Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12139
- Subject:
- XM_011535918.3
- Aligned Length:
- 4947
- Identities:
- 2119
- Gaps:
- 2826
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAAAATGCATAAACGAATTCTTGGACACTTGTCATCTGTGTACTGTGTAACTTTTGATCGAACTGGCAGACG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GATATTTACTGGTTCTGATGACTGTCTTGTGAAAATATGGGCAACAGATGATGGGAGGTTGTTAGCTACCTTAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAGGACATGCTGCTGAAATATCAGACATGGCTGTAAACTATGAGAATACCATGATAGCAGCTGGAAGTTGTGAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAAATGATCCGAGTCTGGTGTCTTCGAACCTGTGCACCTTTGGCTGTTCTTCAGGGCCATAGTGCATCTATTAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATCACTACAGTTCTCACCATTGTGCAGTGGCTCAAAGAGATATCTATCTTCTACTGGGGCAGATGGCACTATTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTTTTTGGCTCTGGGATGCTGGAACCCTTAAAATAAACCCAAGACCTGCAAAATTTACAGAGCGCCCTCGGCCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGAGTTCAAATGATCTGTTCTTCTTTTAGTGCTGGTGGAATGTTTCTGGCGACGGGAAGCACAGATCATATTAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCGGGTTTATTTTTTTGGATCAGGTCAGCCAGAGAAAATATCAGAATTGGAGTTTCATACTGACAAAGTTGACA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GTATCCAGTTTTCCAACACTAGTAACAGGTTTGTAAGTGGCAGTCGTGATGGGACAGCACGTATTTGGCAATTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAACGAAGAGAGTGGAAGAGCATTTTGTTGGATATGGCTACTCGTCCAGCAGGCCAAAACCTTCAAGGAATAGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGATAAAATCACAAAAATGAAGGTTACTATGGTAGCTTGGGATCGACATGACAATACAGTTATAACTGCAGTTA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATAACATGACTCTGAAAGTTTGGAATTCTTACACTGGTCAACTAATTCATGTCCTGATGGGTCATGAAGATGAG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTATTTGTTCTTGAACCACACCCGTTCGATCCTAGAGTTCTCTTTTCTGCTGGTCATGATGGAAACGTGATAGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GTGGGATCTGGCAAGAGGAGTCAAAATACGATCTTATTTCAATATGATTGAAGGCCAAGGACATGGCGCAGTAT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTGACTGCAAATGCTCTCCTGATGGTCAGCATTTTGCATGCACAGACTCTCATGGACATCTTTTAATTTTTGGC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTTGGGTCCAGTAGCAAATATGACAAGATAGCAGATCAGATGTTCTTTCATAGTGATTATCGGCCACTTATTCG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGATGCCAACAATTTTGTATTAGATGAACAGACTCAGCAAGCACCTCATCTTATGCCTCCCCCTTTTTTGGTTG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATGTTGATGGTAACCCTCATCCATCAAGATATCAAAGATTAGTTCCTGGCCGTGAAAATTGCAGGGAGGAGCAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTCATCCCTCAGATGGGAGTAACTTCCTCAGGACTGAATCAAGTTTTAAGTCAGCAAGCAAACCAGGAGATCAG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CCCACTGGACAGCATGATTCAAAGACTACAACAGGAGCAAGACCTGAGACGTTCTGGTGAAGCAGTTATCAGTA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ATACCAGCCGTTTAAGTAGAGGCTCCATAAGTTCTACCTCAGAGGTTCATTCACCACCAAACGTAGGACTAAGA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CGTAGTGGACAAATTGAAGGTGTACGGCAAATGCACAGCAACGCACCAAGAAGTGAAATAGCCACAGAGCGGGA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TCTGGTAGCTTGGAGTCGAAGGGTGGTAGTACCCGAGCTATCAGCTGGTGTAGCCAGTAGGCAAGAAGAATGGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GAACTGCAAAGGGAGAAGAAGAAATAAAGACTTACAGGTCAGAAGAGAAAAGAAAACACTTAACTGTTCCAAAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GAGAATAAAATACCCACTGTCTCAAAGAATCATGCTCATGAGCATTTCCTGGATCTTGGAGAATCCAAAAAGCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ACAGACAAATCAACACAATTATCGTACAAGATCTGCATTGGAAGAGACTCCTAGACCCTCAGAAGAGATAGAAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ATGGCAGTAGTTCTTCAGATGAAGGCGAAGTAGTTGCTGTCAGTGGTGGAACATCCGAAGAAGAAGAGAGAGCA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGGCACAGTGATGGCAGTTCTAGTGACTACTCCAGTGATTACTCTGACTGGACAGCAGATGCAGGAATTAATCT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GCAGCCACCAAAGAAAGTTCCTAAGAATAAAACCAAGAAAGCAGAAAGCAGTTCAGATGAAGAAGAAGAATCTG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AAAAACAGAAGCAAAAACAGATTAAAAAGGAAAAGAAAAAAGTAAATGAAGAAAAAGATGGACCAATATCACCA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AAGAAAAAGAAGCCCAAAGAAAGAAAACAAAAGAGATTGGCTGTGGGAGAACTAACTGAAAATGGTTTGACATT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGAAGAATGGTTGCCATCAACATGGATTACAGATACCATTCCCCGAAGATGTCCATTTGTGCCACAGATGGGTG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ATGAGGTTTATTATTTCCGACAAGGACATGAAGCCTATGTCGAAATGGCCCGGAAAAATAAAATATATAGTATC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AATCCCAAAAAACAACCATGGCATAAAATGGAGCTACGGGAACAAGAACTTATGAAAATAGTTGGCATAAAGTA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TGAAGTGGGATTACCTACCCTTTGCTGCCTTAAACTTGCTTTTCTAGATCCTGATACTGGTAAACTGACTGGCG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GATCATTTACCATGAAATACCATGATATGCCTGACGTTATAGATTTCCTAGTCTTGAGACAACAATTTGATGAT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GCAAAATACAGGCGATGGAATATAGGTGACCGCTTCAGGTCTGTCATAGATGATGCCTGGTGGTTTGGAACAAT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CGAAAGCCAGGAACCTCTTCAACTTGAGTACCCTGATAGTCTGTTTCAATGCTACAATGTTTGCTGGGACAATG 2812
Query 1 --------------ATGAGTCCTTGGGATATGGAGCTTATACCTAATAATGCTGTATTTCCTGAAGAACTAGGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 GAGATACAGAAAAGATGAGTCCTTGGGATATGGAGCTTATACCTAATAATGCTGTATTTCCTGAAGAACTAGGT 2886
Query 61 ACCAGTGTTCCTTTAACTGATGGTGAGTGCAGATCACTAATCTATAAACCTCTTGATGGAGAATGGGGTACCAA 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 ACCAGTGTTCCTTTAACTGATGGTGAGTGCAGATCACTAATCTATAAACCTCTTGATGGAGAATGGGGTACCAA 2960
Query 135 TCCCAGGGATGAAGAATGTGAAAGAATTGTGGCAGGAATAAACCAGTTGATGACACTAGATATTGCCTCAGCAT 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 TCCCAGGGATGAAGAATGTGAAAGAATTGTGGCAGGAATAAACCAGTTGATGACACTAGATATTGCCTCAGCAT 3034
