Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12238
Subject:
NM_001164610.1
Aligned Length:
2495
Identities:
1800
Gaps:
403

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCGTTCCCTCACCTACAACAGCCTAGTTTCCTTCTGGCTAGCCTGAAAGCTGACTCTATAAATAAGCCCTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGCACAACGTTGCCAAGATTTGGTGAAAGTCATTGAGGATTTTCCAGCCAAGGAATTGCATGCCGTCTTCCCAT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGCTGGTGGAAAGCATCTTTGGCAGCCTGGATGGTGTCCTTGTTGGTTGGAATCTCCGATGCCTACAGGGACGT  222

Query    1  ------------------------------------------------------ATGATGAAGTTGGTTTATAA  20
                                                                  ||||||||||||||||||||
Sbjct  223  GTGAACCCTGTGGAGTACAGCACAGCGATGGAATTTCTAGACCCAAGTGGTCCAATGATGAAGTTGGTTTATAA  296

Query   21  GCTTCAAGCTGAAGACTATAAGTTCGACTTTCCTGTCTCCT-ACTTGCCTGGTCCTGTGAAGGCGTCCATCCAG  93
            .||||||||||||||||||||.||.||.||||||||||||| .||| |||||.|||||||||||.|||||.||.
Sbjct  297  ACTTCAAGCTGAAGACTATAACTTTGATTTTCCTGTCTCCTGTCTT-CCTGGCCCTGTGAAGGCATCCATTCAA  369

Query   94  GAG--TGCATCCTCCCTGACAGTCCTCTGTACCACAACAAGGTCCAGTTCACCCCTACTGGGGGCCTTGGTCTG  165
            |||  ||  |||||||||||||||||||||||||||||||.||||||||..||||.||.||.||||||||.|||
Sbjct  370  GAGAATG--TCCTCCCTGACAGTCCTCTGTACCACAACAAAGTCCAGTTTCCCCCGACCGGAGGCCTTGGCCTG  441

Query  166  AACTTGGCCCTGAATCCGTTCGAGTATTACATATTCTTCTTTGCCTTGAGCCTCATCACTCAGAAGCCACTTCC  239
            |||.|||||||.|||||.||.||.||.||.||.||||.||||||.||||||||||||.||||.||||||.|..|
Sbjct  442  AACCTGGCCCTCAATCCATTTGAATACTATATGTTCTACTTTGCTTTGAGCCTCATCTCTCAAAAGCCAATGTC  515

Query  240  TGTGTCCCTCCACGTCCGTACTTCAGACTGTGCCTATTTCATCCTGGTGGACAGGTACCTGTCATGGTTCCTGC  313
            |.||.|||||||.|||||||||||.||||||||||||||||.|||||||||.||||||||.|||||||||||.|
Sbjct  516  TATGACCCTCCATGTCCGTACTTCGGACTGTGCCTATTTCACCCTGGTGGATAGGTACCTATCATGGTTCCTAC  589

Query  314  CCACCGAAGGCAGTGTGCCCCCACCACTCTCCTCCAGCCCAGGGGGGACCAGCCCCTCACCACCTCCCAGGACA  387
            ||||.||||||||.||.||.||||||||||.||||||.|||||.||..||||||||||||||.|||||||.|||
Sbjct  590  CCACTGAAGGCAGCGTACCTCCACCACTCTGCTCCAGTCCAGGAGGCTCCAGCCCCTCACCAGCTCCCAGAACA  663

Query  388  CCAGCCATACCCTTTGCTTCCTATGGCCTCCACCACACTAGCCTCCTAAAGCGACACATCTCTCATCAGACATC  461
            ||||||||.||||||||.|||||||||||   |||||||||||||.|.||||||||||||||||||||||||||
Sbjct  664  CCAGCCATGCCCTTTGCCTCCTATGGCCT---CCACACTAGCCTCTTGAAGCGACACATCTCTCATCAGACATC  734

