Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12325
Subject:
NR_146738.1
Aligned Length:
2447
Identities:
1049
Gaps:
1378

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGGGAGGCGGGTCGTATAAGGAGGTGGGGCGAGGCCGGAACTGGCGGACTGCGGCGCACTTCCGTAGAGGTGGA  74

Query    1  -ATGGCGTGCGGCTTTCGCCGCGCTATTGCTTGCC---------------------------------------  34
             ||||||||||||||||||||||||||||||||||                                       
Sbjct   75  CATGGCGTGCGGCTTTCGCCGCGCTATTGCTTGCCAGGTATGGATCCCGGAGCGCGCAGAGGAGTCCCTGAGGA  148

Query   35  --------------------------------------------------------------------------  34
                                                                                      
Sbjct  149  GCTAGGGACCCCAAAGGCCTTTCACCGCTGCGGGCCAGTCCTCAGTCAGCTGGAGGGTGGGTCCCACGGAATCC  222

Query   35  --------------------------------------------------------------------------  34
                                                                                      
Sbjct  223  TGTTAGTTTCTACCACCTCCTCCCCCTTCTCTGGAGCTGGTGGAGCTTCAGAAGTCCTGTGGAGCGTCGGCTGG  296

Query   35  ----------------------------------AGCTTTCCAGAGTGTTGAATCTTCCACCAGAAAACTTGAT  74
                                              ||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GATCAGTTTGTCTCGGTGAAAAGTAAACTTTGAAAGCTTTCCAGAGTGTTGAATCTTCCACCAGAAAACTTGAT  370

Query   75  CACATCAATATCTGCAGTTCCAATTTCCCAAAAAGAAGAAGTAGCTGATTTTCAGCTTTCTGTGGATTCTTTAT  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CACATCAATATCTGCAGTTCCAATTTCCCAAAAAGAAGAAGTAGCTGATTTTCAGCTTTCTGTGGATTCTTTAT  444

Query  149  TGGAAAAAGACAATGACCATTCAAGACCAGATATTCAAGTTCAAGCCAAGAGACTAGCAGAGAAGCTAAGATGT  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TGGAAAAAGACAATGACCATTCAAGACCAGATATTCAAGTTCAAGCCAAGAGACTAGCAGAGAAGCTAAGATGT  518

Query  223  GATACAGTGGTGAGTGAAATCAGTACTGGTCAAAGGACTGTAAATTTCAAAATAAACAGAGAGCTCTTAACAAA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GATACAGTGGTGAGTGAAATCAGTACTGGTCAAAGGACTGTAAATTTCAAAATAAACAGAGAGCTCTTAACAAA  592

Query  297  GACAGTGCTACAACAAGTAATTGAAGATGGCTCAAAATATGGATTAAAAAGTGAACTTTTCTCTGGACTTCCCC  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GACAGTGCTACAACAAGTAATTGAAGATGGCTCAAAATATGGATTAAAAAGTGAACTTTTCTCTGGACTTCCCC  666

Query  371  AGAAGAAGATTGTGGTTGAATTCAGTTCACCTAATGTTGCCAAAAAATTTCATGTTGGACATTTGCGTTCTACC  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGAAGAAGATTGTGGTTGAATTCAGTTCACCTAATGTTGCCAAAAAATTTCATGTTGGACATTTGCGTTCTACC  740

Query  445  ATCATAGGAAATTTTATAGCAAATCTCAAAGAAGCTTTAGGACATCAAGTAATAAGAATAAATTACCTTGGCGA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ATCATAGGAAATTTTATAGCAAATCTCAAAGAAGCTTTAGGACATCAAGTAATAAGAATAAATTACCTTGGCGA  814

Query  519  TTGGGGCATGCAGTTTGGTCT-------------------------TCTGGGAACTGGC--TTCCAGCTGTTTG  565
            |||||||||||||||||||||                         .|.|.||||   |  ||||..||||..|
Sbjct  815  TTGGGGCATGCAGTTTGGTCTAGAGACAAGATCGCTATGTAGACACACCGTGAAC---CATTTCCCACTGTGGG  885

Query  566  GCTATGAGGAAAAACTGCAG-----TCCAA-----TCCTCTACAG-----------CATCTC-------TTTGA  611
            .||     |.|..||..|||     |||.|     |.||||.|.|           ||||||       ||..|
Sbjct  886  CCT-----GCACCACCCCAGGGGCTTCCTAGCTTCTGCTCTTCTGGAAGTCTTCCCCATCTCCTCCCCATTCCA  954

Query  612  AGTTTATGTACAAGTTAATAAAGAAGCAGCAGATGATAAAAGTGTAGCAAAAGCAGCACAGGAGTTCTTCCAAC  685
            .|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  955  GGTTTATGTACAAGTTAATAAAGAAGCAGCAGATGATAAAAGTGTAGCAAAAGCAGCACAGGAGTTCTTCCAAC  1028

Query  686  GATTGGAACTGGGCGATGTGCAAGCACTTTCACTGTGGCAAAAATTTCGGGACTTGAGCATTGAAGAGTACATT  759
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029  GATTGGAACTGGGCGATGTGCAAGCACTTTCACTGTGGCAAAAATTTCGGGACTTGAGCATTGAAGAGTACATT  1102

