Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12140
- Subject:
- NM_001372091.1
- Aligned Length:
- 4062
- Identities:
- 470
- Gaps:
- 3591
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGTGCCCGGCGAGGAGAACCAACTGGTCCCGAAAGAGATAGAAAATGCTGCTGAAGAACCTAGAGTCTTATG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TATTATACAAGATACTACTAATTCAAAGACAGTGAATGAACGGATCACTTTAAATTTACCAGCATCTACTCCAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCAGAAAGCTCTTTGAAGATGTGGCCAACAAAGTAGGCTACATAAATGGAACCTTTGACTTGGTGTGGGGAAAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGAATCAATACTGCTGATATGGCACCACTGGATCATACCAGTGACAAGTCACTTCTCGACGCTAATTTTGAGCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGGAAAGAAGAACTTTCTGCATTTGACAGATAAAGATGGTGAACAACCTCAAATACTGCTGGAGGATTCCAGTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTGGGGAAGACAGTGTTCATGACAGGTTTATAGGTCCGCTTCCAAGAGAAGGTTCTGGGGGTTCTACCAGTGAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TATGTCAGCCAAAGCTACTCCTACTCATCTATTTTGAATAAATCAGAAACTGGATATGTGGGACTAGTAAACCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGCAATGACTTGCTATTTGAATAGCCTTTTGCAAACACTTTTTATGACTCCTGAATTTAGGAATGCATTATATA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGTGGGAATTTGAAGAATCTGAAGAAGATCCAGTGACAAGTATTCCATACCAACTTCAAAGGCTTTTTGTTTTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTACAAACCAGCAAAAAGAGAGCAATTGAAACCACAGATGTTACAAGGAGCTTTGGATGGGATAGTAGTGAGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTGGCAGCAGCATGATGTACAAGAACTATGCAGAGTCATGTTTGATGCTTTGGAACAGAAATGGAAGCAAACAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AACAGGCTGATCTTATAAATGAGCTATATCAAGGCAAGCTGAAGGACTACGTGAGATGTCTGGAATGTGGTTAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GAGGGCTGGCGAATCGACACATATCTTGATATTCCATTGGTCATCCGACCTTATGGGTCCAGCCAAGCATTTGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TAGTGTGGAAGAAGCATTGCATGCATTTATTCAGCCAGAGATTCTGGATGGCCCAAATCAGTATTTTTGTGAAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GTTGTAAGAAGAAGTGTGATGCACGGAAGGGCCTTCGGTTTTTGCATTTTCCTTATCTGCTGACCTTACAGCTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAAAGATTCGATTTTGATTATACAACCATGCATAGGATTAAACTGAATGATCGAATGACATTTCCCGAGGAACT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGATATGAGTACTTTTATTGATGTTGAAGATGAGAAATCTCCTCAGACTGAAAGTTGCACTGACAGTGGAGCAG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AAAATGAAGGTAGTTGTCACAGTGATCAGATGAGCAACGATTTCTCCAATGATGATGGTGTTGATGAAGGAATC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGTCTTGAAACCAATAGTGGAACTGAAAAGATCTCAAAATCTGGACTTGAAAAGAATTCCTTGATCTATGAACT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTTCTCTGTTATGGTTCATTCTGGGAGCGCTGCTGGTGGTCATTATTATGCATGTATAAAGTCATTCAGTGATG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AGCAGTGGTACAGCTTCAATGATCAACATGTCAGCAGGATAACACAAGAGGACATTAAGAAAACACATGGTGGA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TCTTCAGGAAGCAGAGGATATTATTCTAGTGCTTTCGCAAGTTCCACAAATGCATATATGCTGATCTATAGACT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GAAGGATCCAGCCAGAAATGCAAAATTTCTAGAAGTGGATGAATACCCAGAACATATTAAAAACTTGGTGCAGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AAGAGAGAGAGTTGGAAGAACAAGAAAAGAGACAACGAGAAATTGAGCGCAATACATGCAAGATAAAATTATTC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGTTTGCATCCTACAAAACAAGTAATGATGGAAAATAAATTGGAGGTTCATAAGGATAAGACATTAAAGGAAGC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGTAGAAATGGCTTATAAGATGATGGATTTAGAAGAGGTAATACCCCTGGATTGCTGTCGCCTTGTTAAATATG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ATGAGTTTCATGATTATCTAGAACGGTCATATGAAGGAGAAGAAGATACACCAATGGGGCTTCTACTAGGTGGC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GTCAAGTCAACATATATGTTTGATCTGCTGTTGGAGACGAGAAAGCCTGATCAGGTTTTCCAATCTTATAAACC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TGGAGTGATGGTGAAAGTTCATGTTGTTGATCTAAAGGCAGAATCTGTAGCTGCTCCTATAACTGTTCGTGCTT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ACTTAAATCAGACAGTTACAGAATTCAAACAACTGATTTCAAAGGCCATCCATTTACCTGCTGAAACAATGAGA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ATAGTGCTGGAACGCTGCTACAATGATTTGCGTCTTCTCAGTGTCTCCAGTAAAACCCTGAAAGCTGAAGGATT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTTTAGAAGTAACAAGGTGTTTGTTGAAAGCTCCGAGACTTTGGATTACCAGATGGCCTTTGCAGACTCTCATT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TATGGAAACTCCTGGATCGGCATGCAAATACAATCAGATTATTTGTTTTGCTACCTGAACAATCCCCAGTATCT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TATTCCAAAAGGACAGCATACCAGAAAGCTGGAGGCGATTCTGGTAATGTGGATGATGACTGTGAAAGAGTCAA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AGGACCTGTAGGAAGCCTAAAGTCTGTGGAAGCTATTCTAGAAGAAAGCACTGAAAAACTCAAAAGCTTGTCAC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TGCAGCAACAGCAGGATGGAGATAATGGGGACAGCAGCAAAAGTACTGAGACAAGTGACTTTGAAAACATCGAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TCACCTCTCAATGAGAGGGACTCTTCAGCATCAGTGGATAATAGAGAACTTGAACAGCATATTCAGACTTCTGA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TCCAGAAAATTTTCAGTCTGAAGAACGATCAGACTCAGATGTGAATAATGACAGGAGTACAAGTTCAGTGGACA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GTGATATTCTTAGCTCCAGTCATAGCAGTGATACTTTGTGCAATGCAGACAATGCTCAGATCCCTTTGGCTAAT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GGACTTGACTCTCACAGTATCACAAGTAGTAGAAGAACGAAAGCAAATGAAGGGAAAAAAGAAACATGGGATAC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AGCAGAAGAAGACTCTGGAACTGATAGTGAATATGATGAGAGTGGCAAGAGTAGGGGAGAAATGCAGTACATGT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 ATTTCAAAGCTGAACCTTATGCTGCAGATGAAGGTTCTGGGGAAGGACATAAATGGTTGATGGTGCATGTTGAT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AAAAGAATTACTCTGGCAGCTTTCAAACAACATTTAGAGCCCTTTGTTGGAGTTTTGTCCTCTCACTTCAAGGT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CTTTCGAGTGTATGCCAGCAATCAAGAGTTTGAGAGCGTCCGGCTGAATGAGACACTTTCATCATTTTCTGATG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 ACAATAAGATTACAATTAGACTGGGGAGAGCACTTAAAAAAGGAGAATACAGAGTTAAAGTATACCAGCTTTTG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GTCAATGAACAAGAGCCATGCAAGTTTCTGCTAGATGCTGTGTTTGCTAAAGGAATGACTGTACGGCAATCAAA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AGAGGAATTAATTCCTCAGCTCAGGGAGCAATGTGGTTTAGAGCTCAGTATTGACAGGTTTCGTCTAAGGAAAA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AAACATGGAAGAATCCTGGCACTGTCTTTTTGGATTATCATATTTATGAAGAAGATATTAATATTTCCAGCAAC 3552
Query 1 ---------------------------------------ATGAAGTCCATGTCACAGCTTGCAGTTTTGTCAAG 35
|||||||||||||||||||||||||||||||||||
Sbjct 3553 TGGGAGGTTTTCCTTGAAGTTCTTGATGGGGTAGAGAAGATGAAGTCCATGTCACAGCTTGCAGTTTTGTCAAG 3626
Query 36 ACGGTGGAAGCCTTCAGAGATGAAGTTGGATCCCTTCCAGGAGGTTGTATTGGAAAGCAGTAGTGTGGACGAAT 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627 ACGGTGGAAGCCTTCAGAGATGAAGTTGGATCCCTTCCAGGAGGTTGTATTGGAAAGCAGTAGTGTGGACGAAT 3700
Query 110 TGCGAGAGAAGCTTAGTGAAATCAGTGGGATTCCTTTGGATGATATTGAATTTGCTAAGGGTAGAGGAACATTT 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 TGCGAGAGAAGCTTAGTGAAATCAGTGGGATTCCTTTGGATGATATTGAATTTGCTAAGGGTAGAGGAACATTT 3774
Query 184 CCCTGTGATATTTCTGTCCTTGATATTCATCAAGATTTAGACTGGAATCCTAAAGTTTCTACCCTGAATGTCTG 257
||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 CCCTGTGATATTTCTGTCCTTGATATTCATCAGGATTTAGACTGGAATCCTAAAGTTTCTACCCTGAATGTCTG 3848
Query 258 GCCTCTTTATATCTGTGATGATGGTGCGGTCATATTTTATAGGGATAAAACAGAAGAATTAATGGAATTGACAG 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 GCCTCTTTATATCTGTGATGATGGTGCGGTCATATTTTATAGGGATAAAACAGAAGAATTAATGGAATTGACAG 3922
Query 332 ATGAGCAAAGAAATGAACTGATGAAAAAAGAAAGCAGTCGACTCCAGAAGACTGGACATCGTGTAACATACTCA 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3923 ATGAGCAAAGAAATGAACTGATGAAAAAAGAAAGCAGTCGACTCCAGAAGACTGGACATCGTGTAACATACTCA 3996
Query 406 CCTCGTAAAGAGAAAGCACTAAAAATATATCTGGATGGAGCACCAAATAAAGATCTGACTCAAGAC 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3997 CCTCGTAAAGAGAAAGCACTAAAAATATATCTGGATGGAGCACCAAATAAAGATCTGACTCAAGAC 4062