Query  462  TGTGAATGCAGACCCCGCCTCCCACGAGATCTGGAGGTCAGAAACTCTGCTCCAGGTTTTTGTTGAAATGTGGC  535
            |||||||||||||||.||.|||||.|||||||||.|||||||||||||.||||||||||||||.||||||||||
Sbjct  735  TGTGAATGCAGACCCTGCATCCCATGAGATCTGGCGGTCAGAAACTCTCCTCCAGGTTTTTGTGGAAATGTGGC  808

Query  536  TTCATCACTATTCCTTGGAGATGTATCAAAAAATGCAGTCCCCTCATGCCAAGCTGGAGGTTCTGCACTACCGA  609
            |||||||.||.|||.||||||||||.|||||||||||||||||||||||||||                     
Sbjct  809  TTCATCATTACTCCCTGGAGATGTACCAAAAAATGCAGTCCCCTCATGCCAAG---------------------  861

Query  610  CTCAGTGTCTCCAGCGCCCTCTACAGCCCCGCCCAACCCAGCCTCCAGGCCCTCCACGCCTACCAAGAGTCGTT  683
                                                                              |||||.||
Sbjct  862  ------------------------------------------------------------------GAGTCCTT  869

Query  684  CACGCCTACTGAGGAGCATGTGTTGGTGGTGCGCCTGCTGCTGAAGCACCTGCACGCCTTTGCCAACAGCCTGA  757
            ||||||||||||.|||||.|||.|||||||.|||||||||||||||||||||||.|||||||||||||||||||
Sbjct  870  CACGCCTACTGAAGAGCACGTGCTGGTGGTACGCCTGCTGCTGAAGCACCTGCATGCCTTTGCCAACAGCCTGA  943

Query  758  AGCCAGAGCAGGCCTCACCCTCCGCCCACTCCCACGCCACCAGCCCCCTGGAGGAGTTCAAACGGGCTGCTGTC  831
            |||||||.|||||.||.||.||.||.||||||||.||||||||.||.||||||||.|||||||||||.||.||.
Sbjct  944  AGCCAGATCAGGCTTCGCCATCTGCACACTCCCATGCCACCAGTCCGCTGGAGGAATTCAAACGGGCCGCAGTG  1017

Query  832  CCGAGGTTCGTCCAGCAGAAACTCTACCTCTTCTTGCAGCATTGCTTTGGCCACTGGCCCCTGGACGCATCGTT  905
            ||..|.||.|||||||||||.||.|||.|||||.|||||||.||.||||||||||||||.|||||.|||.|.||
Sbjct 1018  CCTCGCTTTGTCCAGCAGAAGCTGTACGTCTTCCTGCAGCACTGTTTTGGCCACTGGCCTCTGGATGCAACCTT  1091

Query  906  CAGAGCTGTCCTGGAGATGTGGCTGAGCTACCTGCAGCCGTGGCGGTACGCGCCTGACAAGCAGGCTCCGGGCA  979
            ||||||||||.||||||||||||||||||||||||||||.|||.||||.||.|||||.||.|||||||.|||||
Sbjct 1092  CAGAGCTGTCTTGGAGATGTGGCTGAGCTACCTGCAGCCATGGAGGTATGCCCCTGAGAAACAGGCTCAGGGCA  1165

Query  980  GCGACTCCCAGCCCCGGTGTGTGTCGGAGAAATGGGCACCCTTTGTCCAGGAGAACCTGCTGATGTACACCAAG  1053
            ||||..|||||||.|||||||||||.|||||.|||||||||||..|||||||.|||||||||||||||||||||
Sbjct 1166  GCGATCCCCAGCCACGGTGTGTGTCAGAGAAGTGGGCACCCTTCATCCAGGAAAACCTGCTGATGTACACCAAG  1239

