Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12140
Subject:
NM_001372097.1
Aligned Length:
3933
Identities:
470
Gaps:
3462

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGTGCCCGGCGAGGAGAACCAACTGGTCCCGAAAGAGATAGAAAATGCTGCTGAAGAACCTAGAGTCTTATG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TATTATACAAGATACTACTAATTCAAAGACAGTGAATGAACGGATCACTTTAAATTTACCAGCATCTACTCCAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCAGAAAGCTCTTTGAAGATGTGGCCAACAAAGTAGGCTACATAAATGGAACCTTTGACTTGGTGTGGGGAAAT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGAATCAATACTGCTGATATGGCACCACTGGATCATACCAGTGACAAGTCACTTCTCGACGCTAATTTTGAGCC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGGAAAGAAGAACTTTCTGCATTTGACAGATAAAGATGGTGAACAACCTCAAATACTGCTGGAGGATTCCAGTG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTGGGGAAGACAGTGTTCATGACAGGTTTATAGGTCCGCTTCCAAGAGAAGGTTCTGGGGGTTCTACCAGTGAT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TATGTCAGCCAAAGCTACTCCTACTCATCTATTTTGAATAAATCAGAAACTGGATATGTGGGACTAGTAAACCA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AGCAATGACTTGCTATTTGAATAGCCTTTTGCAAACACTTTTTATGACTCCTGAATTTAGGAATGCATTATATA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGTGGGAATTTGAAGAATCTGAAGAAGATCCAGTGACAAGTATTCCATACCAACTTCAAAGGCTTTTTGTTTTG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTACAAACCAGCAAAAAGAGAGCAATTGAAACCACAGATGTTACAAGGAGCTTTGGATGGGATAGTAGTGAGGC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TTGGCAGCAGCATGATGTACAAGAACTATGCAGAGTCATGTTTGATGCTTTGGAACAGAAATGGAAGCAAACAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AACAGGCTGATCTTATAAATGAGCTATATCAAGGCAAGCTGAAGGACTACGTGAGATGTCTGGAATGTGGTTAT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GAGGGCTGGCGAATCGACACATATCTTGATATTCCATTGGTCATCCGACCTTATGGGTCCAGCCAAGCATTTGC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TAGTGTGGAAGAAGCATTGCATGCATTTATTCAGCCAGAGATTCTGGATGGCCCAAATCAGTATTTTTGTGAAC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GTTGTAAGAAGAAGTGTGATGCACGGAAGGGCCTTCGGTTTTTGCATTTTCCTTATCTGCTGACCTTACAGCTG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AAAAGATTCGATTTTGATTATACAACCATGCATAGGATTAAACTGAATGATCGAATGACATTTCCCGAGGAACT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGATATGAGTACTTTTATTGATGTTGAAGATGAGAAATCTCCTCAGACTGAAAGTTGCACTGACAGTGGAGCAG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AAAATGAAGGTAGTTGTCACAGTGATCAGATGAGCAACGATTTCTCCAATGATGATGGTGTTGATGAAGGAATC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TGTCTTGAAACCAATAGTGGAACTGAAAAGATCTCAAAATCTGGACTTGAAAAGATAACACAAGAGGACATTAA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GAAAACACATGGTGGATCTTCAGGAAGCAGAGGATATTATTCTAGTGCTTTCGCAAGTTCCACAAATGCATATA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TGCTGATCTATAGACTGAAGGATCCAGCCAGAAATGCAAAATTTCTAGAAGTGGATGAATACCCAGAACATATT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AAAAACTTGGTGCAGAAAGAGAGAGAGTTGGAAGAACAAGAAAAGAGACAACGAGAAATTGAGCGCAATACATG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CAAGATAAAATTATTCTGTTTGCATCCTACAAAACAAGTAATGATGGAAAATAAATTGGAGGTTCATAAGGATA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AGACATTAAAGGAAGCAGTAGAAATGGCTTATAAGATGATGGATTTAGAAGAGGTAATACCCCTGGATTGCTGT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CGCCTTGTTAAATATGATGAGTTTCATGATTATCTAGAACGGTCATATGAAGGAGAAGAAGATACACCAATGGG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GCTTCTACTAGGTGGCGTCAAGTCAACATATATGTTTGATCTGCTGTTGGAGACGAGAAAGCCTGATCAGGTTT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TCCAATCTTATAAACCTGGAGAAGTGATGGTGAAAGTTCATGTTGTTGATCTAAAGGCAGAATCTGTAGCTGCT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CCTATAACTGTTCGTGCTTACTTAAATCAGACAGTTACAGAATTCAAACAACTGATTTCAAAGGCCATCCATTT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ACCTGCTGAAACAATGAGAATAGTGCTGGAACGCTGCTACAATGATTTGCGTCTTCTCAGTGTCTCCAGTAAAA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CCCTGAAAGCTGAAGGATTTTTTAGAAGTAACAAGGTGTTTGTTGAAAGCTCCGAGACTTTGGATTACCAGATG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GCCTTTGCAGACTCTCATTTATGGAAACTCCTGGATCGGCATGCAAATACAATCAGATTATTTGTTTTGCTACC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TGAACAATCCCCAGTATCTTATTCCAAAAGGACAGCATACCAGAAAGCTGGAGGCGATTCTGGTAATGTGGATG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  ATGACTGTGAAAGAGTCAAAGGACCTGTAGGAAGCCTAAAGTCTGTGGAAGCTATTCTAGAAGAAAGCACTGAA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AAACTCAAAAGCTTGTCACTGCAGCAACAGCAGGATGGAGATAATGGGGACAGCAGCAAAAGTACTGAGACAAG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TGACTTTGAAAACATCGAATCACCTCTCAATGAGAGGGACTCTTCAGCATCAGTGGATAATAGAGAACTTGAAC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AGCATATTCAGACTTCTGATCCAGAAAATTTTCAGTCTGAAGAACGATCAGACTCAGATGTGAATAATGACAGG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AGTACAAGTTCAGTGGACAGTGATATTCTTAGCTCCAGTCATAGCAGTGATACTTTGTGCAATGCAGACAATGC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TCAGATCCCTTTGGCTAATGGACTTGACTCTCACAGTATCACAAGTAGTAGAAGAACGAAAGCAAATGAAGGGA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AAAAAGAAACATGGGATACAGCAGAAGAAGACTCTGGAACTGATAGTGAATATGATGAGAGTGGCAAGAGTAGG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GGAGAAATGCAGTACATGTATTTCAAAGCTGAACCTTATGCTGCAGATGAAGGTTCTGGGGAAGGACATAAATG  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  GTTGATGGTGCATGTTGATAAAAGAATTACTCTGGCAGCTTTCAAACAACATTTAGAGCCCTTTGTTGGAGTTT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TGTCCTCTCACTTCAAGGTCTTTCGAGTGTATGCCAGCAATCAAGAGTTTGAGAGCGTCCGGCTGAATGAGACA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  CTTTCATCATTTTCTGATGACAATAAGATTACAATTAGACTGGGGAGAGCACTTAAAAAAGGAGAATACAGAGT  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  TAAAGTATACCAGCTTTTGGTCAATGAACAAGAGCCATGCAAGTTTCTGCTAGATGCTGTGTTTGCTAAAGGAA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  TGACTGTACGGCAATCAAAAGAGGAATTAATTCCTCAGCTCAGGGAGCAATGTGGTTTAGAGCTCAGTATTGAC  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  AGGTTTCGTCTAAGGAAAAAAACATGGAAGAATCCTGGCACTGTCTTTTTGGATTATCATATTTATGAAGAAGA  3404

