Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12121
- Subject:
- XR_001778840.1
- Aligned Length:
- 3359
- Identities:
- 843
- Gaps:
- 2396
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGTAGGCGGTGGCTGCTGGCAGTGTGGGGCGGCCAGGACTGATCGGCCGGGTCCCCGGGGTACTACCCACGCCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGTGCAATAGCGACAACTCCATACCGGGGACTCCGGGACTGGCGGGACCCGAGAGGCGACTCTCCCAGATCCCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGTTTCCCCGCACTGAGCGACCGTGCCCAGTGTCCTGCAGAGGACGCTCGCCGGCGCGTTCTCACCAATGTCAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTTGTCACCCCTTTGCCTAGCTCCACCCCCCGGGCTGGAAAACCTGGCAGCAGACGGTCTACGGTCCCCCGGGC 296
Query 1 --------------------------------------------------------ATGCAGCCCTCAGGCTGG 18
|||||||.|||...|.||
Sbjct 297 CCAGGCCCCGCGCTGCCCCTCCTTGTCTCCTCCCGGCCACGCGCTACGAGCCCGGGATGCAGCTCTCCAACAGG 370
Query 19 GCGGCCGCCAGGGAGGCGGCGGGCCGCGACATGCTGGCCGCCGACCTCCGGTGCAGCCTCTTCGCCTCGGCCCT 92
||.||.|||||||||||.|||.||||||||.|||||||.||.||||||||.||||||||||||||||||||.||
Sbjct 371 GCAGCAGCCAGGGAGGCAGCGAGCCGCGACGTGCTGGCTGCGGACCTCCGCTGCAGCCTCTTCGCCTCGGCGCT 444
Query 93 GCAGAGCTACAAGCGCGACTCGGTGCTGCGGCCCTTCCCCGCGTCCTACGCCCGCGGCGACTGTAAGGACTTTG 166
|||||||||||||||.||||||||||||||||||||||||||.||||||||||||..|||||||||||||||.|
Sbjct 445 GCAGAGCTACAAGCGGGACTCGGTGCTGCGGCCCTTCCCCGCCTCCTACGCCCGCCACGACTGTAAGGACTTCG 518
Query 167 AAGCCCTGCTTGCAGATGCCAGCAAGTTACCTAACCTGAAAGAACTTCTCCAGTCCTCCGGAGACAACCACAAA 240
|.|||||||||||.||..|..|||.||||||.|||.||||.||||||||.|||||.|||.||||||...|||||
Sbjct 519 AGGCCCTGCTTGCGGACACTGGCAGGTTACCCAACTTGAAGGAACTTCTACAGTCTTCCAGAGACACAGACAAA 592
Query 241 CGGGCCTGGGACCTGGTGAGCTGGATTTTATCCTCAAAGGTCCTGACAATCCACAGTGCAGGGAAGGCAGAGTT 314
|.|||||||||||||||||||||||||||||||||.|||.|||||||||||||||||||...||||||||||||
Sbjct 593 CAGGCCTGGGACCTGGTGAGCTGGATTTTATCCTCCAAGATCCTGACAATCCACAGTGCCAAGAAGGCAGAGTT 666
Query 315 TGAAAAGATCCAAAAGCTGACTGGGGCTCCTCACACGCCTGTTCCTGCACCGGACTTCCTGTTTGAAATTGAGT 388
||||||||||||..|||||||.||.||.||||||||.|||||.||..|.|||||.|||||.|||||||||||||
Sbjct 667 TGAAAAGATCCAGCAGCTGACCGGCGCCCCTCACACACCTGTCCCCACCCCGGATTTCCTATTTGAAATTGAGT 740
Query 389 ACTTTGACCCAGCCAACGCCAAATTTTATGAGACCAAAGGAGAACGAGACCTAATCTATGCATTTCATGGTAGC 462
||||||||||.||||||.|||.|||||||||||||||||||||||||||||||||||||||.||.|||||||||
Sbjct 741 ACTTTGACCCGGCCAACTCCAGATTTTATGAGACCAAAGGAGAACGAGACCTAATCTATGCCTTCCATGGTAGC 814
Query 463 CGCCTAGAAAACTTCCATTCCATTATCCACAATGGCCTGCACTGCCATCTGAACAAGACATCCTTGTTCGGAGA 536
