Nucleotide Global Alignment

Description

• Query: ccsbBroad304_12126
• Subject: NM_001256462.1
• Aligned Length: 1576
• Identities: 1032
• Gaps: 479

Alignment

Query    1  ATGCCTGAGATCAGAGTCACGCCCTTGGGGGCCGGCCAGGACGTGGGCCGAAGCTGCATCCTGGTC--TCCATT  72
            |||||||||||||||||||||||||||||.|||.||     |.||.||.| ..|||.|.|||||||  ||||  
Sbjct    1  ATGCCTGAGATCAGAGTCACGCCCTTGGGTGCCTGC-----CCTGTGCTG-TCCTGGAACCTGGTCCTTCCA--  66

Query   73  GCGGGCAAGAATGTCATGCTGGACTGTGGAATGCACATGGGCTT----CAATGACGACC--GAC--GCTTCCCT  138
            .||||||.|           ||   ||.||..||||     |||    ||..||| |||  |||  |.||||.|
Sbjct   67  CCGGGCAGG-----------GG---GTCGAGGGCAC-----CTTCCAGCACAGAC-ACCAGGACGGGATTCCAT  120

Query  139  GACTTCTCCTACATCACCCA------GAACGGCCGCCTAACAGACTTCCTGGACTGTGTGATCATTAG--CCAC  204
            |     |||    ||.||||      |||.|       |..||     |||||      |||||  ||  |.||
Sbjct  121  G-----TCC----TCCCCCATGGCGTGAATG-------ATGAG-----CTGGA------GATCA--AGGCCTAC  165

Query  205  T-TCCACCTGGACCAC-TGC--GGGGCACTCCCCTACTTCAG--------------CGAGATGGTGGGCTACGA  260
            | |.||    |.|||| |||  ||||||  .||.|..|.|||              .|||...||||.|||| |
Sbjct  166  TATGCA----GGCCACGTGCTGGGGGCA--GCCATGTTCCAGATTAAAGTGGGCTCAGAGTCTGTGGTCTAC-A  232

Query  261  CGGCCCCATCT-ACATGACTC---ACC-CCACCCAG-----GCC---AT---------CTGCCCCATCTTGCT-  311
            |||.....|.| |||||||.|   ||| .|||..||     |||   ||         |.||||||.|.|||| 
Sbjct  233  CGGGTGATTATAACATGACCCCAGACCGACACTTAGGAGCTGCCTGGATTGACAAGTGCCGCCCCAACCTGCTC  306

Query  312  -----GGAG--------------GACTA-CCG------CAAGATC-GCCG-----TAGAC------AAGAAGG-  346
                 .|||              |||.| |||      ||||..| ||||     .||||      |||||.| 
Sbjct  307  ATCACAGAGTCCACGTACGCCACGACCATCCGTGACTCCAAGCGCTGCCGGGAGCGAGACTTCCTGAAGAAAGT  380

Query  347  --GCGAGGCC--------------------------AACT-TCTTCAC---------CTCCCAGATGATCAAAG  382
              .||||.||                          |.|| |.|||.|         |.|||||..|.|     
Sbjct  381  CCACGAGACCGTGGAGCGTGGTGGGAAGGTGCTGATACCTGTGTTCGCGCTGGGCCGCGCCCAGGAGCT-----  449

Query  383  ACTGCATCCTCCTGGAGACCTTCTGGGAGCGCATGAACCTGAAGGTGCCCATCTACTTCTCCACGGGGCTGACC  456
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  450  -CTGCATCCTCCTGGAGACCTTCTGGGAGCGCATGAACCTGAAGGTGCCCATCTACTTCTCCACGGGGCTGACC  522

Query  457  GAGAAGGCCAACCACTACTACAAGCTGTTCATCCCCTGGACCAACCAGAAGATCCGCAAGACTTTTGTGCAGAG  530
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct  523  GAGAAGGCCAACCACTACTACAAGCTGTTCATCCCCTGGACCAACCAGAAGATCCGCAAGACTTTCGTGCAGAG  596

Query  531  GAACATGTTTGAGTTCAAGCACATCAAGGCCTTCGACCGGGCTTTTGCTGACAACCCAGGACCGATGGTTGTGT  604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  597  GAACATGTTTGAGTTCAAGCACATCAAGGCCTTCGACCGGGCTTTTGCTGACAACCCAGGACCGATGGTTGTGT  670

