAGCAGGCCAGAATTTGTGA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CCTACCAAGATGCCCTGGGCCTGGGCATGGTCCATCCCATGTTGATCCCACACACGCCCATTGAGATCACAAAA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GAGGAGAAGCCGGAGAGACGCTCCCGCTCCCATGAGAGAGCCCGTTATGAGGACCCAACCCTCCGTAGCCGGTT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTCTGAGATGTTGGAAGCTAGCAGCACCAAACTGCATCCAGAAGTCCCCACTGACAAGAACCTGAAGCCAAACT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTAGCTGGAATCAAGGGAAGACTGGGGTCAAAAGCGACAAACTGGTCTACGTAGACCTTCTCCGAGAAGAAGCA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GACACTAAAACTGATGCAGGGGCACCCAAAGCAGGCCTTGTAGCCGAGAATGTAGGTCAGGACACCGAGGCCAC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CAAGCCCTCAGCTGACCCTGTGATCCAACAACGCCGTGAATTCATCTCCCTCAGAGAGGAGCTGGGCCGAATCA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CTGACTTCCATGAATCTTTCACTTTCAAACAGGCCTCAAGCCAGCCAGTGTTCAGCTTAGGCAAGGATAGTGGT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GCAGCAGGAACCAACAAAGAGAACCTGGGTGTGCAGGTAGCAACTCCATTCTTGGAGACAGCTCTGGGCAGTGA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GGGCCCTGCTGTGACTTTTGGTAAAACCCAAGAGGATCCCAAACCATTTTGTGTGGGCGGTGCCCCTCCAAACA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TGGATGTCACCCCCGCCTATACCAAAGAAGGAACTGATGAGGCCGAATCCAACGATGGCAAAGTTCTGAAACCC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AAGCCATCCAAGCTGGCAAAGAGAATTGCTAACTCGGCAGGTTATGTGGGCGACCGATTCAAGTGTGTCACCAC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CGAACTGTATGCAGATTCCAGTCAGCTCAGCCGAGAGCAGCGGGCATTGCAGCGTGCAATGATGCGCTTCTCAG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 AGTTGGAGATGAAAGAGAGAGAAGGTAGCCACCCAGCAACCAAAGACTCCGAGGTGTGCAAATTCAGCCCAGCC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GACTGGGAAAGGTTGAAAGGAAATCAGGAAAAGAAGCCAAAGTCAGTCACCCTGGAAGAGGCCATTGCCGACCA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GAATGACAGTGAGAGATGTGAGTATAGCACTGGAAACAAACATGATCTCTTTGAAGCCCCAGAGGACAAAGATC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TTCCTGTGGAAAAGTATTTCTTGGAGAGGCCACCTGTGAGTGAGCCACCCAGTGACCAGGGGGTGGTGGACACG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CCACACAGCCCCACCCTCCGGCTAGACAGGAAACGCAAACTGTCAGGTGACAGCACCCACACTGAGACCGCTGT 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GGAAGAGCTAGCTGAGGACCCTCTGAAAGCCAAGCGAAGACGGATCTCCAAAGGGCTCCATCCTAAAAAGCAAC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GCCACTTGCTGCACCTTAGAGAACGGTGGGAGCAGCAGGTGTCGGCAGCCGAGAGCAAACCTGGCCGGCAAAGC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 AGGAAGGAAGTGGCCCAGGCTGTTCAGCCTGAGGTCACCTCCCAGGGGACTAACATCACTGAAGAGAAGCCTGG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 CAGGAAAAAGGCAGAGGCCAAAGGCAACAGAGGCTGGTCTGAAGAGTCGCTCAAATCCTGTGACAATGAGCAAG 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GCTTGCCTGTGCTCTCAGGCTCTCCGCCCATGAAGAGCCTTTCATCCACCAATGCAAGTGGCAAAAAGCAGACT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 CAGCCAAGCTGCACGCCAGCCTCAAGGCTGCCTGCCAAACAGCAGAAAATTAAAGAAAGCCAGAAGACAGATGT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 GCTGTGCACAGGGGAAGACGAGGATTGCCAGGCTGCCTCCCCGCTGCAAAAATACACAGACAACATCGAGAAGC 