Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12501
- Subject:
- NM_001351693.2
- Aligned Length:
- 3994
- Identities:
- 2369
- Gaps:
- 1589
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCCTGAGGGAGCCCAAGGACTGAGCCTCTCCAAACCTAGCCCAAGCCTCGGGTGTGGCCGAAGAGGTGAAGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGTGACTGTGGCACCGTGTGTGAGACTCGGACAGGTTCAGCCAGACCCTCAAGGCTGGAGCGTGTGGCCCGGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGATCGTGGAGACAGAACGGGCCTATGTCAGGGACCTCCGCAGCATCGTGGAGGACTACCTGGGCCCTCTGCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GACGGCGGGGTCCTGGGGCTGAGCGTGGAGCAGGTGGGCACGCTGTTTGCCAACATTGAGGACATCTACGAGTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAGCAGCGAGCTCCTGGAGGACTTGGAGAACAGCAGCAGCGCCGGGGGTATTGCCGAGTGCTTCGTGCAGAGGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCGAGGATTTTGACATCTACACATTGTACTGCATGAACTACCCGAGCTCCCTGGCCCTGCTCCGGGAGCTGTCG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TTGTCTCCGCCAGCAGCCCTGTGGCTGCAGGAGCGCCAGGCCCAGCTTCGCCACTCGCTGCCCCTGCAGAGCTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCTGCTGAAACCTGTCCAGCGCATTCTCAAGTACCATCTGCTGCTGCAGGAACTAGGGAAGCACTGGGCGGAGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCCCAGGCACTGGGGGTCGCGAGATGGTGGAGGAAGCTATTGTGTCCATGACAGCGGTTGCCTGGTACATCAAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GACATGAAGCGCAAGCAGGAGCATGCAGCGCGCCTCCAGGAAGTGCAGCGGCGGCTGGGTGGCTGGACCGGACC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGAGCTCAGTGCTTTTGGGGAACTGGTGTTGGAGGGCGCGTTCCGAGGAGGCGGAGGGGGTGGCCCCCGGCTAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GAGGGGGTGAGCGGCTGCTCTTCCTGTTCTCTCGGATGCTGCTGGTGGCCAAGCGCAGGGGGCTGGAGTACACC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TACAAAGGCCACATCTTCTGCTGCAACCTGAGCGTGAGCGAGAGTCCCCGAGACCCTCTAGGGTTCAAGGTGTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGATCTGACCATTCCCAAGCACAGACACCTGCTCCAGGCCAAGAACCAAGAAGAGAAGAGGCTGTGGATTCACT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GTCTCCAGCGCCTCTTCTTTGAGAACCACCCTGCCTCCATCCCTGCCAAGGCAAAGCAAGTTCTCCTTGAAAAC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGCCTGCATTGTGCCCCCAAAAGTAAGCCTGTCCTAGAGCCCCTGACACCCCCACTTGGGTCTCCTCGACCTCG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGATGCTAGAAGTTTTACCCCTGGGCGAAGGAACACAGCTCCATCTCCTGGGCCCTCTGTGATTCGCCGAGGCC 1258
Query 1 -----------------------------------ATGTTCCCACAGAACGCTAAGCCTGGATTCAAGCACGCT 39
|||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GCAGGCAGTCTGAGCCGGTGAAGGACCCTTATGTCATGTTCCCACAGAACGCTAAGCCTGGATTCAAGCACGCT 1332
Query 40 GGCAGCGAAGGGGAACTCTACCCTCCAGAATCTCAGCCACCAGTTTCAGGCTCTGCACCCCCTGAGGACCTGGA 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GGCAGCGAAGGGGAACTCTACCCTCCAGAATCTCAGCCACCAGTTTCAGGCTCTGCACCCCCTGAGGACCTGGA 1406
Query 114 GGATGCTGGACCCCCAACACTGGACCCCTCTGGGACCTCAATCACTGAAGAAATCCTGGAACTGCTGAATCAGC 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GGATGCTGGACCCCCAACACTGGACCCCTCTGGGACCTCAATCACTGAAGAAATCCTGGAACTGCTGAATCAGC 1480
Query 188 GAGGCCTTCGAGATCCAGGGCCGTCCACCCATGACATTCCCAAGTTCCCCGGAGACTCCCAGGTGCCTGGCGAC 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GAGGCCTTCGAGATCCAGGGCCGTCCACCCATGACATTCCCAAGTTCCCCGGAGACTCCCAGGTGCCTGGCGAC 1554
Query 262 AGCGAAACCCTCACATTCCAAGCCCTGCCCAGCCGGGACTCTTCAGAAGAGGAGGAGGAGGAAGAGGAAGGGCT 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AGCGAAACCCTCACATTCCAAGCCCTGCCCAGCCGGGACTCTTCAGAAGAGGAGGAGGAGGAAGAGGAAGGGCT 1628