Query  605  TTGCCACGCCAGGAATGCTGCACGCTGGGCAGTCCCTGCAGATCTTCCGGAAATGGGCCGGAAACGAAAAGAAC  678
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  671  TTGCCACGCCAGGAATGCTGCACGCTGGGCAGTCCCTGCAGATCTTCCGGAAATGGGCCGGAAACGAAAAGAAC  744

Query  679  ATGGTCATCATGCCCGGCTACTGCGTGCAGGGCACCGTCGGCCACAAGATCCTCAGCGGGCAGCGGAAGCTCGA  752
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  745  ATGGTCATCATGCCCGGCTACTGCGTGCAGGGCACCGTCGGCCACAAGATCCTCAGCGGGCAGCGGAAGCTCGA  818

Query  753  GATGGAGGGGCGGCAGGTGCTGGAGGTCAAGATGCAGGTGGAGTACATGTCATTCAGCGCACACGCGGACGCCA  826
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  819  GATGGAGGGGCGGCAGGTGCTGGAGGTCAAGATGCAGGTGGAGTACATGTCATTCAGCGCACACGCGGACGCCA  892

Query  827  AGGGCATCATGCA-------------------------------------------------------------  839
            |||||||||||||                                                             
Sbjct  893  AGGGCATCATGCAGCTGGTGGGCCAGGCAGAGCCGGAGAGCGTGCTGCTGGTGCATGGCGAGGCCAAGAAGATG  966

Query  840  --------------------------------------------------------------------------  839
                                                                                      
Sbjct  967  GAGTTCCTGAAGCAGAAGATCGAGCAGGAGCTCCGGGTCAACTGCTACATGCCGGCCAATGGCGAGACGGTGAC  1040

Query  840  --------------------------------------------------------------------------  839
                                                                                      
Sbjct 1041  GCTGCCCACAAGCCCCAGCATCCCCGTAGGCATCTCGCTGGGGCTGCTGAAGCGGGAGATGGCGCAGGGGCTGC  1114

Query  840  ----------------------------------------------------------------GCTGGTGTCC  849
                                                                            ||||||||||
Sbjct 1115  TCCCTGAGGCCAAGAAGCCTCGGCTCCTGCACGGCACCCTGATCATGAAGGACAGCAACTTCCGGCTGGTGTCC  1188

Query  850  TCAGAGCAAGCCCTCAAAGAGCTGGGTCTGGCTGAGCACCAGCTGCGCTTCACCTGCCGCGTGCACCTGCATGA  923
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189  TCAGAGCAAGCCCTCAAAGAGCTGGGTCTGGCTGAGCACCAGCTGCGCTTCACCTGCCGCGTGCACCTGCATGA  1262

Query  924  CACACGCAAGGAGCAGGAGACGGCATTGCGCGTCTACAGCCACCTCAAGAGCGTCCTGAAGGACCACTGTGTGC  997
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263  CACACGCAAGGAGCAGGAGACGGCATTGCGCGTCTACAGCCACCTCAAGAGCGTCCTGAAGGACCACTGTGTGC  1336

Query  998  AGCACCTCCCGGACGGCTCTGTGACTGTGGAGTCCGTCCTCCTCCAGGCCGCCGCCCCTTCTGAGGACCCAGGC  1071
            ||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337  AGCACCTCCCAGACGGCTCTGTGACTGTGGAGTCCGTCCTCCTCCAGGCCGCCGCCCCTTCTGAGGACCCAGGC  1410

Query 1072  ACCAAGGTGCTGCTGGTCTCCTGGACCTACCAGGACGAGGAGCTGGGGAGCTTCCTCACATCTCTGCTGAAGAA  1145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411  ACCAAGGTGCTGCTGGTCTCCTGGACCTACCAGGACGAGGAGCTGGGGAGCTTCCTCACATCTCTGCTGAAGAA  1484

Query 1146  GGGCCTCCCCCAGGCCCCCAGC  1167
            ||||||||||||||||||||||
Sbjct 1485  GGGCCTCCCCCAGGCCCCCAGC  1506