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 CATCCGGGAAGAGACTGTGCAAAACCAAGCACTTGATACCTCAGGAGTCCAGGAGGAGCTTGCAGATCACAGGC 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 GACTACTATGTGGAGAACACTGACACTAAGATGACTGTGCGGAGATTCAGAAAACGACCTGAGCCCAGTTCGGA 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 CTACGATTTGTCACCACCAGCCAAGCAGGAGCCAAAGCCCTTTGACCGTCTACAACAATTGCTACCGGCCACCC 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 AGGCCACCCAGCTGCCACGCTCAAATTCTCCTCAAGAGACCACCCAGTCTCGCCCCATGCCGCCAGAAGCTCGG 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 AGACTTATTGTCAATAAGAATGCTGGCGAGACCCTCCTGCAGCGGGCTGCCCGGCTAGGCTATGAGGAAGTGGT 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 CTTATATTGCCTGGAGAACAAGGTCTGTGATGTCAATCATCGAGACAATGCTGGCTACTGTGCTCTGCATGAAG 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 CTTGCGCCAGGGGATGGCTCAACATCGTGCGCCACCTCCTTGAATATGGCGCTGATGTCAACTGCAGTGCCCAG 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 GATGGAACCAGGCCTCTGCATGATGCTGTGGAGAATGACCACTTAGAAATTGTACGATTGCTTCTTTCCTATGG 4514
Query 1 ----------------------------------------------ATGACCCACAGTGAACTTATGGAAAAGT 28
|||||||||||||||||||||||.||||
Sbjct 4515 TGCTGACCCTACTTTGGCCACATACTCAGGGAGAACCATCATGAAAATGACCCACAGTGAACTTATGGAGAAGT 4588
Query 29 TCTTAACAGATTATTTAAATGACCTCCAGGGTCGCAATGATGATGACGCCAGTGGCACTTGGGACTTCTATGGC 102
|.||||||||.||||||||||||||.||||||||||.|||.||||||.||||.|||.|||||||.|||||||||
Sbjct 4589 TTTTAACAGACTATTTAAATGACCTGCAGGGTCGCAGTGAAGATGACACCAGCGGCGCTTGGGAGTTCTATGGC 4662
Query 103 AGCTCTGTTTGTGAACCAGATGATGAAAGTGGCTATGATGTTTTAGCCAACCCCCCAGGACCAGAAGACCAGGA 176
||||||||.||||||||||||||.||||||||.||.||||||||.||.||.|||||||||||||||||||..||
Sbjct 4663 AGCTCTGTGTGTGAACCAGATGACGAAAGTGGGTACGATGTTTTGGCTAATCCCCCAGGACCAGAAGACCCAGA 4736
Query 177 TGATGATGACGATGCCTATAGCGATGTGTTTGAATTTGAATTTTCAGAGACCCCCCTCTTACCGTGTTATAACA 250
|||.||.||.|||.|||||||||||.|||||||.|||||.|||.|.||.|.|.|||||||.|||||||||||||
Sbjct 4737 TGAGGAAGAGGATACCTATAGCGATTTGTTTGAGTTTGAGTTTGCTGAAAGCTCCCTCTTGCCGTGTTATAACA 4810
Query 251 TCCAAGTATCTGTGGCTCAGGGGCCACGAAACTGGCTACTGCTTTCGGATGTCCTTAAGAAATTGAAAATGTCC 324
|||||||.|||||.|||||||||||||||||||||||.|||||.||.||.||.||.|||||.||||||||||||
Sbjct 4811 TCCAAGTGTCTGTCGCTCAGGGGCCACGAAACTGGCTTCTGCTCTCAGACGTGCTCAAGAAGTTGAAAATGTCC 4884
Query 325 TCCCGCATATTTCGCTGCAATTTTCCAAACGTGGAAATTGTCACCATTGCAGAGGCAGAATTTTATCGGCAGGT 398
|||||.|||||.||..||||||||||.||..|||||||||||||||||||||||||.||.|||||.||.|||||
Sbjct 4885 TCCCGGATATTCCGTAGCAATTTTCCCAATCTGGAAATTGTCACCATTGCAGAGGCGGAGTTTTACCGACAGGT 4958
Query 399 TTCTGCAAGTCTCTTGTTCTCTTGCTCCAAAGACCTGGAAGCCTTCAACCCTGAAAGTAAGGAGCTGTTAGATC 472
.||..||||||||||||||||.|||.||||||||||||||||||||||.||||||||.|||||||||||.||||
Sbjct 4959 CTCAACAAGTCTCTTGTTCTCCTGCCCCAAAGACCTGGAAGCCTTCAATCCTGAAAGCAAGGAGCTGTTGGATC 5032
Query 473 TGGTGGAATTCACGAACGAAATTCAGACTCTGCTGGGCTCCTCTGTAGAGTGGCTCCACCCCAGTGA-TCTGGC 545
|||||||||||||.||.||..|.|||||.|||||||||||||||||.||||||||||||||.||||| .|.|||
Sbjct 5033 TGGTGGAATTCACCAATGAGCTCCAGACACTGCTGGGCTCCTCTGTGGAGTGGCTCCACCCTAGTGACACGGGC 5106
Query 546 CTCA-GACAACTACTGG 561
|| ||.|||||||||
Sbjct 5107 --CATGAAAACTACTGG 5121