Query  760  CGGGTTTACAAGCGTCTGGGAGTATATTTTGATGAATATTCAGGAGAATCATTTTATCGTGAAAAATCTCAAGA  833
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103  CGGGTTTACAAGCGTCTGGGAGTATATTTTGATGAATATTCAGGAGAATCATTTTATCGTGAAAAATCTCAAGA  1176

Query  834  GGTCTTAAAGTTGCTGGAGAGTAAAGGACTCCTACTGAAAACAATAAAAGGAACGGCTGTAGTAGATCTCTCTG  907
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177  GGTCTTAAAGTTGCTGGAGAGTAAAGGACTCCTACTGAAAACAATAAAAGGAACGGCTGTAGTAGATCTCTCTG  1250

Query  908  GGAATGGCGACCCCTCCTCAATTTGTACTGTAATGCGAAGTGATGGGACTTCTCTCTATGCAACCAGAGATCTT  981
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251  GGAATGGCGACCCCTCCTCAATTTGTACTGTAATGCGAAGTGATGGGACTTCTCTCTATGCAACCAGAGATCTT  1324

Query  982  GCAGCTGCTATAGATCGAATGGACAAGTATAATTTTGATACAATGATATATGT----GATAAAGGACAAAAAAA  1051
            |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||
Sbjct 1325  GCAGCTGCTATAGATCGAATGGACAAGTATAATTTTGATACAATGATATATGTGACAGATAAAGGACAAAAAAA  1398

Query 1052  GCATTTTCAGCAAGTATTCCAAATGC------------------------------------------------  1077
            ||||||||||||||||||||||||||                                                
Sbjct 1399  GCATTTTCAGCAAGTATTCCAAATGCTGAAGATCATGGGATATGACTGGGCAGAAAGGTGCCAGCACGTGCCCT  1472

Query 1078  --------------------------------------------------------------------------  1077
                                                                                      
Sbjct 1473  TTGGAGTAGTACAGGGAATGAAGACTCGAAGAGGAGATGTCACTTTCCTGGAAGATGTTTTAAATGAGATTCAA  1546

Query 1078  --------------------------------------------------------------------------  1077
                                                                                      
Sbjct 1547  TTAAGGATGCTACAGAACATGGCTTCAATTAAGACAACTAAAGAACTCAAGAACCCACAAGAGACTGCAGAGAG  1620

Query 1078  --------------------------------------------------------------------------  1077
                                                                                      
Sbjct 1621  GGTCGGGCTCGCAGCACTCATTATTCAGGACTTCAAAGGTTTACTCTTATCTGACTACAAGTTCAGCTGGGATC  1694

Query 1078  --------------------------------------------------------------------------  1077
                                                                                      
Sbjct 1695  GTGTTTTCCAGAGTCGCGGGGACACAGGAGTCTTCCTACAGTACACACACGCCCGCCTCCACAGTTTGGAAGAG  1768

Query 1078  --------------------------------------------------------------------------  1077
                                                                                      
Sbjct 1769  ACTTTTGGATGTGGGTACCTGAATGACTTCAACACTGCTTGTTTACAAGAGCCACAGTCTGTTTCAATTCTTCA  1842

Query 1078  --------------------------------------------------------------------------  1077
                                                                                      
Sbjct 1843  GCATCTTCTCAGGTTCGACGAGGTGCTTTATAAATCATCTCAGGACTTTCAACCCAGGCATATCGTCAGTTACC  1916

Query 1078  --------------------------------------------------------------------------  1077
                                                                                      
Sbjct 1917  TTCTAACTTTAAGTCATCTTGCAGCTGTGGCACACAAAACACTACAAATAAAAGATAGTCCTCCTGAAGTGGCT  1990

Query 1078  --------------------------------------------------------------------------  1077
                                                                                      
Sbjct 1991  GGGGCCAGACTTCATCTTTTCAAAGCTGTCCGTTCTGTCCTAGCCAATGGAATGAAACTTCTTGGAATAACACC  2064

Query 1078  --------------------------------------------------------------------------  1077
                                                                                      
Sbjct 2065  TATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGTGTGATGTTGGCTCACTGCAACCTCCACCTCCC  2138

Query 1078  --------------------------------------------------------------------------  1077
                                                                                      
Sbjct 2139  AGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGTGCCATCACGCCAGGCTAA  2212

Query 1078  --------------------------------------------------------------------------  1077
                                                                                      
Sbjct 2213  TTTTGTATTTTTAGTAGAGACAGGGTTTCTCTATGTTGGTCAGGCTGGTCTTGCACTCCCGACCTCAGGTTATC  2286

Query 1078  --------------------------------------------------------------------------  1077
                                                                                      
Sbjct 2287  TGTCTGCCTTGGCCTCCCAAAGTGTTGGGATTAGAGGCATGAACCACCACGCCCAGCCAAAGTTAAACTATTAT  2360

Query 1078  --------------------------------------------------------------------------  1077
                                                                                      
Sbjct 2361  TCTGTGTCAGAATCTGTATTAAATGTGACTTGTCAAGTTATTCAGTCTTTATCCTTAAATAAATGAGTTATCTG  2434

Query 1078  -----  1077
                 
Sbjct 2435  AATTC  2439

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