||||||||.||||||||.|||||.||.||||||||||||||||||||.|||||||||||.||..||||.|||||
Sbjct 815 CGCCTAGAGAACTTCCACTCCATCATTCACAATGGCCTGCACTGCCACCTGAACAAGACTTCTCTGTTTGGAGA 888
Query 537 GGGGACCTACCTCACCAGTGACTTAAGCCTGGCCCTCATATACAGCCCCCATGGCCATGGGTGGCAGCACAGCC 610
|||||||||||||||.||||||||.||||||||||||||.||.||.||.||||||||.||||||||.||.||||
Sbjct 889 GGGGACCTACCTCACAAGTGACTTGAGCCTGGCCCTCATTTATAGTCCTCATGGCCACGGGTGGCAACATAGCC 962
Query 611 TCCTCGGCCCCATCCTTAGCTGTGTGGCCGTGTGTGAGGTCATTGACCATCCGGACGTCAAGTGCCAAACCAAG 684
|.||.|||||.|||||.|||||.||.||.||||||||||||||.||.|||||.||.|||||||||||||.||||
Sbjct 963 TTCTTGGCCCGATCCTGAGCTGCGTAGCTGTGTGTGAGGTCATCGATCATCCAGATGTCAAGTGCCAAATCAAG 1036
Query 685 AAGAAG-------------------------------------------------------------------- 690
||||||
Sbjct 1037 AAGAAGGGACAGAGTCTCACTATGAAGTAGCTCCCTAGCTGTCCTGGAACTCACAGTGCAGACCAGGCTGGCCT 1110
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1111 TGAGCTCACAGGAAATCAGCCTGTCTCAGGGGCTGAGGGTAAGAGTGCTAGGATCAAAGGTGTATGCCACGAGG 1184
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1185 CCTGCTGGAAGTGAATGTTCTGAGAGCTTACTCTAGCGGGGCTTATTCAGAAGGCCTCCTGGGCCCAGGGGAGG 1258
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1259 TAGCCCAGGCAGTGGAGTGTGCACCTGGCAGGTATGAGCCCCTGAGGTCCCTCCTCAGCACAGCATCCGCCTGC 1332
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1333 TAAGATGCCTGTGAGCCCAGCACTCAGAAGGTGGAGACAGGAGGATCAGAAGTTCATGGTCATCCTTAGTTAGC 1406
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1407 TGTTTAATTCAGGTACATGAGACTTGTCAAAAGATAGATGGATGGATGGAAGAATGGACGAACGGATGGATGGA 1480
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1481 TGGGCAGGTGGGCAGGCAGGCAGGCTTCCATCTTTGCTCCCTGGTAAGTCCTTGTCTTGGTCCTAGGATGTGTG 1554
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1555 ATCCTGATCTGCTATTTCAGCCTTCAGCTTGCTTCCACCTTCTGCTTTCTCCATTAGATGGTTTTTATTTTCTT 1628
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1629 CTCTTATATTTTCACATTCTTTTTCCCATCTATCTTTCTCTGCCTGCCAGAGACTCCTGCCGTCTGTGCTGGGT 1702
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1703 TCACATATGAACACAGGTACATACCTCAGCCTGCTGACCTTCTGTGCCTCAGGACACATTTCTATTCCTAATTT 1776
Query 691 ----------------------------------------------------------------------GATT 694
||||
Sbjct 1777 GCTTAGTTTGTTATTGTGTTTCCCGTCCCCACCCACCACCTGACAAAGTATGCTCTACCTTCCTTTTTCAGATT 1850
Query 695 CCAAGGAGATAGATCGCAGACGAGCGAGAATCAAACATAGTGAAGGGGGAGACATCCCTCCCAAGTACTTCGTG 768
|||||||.|||||.|||||.|||||.||||||||.||.||.||.||||||||.|||||.||.||||||||.||.
