Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12497
Subject:
NM_022820.5
Aligned Length:
1517
Identities:
1140
Gaps:
343

Alignment

Query    1  ATGGATCTCATTCCAAACTTTGCCATGGAAACATGGGTTCTTGTGGCTACCAGCCTGGTACTCCTCTATATTTA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGATCTCATTCCAAACTTTGCCATGGAAACATGGGTTCTTGTGGCTACCAGCCTGGTACTCCTCTATATTTA  74

Query   75  TGGGACCCATTCACATAAACTTTTTAAGAAGCTGGGAATTCCTGGGCCAACCCCTCTGCCTTTTCTGGGAACTA  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TGGGACCCATTCACATAAACTTTTTAAGAAGCTGGGAATTCCTGGGCCAACCCCTCTGCCTTTTCTGGGAACTA  148

Query  149  TTTTGTTCTACCTTAGGAGGTCTCTG--------------------------AATA---AGA------------  181
            ||||||||||||||||| |||||.||                          ||||   |||            
Sbjct  149  TTTTGTTCTACCTTAGG-GGTCTTTGGAATTTTGACAGAGAATGTAATGAAAAATACGGAGAAATGTGGGGGCT  221

Query  182  --------------TTCCCA-GCTGGGCGTGGTGGCTCACG---------------------------------  207
                          ..|||| |||||.|.|..|||.||.||                                 
Sbjct  222  GTATGAGGGGCAACAGCCCATGCTGGTCATCATGGATCCCGACATGATCAAAACAGTGTTAGTGAAAGAATGTT  295

Query  208  --CCTGTAATCCCA--------GCACTT---------TGGGA-----------------------GGCTGAAGC  239
              .||||..||.||        || |||         |||||                       .||||||| 
Sbjct  296  ACTCTGTCTTCACAAACCAGATGC-CTTTAGGTCCAATGGGATTTCTGAAAAGTGCCTTAAGTTTTGCTGAAG-  367

Query  240  AGGAGGA-----------------------------------TCACC----TAA-------------GGT----  257
            |.||.||                                   |||||    |||             |||    
Sbjct  368  ATGAAGAATGGAAGAGAATACGAACATTGCTATCTCCAGCTTTCACCAGTGTAAAATTCAAGGAAATGGTCCCC  441

Query  258  ------------------------------------------CAGGAGTTCGAGACCAG---------------  274
                                                      |||||....||||.|||               
Sbjct  442  ATCATTTCCCAATGTGGAGATATGTTGGTGAGAAGCCTGAGGCAGGAAGCAGAGAACAGCAAGTCCATCAACTT  515

Query  275  ---------CTTTG------CCAACATGG-----------------GTCTTTGGA----------ATTTTGACA  306
                     |||||      .||.|||||                 .|.||||||          |||.|..||
Sbjct  516  GAAAGATTTCTTTGGGGCCTACACCATGGATGTAATCACTGGCACATTATTTGGAGTGAACTTGGATTCTCTCA  589

Query  307  GAGAAT------------GTAATGAAAAATACGGAG---------AAATGTGG-------GG------------  340
             |.|||            .|..|||||||||.|.||         |||| |||       ||            
Sbjct  590  -ACAATCCACAAGATCCCTTTCTGAAAAATATGAAGAAGCTTTTAAAAT-TGGATTTTTTGGATCCCTTTTTAC  661

Query  341  ---------CACTCTTTCCATTTCTTACCCCAGTTTTTGAAGCCCTAAATATCGGTTTGTTTCCAAAAGATGTT  405
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  662  TCTTAATATCACTCTTTCCATTTCTTACCCCAGTTTTTGAAGCCCTAAATATCGGTTTGTTTCCAAAAGATGTT  735

Query  406  ACCCATTTTTTAAAAAATTCCATTGAAAGGATGAAAGAAAGTCGCCTCAAAGATAAACAAAAGCATCGAGTAGA  479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  736  ACCCATTTTTTAAAAAATTCCATTGAAAGGATGAAAGAAAGTCGCCTCAAAGATAAACAAAAGCATCGAGTAGA  809

Query  480  TTTCTTTCAACAGATGATCGACTCCCAGAATTCCAAAGAAACAAAGTCCCATAAAGCTCTGTCTGATCTGGAGC  553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  810  TTTCTTTCAACAGATGATCGACTCCCAGAATTCCAAAGAAACAAAGTCCCATAAAGCTCTGTCTGATCTGGAGC  883

Query  554  TTGTGGCCCAGTCAATTATCATCATTTTTGCTGCCTATGACACAACTAGCACCACTCTCCCCTTCATTATGTAT  627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  884  TTGTGGCCCAGTCAATTATCATCATTTTTGCTGCCTATGACACAACTAGCACCACTCTCCCCTTCATTATGTAT  957

Query  628  GAACTGGCCACTCACCCTGATGTCCAGCAGAAACTGCAGGAGGAGATTGACGCAGTTTTACCCAATAAGGCACC  701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  958  GAACTGGCCACTCACCCTGATGTCCAGCAGAAACTGCAGGAGGAGATTGACGCAGTTTTACCCAATAAGGCACC  1031

Query  702  TGTCACCTACGATGCCCTGGTACAGATGGAGTACCTTGACATGGTGGTGAATGAAACGCTCAGATTATTCCCAG  775
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032  TGTCACCTACGATGCCCTGGTACAGATGGAGTACCTTGACATGGTGGTGAATGAAACGCTCAGATTATTCCCAG  1105

Query  776  TTGTTAGTAGAGTTACGAGAGTCTGCAAGAAAGATATTGAAATCAATGGAGTGTTCATTCCCAAAGGGTTAGCA  849
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106  TTGTTAGTAGAGTTACGAGAGTCTGCAAGAAAGATATTGAAATCAATGGAGTGTTCATTCCCAAAGGGTTAGCA  1179

Query  850  GTGATGGTTCCAATCTATGCTCTTCACCATGACCCAAAGTACTGGACAGAGCCTGAGAAGTTCTGCCCTGAA--  921
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct 1180  GTGATGGTTCCAATCTATGCTCTTCACCATGACCCAAAGTACTGGACAGAGCCTGAGAAGTTCTGCCCTGAAAG  1253

Query  922  -AGGTTCAGTAAGAAGAACAAGGACAGCATAGATCTTTACAGATACATACCTTTTGGAGCTGGACCCCGAAACT  994
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254  TAGGTTCAGTAAGAAGAACAAGGACAGCATAGATCTTTACAGATACATACCTTTTGGAGCTGGACCCCGAAACT  1327

Query  995  GCATTGGCATGAGGTTTGCTCTCACAAACATAAAACTTGCTGTCATTAGAGCACTGCAGAACTTCTCCTTCAAA  1068
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328  GCATTGGCATGAGGTTTGCTCTCACAAACATAAAACTTGCTGTCATTAGAGCACTGCAGAACTTCTCCTTCAAA  1401

Query 1069  CCTTGTAAAGAGACTCAGATCCCACTGAAATTAGACAATCTACCAATTCTTCAACCAGAAAAACCTATTGTTCT  1142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402  CCTTGTAAAGAGACTCAGATCCCACTGAAATTAGACAATCTACCAATTCTTCAACCAGAAAAACCTATTGTTCT  1475

Query 1143  AAAAGTGCACTTAAGAGATGGGATTACAAGTGGACCC  1179
            |||||||||||||||||||||||||||||||||||||
Sbjct 1476  AAAAGTGCACTTAAGAGATGGGATTACAAGTGGACCC  1512

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