Query 209 TTGTGGCCCCCGTGGATCTGCAAGCCTATCCCATGTATTGCACAGTAGTGGCATATCCAACGGATCTAAGTACA 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035 TTGTGGCCCCCGTGGATCTGCAAGCCTATCCCATGTATTGCACAGTAGTGGCATATCCAACGGATCTAAGTACA 3108
Query 283 ATTAAACAAAGACTGGAAAACAGGTTTTACAGGCGGGTTTCTTCCCTAATGTGGGAAGTTCGATATATAGAGCA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 ATTAAACAAAGACTGGAAAACAGGTTTTACAGGCGGGTTTCTTCCCTAATGTGGGAAGTTCGATATATAGAGCA 3182
Query 357 TAATACACGAACATTTAATGAGCCTGGAAGCCCTATTGTGAAATCTGCTAAATTCGTGACTGATCTTCTTCTAC 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 TAATACACGAACATTTAATGAGCCTGGAAGCCCTATTGTGAAATCTGCTAAATTCGTGACTGATCTTCTTCTAC 3256
Query 431 ATTTTATAAAGGATCAGACTTGTTATAACATAATTCCACTTTATAATTCAATGAAGAAGAAAGTTTTGTCTGAT 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257 ATTTTATAAAGGATCAGACTTGTTATAACATAATTCCACTTTATAATTCAATGAAGAAGAAAGTTTTGTCTGAT 3330
Query 505 TCTGAGGATGAAGAGAAAGATGCTGATGTGCCAGGAACTTCTACTCGAAAAAGGAAGGACCATCAGCCTAGAAG 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 TCTGAGGATGAAGAGAAAGATGCTGATGTGCCAGGAACTTCTACTCGAAAAAGGAAGGACCATCAGCCTAGAAG 3404
Query 579 AAGATTACGTAATAGAGCCCAGTCTTACGATATTCAAGCATGGAAGAAACAGTGTGAAGAATTGTTAAATCTCA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405 AAGATTACGTAATAGAGCCCAGTCTTACGATATTCAAGCATGGAAGAAACAGTGTGAAGAATTGTTAAATCTCA 3478
Query 653 TATTTCAATGTGAAGATTCAGAGCCTTTCCGTCAGCCGGTAGATCTCCTTGAATATCCAGACTACAGAGACATC 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 TATTTCAATGTGAAGATTCAGAGCCTTTCCGTCAGCCGGTAGATCTCCTTGAATATCCAGACTACAGAGACATC 3552
Query 727 ATTGACACTCCAATGGATTTTGCTACCGTTAGAGAAACTTTAGAGGCTGGGAATTATGAGTCACCAATGGAGTT 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553 ATTGACACTCCAATGGATTTTGCTACCGTTAGAGAAACTTTAGAGGCTGGGAATTATGAGTCACCAATGGAGTT 3626
Query 801 ATGTAAAGATGTCAGACTTATTTTCAGTAATTCCAAAGCATATACACCAAGCAAAAGATCAAGGATTTACAGCA 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627 ATGTAAAGATGTCAGACTTATTTTCAGTAATTCCAAAGCATATACACCAAGCAAAAGATCAAGGATTTACAGCA 3700
Query 875 TGAGTTTGCGCTTGTCTGCATTCTTTGAAGAACACATTAGTTCAGTTTTATCAGATTATAAATCTGCTCTTCGT 948
|||||||||||.|||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 TGAGTTTGCGCCTGTCTGCTTTCTTTGAAGAACACATTAGTTCAGTTTTATCAGATTATAAATCTGCTCTTCGT 3774
Query 949 TTTCATAAAAGAAATACCATAACCAAAAGGAGGAAGAAAAGAAACAGAAGCAGCTCTGTTTCCAGTAGTGCTGC 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 TTTCATAAAAGAAATACCATAACCAAAAGGAGGAAGAAAAGAAACAGAAGCAGCTCTGTTTCCAGTAGTGCTGC 3848
Query 1023 ATCAAGCCCTGAAAGGAAAAAAAGGATCTTAAAACCCCAGCTAAAATCAGAAAGCTCTACCTCTGCATTCTCTA 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 ATCAAGCCCTGAAAGGAAAAAAAGGATCTTAAAACCCCAGCTAAAATCAGAAAGCTCTACCTCTGCATTCTCTA 3922
Query 1097 CACCTACACGATCAATACCGCCAAGACACAATGCTGCTCAGATAAACGGTAAAACAGAATCTAGTTCTGTGGTT 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3923 CACCTACACGATCAATACCGCCAAGACACAATGCTGCTCAGATAAACGGTAAAACAGAATCTAGTTCTGTGGTT 3996