Query 1054  TTGTTTGTGGGCTTTCTGAACCGCGCGCTCCGCACAGACCTGGTCAGCCCCAAGCACGCGCTCATGGTGTTCCG  1127
            .||||||||.|||||||||||||.||.||.|||||||||||.||||||||||||.|.||.||||||||.|||||
Sbjct 1240  CTGTTTGTGAGCTTTCTGAACCGTGCCCTACGCACAGACCTTGTCAGCCCCAAGAATGCACTCATGGTCTTCCG  1313

Query 1128  AGTGGCCAAAGTCTTTGCCCAGCCCAACCTGGCTGAGATGATTCAGAAAGGTGAGCAGCTATTCCTGGAGCCAG  1201
            ||||||.||.||||||||||||||||||||||||||||||||.|||||||||||||||||.|||||||||||.|
Sbjct 1314  AGTGGCTAAGGTCTTTGCCCAGCCCAACCTGGCTGAGATGATCCAGAAAGGTGAGCAGCTGTTCCTGGAGCCGG  1387

Query 1202  AGCTGGTCATCCCCCACCGCCAGCACCGACTCTTCACGGCCCCCACATTCACTGGGAGCTTCCTGTCACCCTGG  1275
            ||||..||||||||||||||||.|||||.||||||||.|.|.||||         .||||||||||||||.|||
Sbjct 1388  AGCTCATCATCCCCCACCGCCAACACCGGCTCTTCACAGTCACCAC---------CAGCTTCCTGTCACCATGG  1452

Query 1276  CCACCAGCGGTCACTGATGCCTCCTTCAAGGTGAAGAGCCACGTCTACAGCCTGGAGGGCCAGGACTGCAAGTA  1349
            ||.||.|..||.||.||||||||||||||||||||||||||.|||||.|||||.||||||||.||||||||.||
Sbjct 1453  CCCCCTGTTGTGACAGATGCCTCCTTCAAGGTGAAGAGCCATGTCTATAGCCTAGAGGGCCAAGACTGCAAATA  1526

Query 1350  CACCCCGATGTTTGGGCCCGAGGCCCGCACCCTGGTCCTGCGCCTCGCTCAGCTCATCACACAGGCCAAACACA  1423
            .|||||.||||||||.||.||...|||.|||||||||.|||||||.|||||||||||||||||||||||.||.|
Sbjct 1527  TACCCCAATGTTTGGTCCTGAAATCCGAACCCTGGTCTTGCGCCTTGCTCAGCTCATCACACAGGCCAAGCAGA  1600

Query 1424  CAGCCAAGTCCATCTCCGACCAGTGTGCGGAGAGCCCGGCTGGCCACTCCTTCCTCTCATGGCTGGGCTTTAGC  1497
            |.||||||||||||||.||.||||.||.|||.|||||..||||||.|||||||||.|||||||||..||||.||
Sbjct 1601  CTGCCAAGTCCATCTCTGATCAGTATGTGGAAAGCCCAACTGGCCGCTCCTTCCTGTCATGGCTGACCTTTGGC  1674

Query 1498  TCCATGGACACCAATGGCTCCTACACAGCCAACGACCTGGACGAGATGGGGCAAGACAGTGTCCGGAAGACAGA  1571
            ..||..|||||.|||.|||.||||.|||||||.||||||||.||.||.||.||.|||||..||||.||||||||
Sbjct 1675  CTCACAGACACAAATAGCTGCTACCCAGCCAATGACCTGGATGAAATAGGTCAGGACAGCATCCGCAAGACAGA  1748

Query 1572  TGAATACCTGGAGAAGGCCCTGGAGTACCTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGG--CAGTT  1643
            .||.|||.|.||.||||||||||||||||||||||||||||||||||||||||||||.|||||  ||  |||.|
Sbjct 1749  CGAGTACTTAGAAAAGGCCCTGGAGTACCTGCGCCAGATATTCCGGCTCAGCGAAGCCCAGCT--GGCCCAGCT  1820