Query    1  ----------------------------------------------------------ATGAAGTCCATGTCAC  16
                                                                      ||||||||||||||||
Sbjct 3405  TATTAATATTTCCAGCAACTGGGAGGTTTTCCTTGAAGTTCTTGATGGGGTAGAGAAGATGAAGTCCATGTCAC  3478

Query   17  AGCTTGCAGTTTTGTCAAGACGGTGGAAGCCTTCAGAGATGAAGTTGGATCCCTTCCAGGAGGTTGTATTGGAA  90
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479  AGCTTGCAGTTTTGTCAAGACGGTGGAAGCCTTCAGAGATGAAGTTGGATCCCTTCCAGGAGGTTGTATTGGAA  3552

Query   91  AGCAGTAGTGTGGACGAATTGCGAGAGAAGCTTAGTGAAATCAGTGGGATTCCTTTGGATGATATTGAATTTGC  164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553  AGCAGTAGTGTGGACGAATTGCGAGAGAAGCTTAGTGAAATCAGTGGGATTCCTTTGGATGATATTGAATTTGC  3626

Query  165  TAAGGGTAGAGGAACATTTCCCTGTGATATTTCTGTCCTTGATATTCATCAAGATTTAGACTGGAATCCTAAAG  238
            |||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 3627  TAAGGGTAGAGGAACATTTCCCTGTGATATTTCTGTCCTTGATATTCATCAGGATTTAGACTGGAATCCTAAAG  3700

Query  239  TTTCTACCCTGAATGTCTGGCCTCTTTATATCTGTGATGATGGTGCGGTCATATTTTATAGGGATAAAACAGAA  312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701  TTTCTACCCTGAATGTCTGGCCTCTTTATATCTGTGATGATGGTGCGGTCATATTTTATAGGGATAAAACAGAA  3774

Query  313  GAATTAATGGAATTGACAGATGAGCAAAGAAATGAACTGATGAAAAAAGAAAGCAGTCGACTCCAGAAGACTGG  386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775  GAATTAATGGAATTGACAGATGAGCAAAGAAATGAACTGATGAAAAAAGAAAGCAGTCGACTCCAGAAGACTGG  3848

Query  387  ACATCGTGTAACATACTCACCTCGTAAAGAGAAAGCACTAAAAATATATCTGGATGGAGCACCAAATAAAGATC  460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849  ACATCGTGTAACATACTCACCTCGTAAAGAGAAAGCACTAAAAATATATCTGGATGGAGCACCAAATAAAGATC  3922

Query  461  TGACTCAAGAC  471
            |||||||||||
Sbjct 3923  TGACTCAAGAC  3933

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