Sbjct 1851 CCAAGGAAATAGACCGCAGCCGAGCAAGAATCAAGCACAGCGAGGGGGGAGAGATCCCCCCTAAGTACTTTGTA 1924
Query 769 GTCACCAATAACCAGCTGCTGCGAGTGAAGTACCTCCTGGTGTATTCACAGAAGCCACCCAAGAGGGCTCCGAG 842
|||||||||||||||||.|||||.|||||||||||.|||||||||||.|||||||..|||||||||||..||||
Sbjct 1925 GTCACCAATAACCAGCTTCTGCGGGTGAAGTACCTGCTGGTGTATTCCCAGAAGCAGCCCAAGAGGGCCTCGAG 1998
Query 843 CCAGCTCTCCTGGTTTTCCAGCCATTGGTTTACCG---TCATGATATCCCTGTATCTGCTGCTGCTGCTCATAG 913
|||||||||||||||.||||||||.||||| || |||||||.||||||||||||||||||||||||||.|
Sbjct 1999 CCAGCTCTCCTGGTTGTCCAGCCACTGGTT---CGTGATCATGATGTCCCTGTATCTGCTGCTGCTGCTCATCG 2069
Query 914 TGAGTGTCATCAACTCCTCTGCTTTCCAACACTTTTGGAATCGTGCGAAAAGA--------------------- 966
|||||||||.|||||||||||..|||||.|||||.||||||||||.|||.|||
Sbjct 2070 TGAGTGTCACCAACTCCTCTGTGTTCCACCACTTCTGGAATCGTGTGAAGAGATGATCCCAGGTGCTTGGAGTG 2143
Query 967 -------------------------------------------------------------------------- 966
Sbjct 2144 GGGCCACTCACCGTGTGCCTTATGGAAACTTGTCCTCTACCTCCTGTGTGTCACATCCGGTCAGGTCGAGTCTG 2217
Query 967 -------------------------------------------------------------------------- 966
Sbjct 2218 GGGACCATTTGCAGGGGTGCACAGGACGAGTTTTATATGCCATAAGTGTACTGATTGCCTTTGTTGATGTGCCC 2291
Query 967 -------------------------------------------------------------------------- 966
Sbjct 2292 AGACACAATCCAGTCAGTGGGGGATCCCTGGCCCCTCACTTGTCAGTTTCAGGGGTGTCCTACCCTCTGCTTCC 2365
Query 967 -------------------------------------------------------------------------- 966
Sbjct 2366 TCCTAAATAGTCTAGGGAGGTGGCTCTTCAGCCAGAGCCAAAGGAAAAAGTCCTGCTGCATTTAAAAGCAAAGT 2439
Query 967 -------------------------------------------------------------------------- 966
Sbjct 2440 GTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGCCCGGATGCTAATGCCTTTTGGAAGAC 2513
Query 967 -------------------------------------------------------------------------- 966
Sbjct 2514 AGAATGTGTGCAACGGGAACAATAAATCATTAGGCGACTGCCTTGTTTTGACTCAAGACACCCAAGAGGGACTG 2587
Query 967 -------------------------------------------------------------------------- 966
Sbjct 2588 TCGTGTTTCTCATAAAAATATCAGTGGGATCGTTTGGGAATTCCATCGGCTTTAGTCTGCCGGTGCAAAACATT 2661
Query 967 -------------------------------------------------------------------------- 966
Sbjct 2662 TTAACAGTTTTCTCAGATCAACAACCGTCTCTGCCACAGCTGTACCCCCTCCCTCCTTAACCACACAAGAGGAG 2735
Query 967 -------------------------------------------------------------------------- 966
Sbjct 2736 GAGCCACAGGCGGGATAACAAAATGCAGATTTAACAACTAGCAACTCTGTCATCTTTTTCTAAAAATGACCAAC 2809
Query 967 -------------------------------------------------------------------------- 966
Sbjct 2810 TGCTGATTACAGCTCAAACGGAACCAAATGTTTGCGTTTCTGTTTTTGTTGTCATTTATTTGACAAGTTAGCCT 2883
Query 967 -------------------------------------------------------------------------- 966
Sbjct 2884 CTATGAGCCAAATAGAGGGGGAGATGTGTGAACCTGGAGCACCGAGTGGCTACATCCACAGCCTCTTTCTGGTG 2957
Query 967 -------------------------------------------------------------------------- 966
Sbjct 2958 TTGTTATGGAGAAGGGTCCAAGCCATAGGCTCACCAGGGTCCTCATTCCCACAAAGCTGCCTTGATACCCAACA 3031
Query 967 -------------------------------------------------------------------------- 966
Sbjct 3032 CTCTAGGCTCTCAGGGGCCCGGCAGCCTTCACAGCAGAGGCCTGCCTCAGTGGGCCACGGGTCTCCATGGGCTG 3105
Query 967 -------------------------------------------------------------------------- 966
Sbjct 3106 AGCCTCCATCCGAGAAGCCTGAGGTTGAGTGGTAAGCAGAGGCCCAGCCATCCTTGCTGTGGTGTTTATCCCTC 3179
Query 967 -------------------------------------------------------------------------- 966
Sbjct 3180 CTTCCTGCCAGGTTTCAGCGGCAGAAGACCCCTGTCTGCTGGGAATGGAGTTTCCATAGAGGAGGAGAAAATAA 3253
Query 967 -------------------------------------------------------------------------- 966
Sbjct 3254 TTTTTTTCCTATAATTTGTAAAGCTTGTGAAAAAGCCACTATCGTGATTTTTTAAATCAAGTAGTGGGACATTT 3327
Query 967 ----------------------------- 966
Sbjct 3328 AAAAAACAATAAAGATATTTTCCTAAATA 3356