Query 1171 CGAACCAGAAGCAACCGAGTGGTTGTAGATCCAGTTGTCACTGAGCAACCATCTACTTCTTCAGCTGCAAAGAC 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3997 CGAACCAGAAGCAACCGAGTGGTTGTAGATCCAGTTGTCACTGAGCAACCATCTACTTCTTCAGCTGCAAAGAC 4070
Query 1245 TTTTATTACAAAAGCTAATGCATCTGCAATACCAGGGAAAACAATACTAGAGAATTCTGTGAAACATTCCAAAG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4071 TTTTATTACAAAAGCTAATGCATCTGCAATACCAGGGAAAACAATACTAGAGAATTCTGTGAAACATTCCAAAG 4144
Query 1319 CTTTGAATACTCTTTCCAGTCCTGGTCAATCCAGTTTTAGTCATGGCACTAGGAATAATTCTGCAAAAGAAAAC 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4145 CTTTGAATACTCTTTCCAGTCCTGGTCAATCCAGTTTTAGTCATGGCACTAGGAATAATTCTGCAAAAGAAAAC 4218
Query 1393 ATGGAAAAGGAAAAGCCAGTCAAACGTAAAATGAAGTCATCTGTACTCCCAAAGGCGTCCACTCTTTCAAAGTC 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4219 ATGGAAAAGGAAAAGCCAGTCAAACGTAAAATGAAGTCATCTGTACTCCCAAAGGCGTCCACTCTTTCAAAGTC 4292
Query 1467 ATCAGCTGTCATTGAGCAAGGAGATTGTAAGAACAACGCTCTTGTACCAGGAACCATTCAAGTAAATGGCCATG 1540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4293 ATCAGCTGTCATTGAGCAAGGAGATTGTAAGAACAACGCTCTTGTACCAGGAACCATTCAAGTAAATGGCCATG 4366
Query 1541 GAGGACAGCCATCAAAACTTGTGAAGAGGGGACCTGGAAGGAAACCTAAAGTAGAAGTTAATACCAATAGTGGT 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4367 GAGGACAGCCATCAAAACTTGTGAAGAGGGGACCTGGAAGGAAACCTAAAGTAGAAGTTAATACCAATAGTGGT 4440
Query 1615 GAAATTATACACAAGAAAAGGGGTAGAAAGCCCAAAAAGCTACAGTATGCAAAGCCAGAAGATTTAGAGCAAAA 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4441 GAAATTATACACAAGAAAAGGGGTAGAAAGCCCAAAAAGCTACAGTATGCAAAGCCAGAAGATTTAGAGCAAAA 4514
Query 1689 TAATGTGCATCCCATCAGAGATGAAGTACTTCCTTCTTCAACATGCAATTTTCTTTCTGAAACTAATAATGTAA 1762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4515 TAATGTGCATCCCATCAGAGATGAAGTACTTCCTTCTTCAACATGCAATTTTCTTTCTGAAACTAATAATGTAA 4588
Query 1763 AGGAAGATTTGTTACAGAAAAAGAATCGTGGAGGTAGGAAGCCCAAAAGGAAGATGAAGACACAAAAATTAGAT 1836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4589 AGGAAGATTTGTTACAGAAAAAGAATCGTGGAGGTAGGAAGCCCAAAAGGAAGATGAAGACACAAAAATTAGAT 4662
Query 1837 GCAGATCTCCTAGTCCCTGCAAGTGTCAAAGTGTTAAGGAGAAGTAACCGAAAAAAGATAGATGATCCTATAGA 1910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4663 GCAGATCTCCTAGTCCCTGCAAGTGTCAAAGTGTTAAGGAGAAGTAACCGAAAAAAGATAGATGATCCTATAGA 4736
Query 1911 TGAGGAAGAAGAGTTTGAAGAACTCAAAGGCTCTGAACCCCACATGAGAACTAGAAATCAAGGTCGAAGGACAG 1984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4737 TGAGGAAGAAGAGTTTGAAGAACTCAAAGGCTCTGAACCCCACATGAGAACTAGAAATCAAGGTCGAAGGACAG 4810
Query 1985 CTTTCTATAATGAGGATGACTCTGAAGAGGAGCAAAGGCAGCTGTTGTTCGAAGACACCTCTTTAACTTTTGGA 2058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4811 CTTTCTATAATGAGGATGACTCTGAAGAGGAGCAAAGGCAGCTGTTGTTCGAAGACACCTCTTTAACTTTTGGA 4884
Query 2059 ACTTCTAGTAGAGGACGAGTCCGAAAGTTGACTGAAAAAGCAAAAGCTAATTTAATTGGTTGG 2121
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4885 ACTTCTAGTAGAGGACGAGTCCGAAAGTTGACTGAAAAAGCAAAAGCTAATTTAATTGGTTGG 4947