Query 1644  CACACTCGCCTTGGGCACCACCCAGGATGAGAATGGAAAAAAGCAACTCCCCGACTGCATCGTGGGTGAGGACG  1717
            |||.||.|||.||||.|...|.|.|||.||||||||.||..||||.|||||.||.|||||.|||||.||.||.|
Sbjct 1821  CACGCTTGCCCTGGGGAGTGCTCGGGACGAGAATGGGAAGCAGCAGCTCCCAGATTGCATTGTGGGGGAAGAAG  1894

Query 1718  GACTCATCCTTACGCCCCTGGGGCGGTACCAGATCATCAATGGGCTGCGAAGGTTTGAAATTGAGTACCAGGGG  1791
            |||||||||||||.|||.||||.||.|||||||||||.|||||.|||||||||||.||.||||||||||||||.
Sbjct 1895  GACTCATCCTTACACCCTTGGGCCGCTACCAGATCATTAATGGTCTGCGAAGGTTCGAGATTGAGTACCAGGGA  1968

Query 1792  GACCCGGAGCTGCAGCCCATCCGGAGCTATGAGATCGCCAGCTTGGTCCGCACACTCTTTAGGCTGTCGTCTGC  1865
            |||...|||||||||||||||||||||||.||.|||.||||..|||||||..|||||||..|||||||.|||||
Sbjct 1969  GACTTAGAGCTGCAGCCCATCCGGAGCTACGAAATCACCAGTCTGGTCCGTGCACTCTTCCGGCTGTCCTCTGC  2042

Query 1866  CATCAACCACAGATTTGCAGGACAGATGGCGGCTCTGTGTTCCCGGGATGACTTCCTCGGCAGCTTCTGTCGCT  1939
            ||||||||..|||||||||||.||||||||.||||||||.||||||.||||||||||.||||||||||||||||
Sbjct 2043  CATCAACCGTAGATTTGCAGGCCAGATGGCAGCTCTGTGCTCCCGGAATGACTTCCTTGGCAGCTTCTGTCGCT  2116

Query 1940  ACCACCTCACAGAACCTGGGCTGGCCAGCAGGCACCTGCTGAGCCCTGTGGGGCGGAGGCAGGTGGCCGGCCAC  2013
            ||||||||||.||.||||...||..||.|||.||.||||||||||||||.||||||||||||||         |
Sbjct 2117  ACCACCTCACTGAGCCTGCCTTGAGCAACAGACATCTGCTGAGCCCTGTAGGGCGGAGGCAGGT---------C  2181

Query 2014  ACC---------CGCGGCCCCAGGCTCAGCCTGCGCTTCCTGGGCAGTTACCGGACGCTGGTCTCGCTGCTGCT  2078
            |||         ||.|||||||||||||||||.||.||||||||||||||||||||.|||.||..|||.|||.|
Sbjct 2182  ACCAATCCTGCACGGGGCCCCAGGCTCAGCCTCCGTTTCCTGGGCAGTTACCGGACACTGCTCCTGCTCCTGAT  2255

Query 2079  GGCCTTCTTCGTGGCCTCTCTGTTCTGCGTCGGGCCCCTCCCATGCACGCTGCTGCTCACCCTGGGCTATGTCC  2152
            |||||||||.|||||.||||||||||||.|.||||||||..|.|||.|..||||.||...|||.||.||.||||
Sbjct 2256  GGCCTTCTTTGTGGCTTCTCTGTTCTGCATTGGGCCCCTGTCCTGCTCCTTGCTCCTGGTCCTAGGATACGTCC  2329

Query 2153  TCTACGCCTCTGCCATGACACTGCTGACCGAGCGGGGGAAGCTGCACCAGCCC  2205
            ||||.|||...||.|||||||||||.||.||.|||||||||||||||||||.|
Sbjct 2330  TCTATGCCATAGCTATGACACTGCTCACTGAACGGGGGAAGCTGCACCAGCTC  2382

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