Query 336 GGAGATGGATGAACGGGGGCCTTCCCCACTCCACGTCCTGGAAGGGCTCGAAAGTTCCATTGCAGCTGAAATGC 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GGAGATGGATGAACGGGGGCCTTCCCCACTCCACGTCCTGGAAGGGCTCGAAAGTTCCATTGCAGCTGAAATGC 1702
Query 410 CCAGCATTCCCTGCCTTACCAAAATTCCTGACGTGCCCAACCTTCCTGAAATTCCCAGCCACTGTGAAATTCCC 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 1703 CCAGCATTCCCTGCCTTACCAAAATTCCTGACGTGCCCAACCTTCCTGAAATTCCCAGCCGCTGTGAAATTCCC 1776
Query 484 GAAGGTTCTCGCCTTCCTAGTCTCTCTGACATTTCCGATGTTTTTGAGATGCCCTGCCTTCCAGCCATACCTAG 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GAAGGTTCTCGCCTTCCTAGTCTCTCTGACATTTCCGATGTTTTTGAGATGCCCTGCCTTCCAGCCATACCTAG 1850
Query 558 TGTCCCCAACACCCCCAGTCTGTCTAGCACTCCCACCCTCTCCTGTGACTCCTGGCTCCAAGGGCCTCTGCAGG 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TGTCCCCAACACCCCCAGTCTGTCTAGCACTCCCACCCTCTCCTGTGACTCCTGGCTCCAAGGGCCTCTGCAGG 1924
Query 632 AACCAGCTGAGGCTCCAGCCACCAGGAGAGAACTGTTTTCTGGGAGCAATCCTGGGAAACTGGGAGAGCCGCCT 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 AACCAGCTGAGGCTCCAGCCACCAGGAGAGAACTGTTTTCTGGGAGCAATCCTGGGAAACTGGGAGAGCCGCCT 1998
Query 706 TCAGGAGGCAAGGCAGGGCCAGAGGAGGATGAAGAAGGGGTATCATTCACAGACTTCCAGCCCCAGGATGTCAC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 TCAGGAGGCAAGGCAGGGCCAGAGGAGGATGAAGAAGGGGTATCATTCACAGACTTCCAGCCCCAGGATGTCAC 2072
Query 780 CCAACATCAGGGATTCCCAGATGAGCTGGCATTCCGCTCTTGCTCAGAAATCCGGAGCGCCTGGCAGGCATTGG 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 CCAACATCAGGGATTCCCAGATGAGCTGGCATTCCGCTCTTGCTCAGAAATCCGGAGCGCCTGGCAGGCATTGG 2146
Query 854 AACAGGGACAGCTGGCCCGGCCAGGCTTCCCAGAGCCACTGCTGATCCTGGAGGATTCGGATCTGGGTGGAGAC 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 AACAGGGACAGCTGGCCCGGCCAGGCTTCCCAGAGCCACTGCTGATCCTGGAGGATTCGGATCTGGGTGGAGAC 2220
Query 928 AGCGGGAGCGGGAAGGCAGGAGCCCCGAGTTCAGAAAGGACGGCGTCCCGAGTGCGAGAGCTGGCCCGGCTTTA 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 AGCGGGAGCGGGAAGGCAGGAGCCCCGAGTTCAGAAAGGACGGCGTCCCGAGTGCGAGAGCTGGCCCGGCTTTA 2294
Query 1002 CAGCGAGCGGATCCAGCAGATGCAGCGGGCGGAGACTCGGGCATCAGCCAATGCCCCGCGCCGCCGGCCTCGGG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 CAGCGAGCGGATCCAGCAGATGCAGCGGGCGGAGACTCGGGCATCAGCCAATGCCCCGCGCCGCCGGCCTCGGG 2368
Query 1076 TTCTGGCCCAACCCCAGCCATCCCCCTGTCTGCCCCAGGAGCAGGCAGAGCCAGGGCTCCTGCCTGCCTTTGGA 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 TTCTGGCCCAACCCCAGCCATCCCCCTGTCTGCCCCAGGAGCAGGCAGAGCCAGGGCTCCTGCCTGCCTTTGGA 2442
Query 1150 CACGTGCTGGTATGTGAGCTGGCCTTCCCACTGACATGTGCCCAGGAGTCTGTCCCCCTGGGTCCTGCTGTCTG 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 CACGTGCTGGTATGTGAGCTGGCCTTCCCACTGACATGTGCCCAGGAGTCTGTCCCCCTGGGTCCTGCTGTCTG 2516
Query 1224 GGTTCAAGCTGCCATACCTTTGTCAAAGCAGGGAGGCAGCCCGGATGGCCAGGGTCTACATGTTTCCAATTTGC 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 GGTTCAAGCTGCCATACCTTTGTCAAAGCAGGGAGGCAGCCCGGATGGCCAGGGTCTACATGTTTCCAATTTGC 2590
Query 1298 CTAAGCAAGACCTTCCGGGCATCCACGTTTCAGCTGCTACCCTTTTGCCTGAGCAAGGAGGTTCCCGGCATGTC 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 CTAAGCAAGACCTTCCGGGCATCCACGTTTCAGCTGCTACCCTTTTGCCTGAGCAAGGAGGTTCCCGGCATGTC 2664
Query 1372 CAGGCTCCAGCCGCCACACCTTTGCCCAAGCAAGAAGGCCCCCTGCACCTCCAGGTGCCGGCTCTTACAACTTT 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 CAGGCTCCAGCCGCCACACCTTTGCCCAAGCAAGAAGGCCCCCTGCACCTCCAGGTGCCGGCTCTTACAACTTT 2738
Query 1446 CTCTGATCAAGGCCACCCAGAAATCCAAGTTCCAGCCACCACTCCTTTGCCTGAGCATAAAAGTCACATGGTTA 1519
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct 2739 CTCTGATCAAGGCCACCCAGAAATCCAAGTTCCAGCCACCACTCCTTTGCCTGAGCATAGAAGTCACATGGTTA 2812
Query 1520 TACCAGCTCCATCCACCGCCTTTTGTCCTGAGCAGGGACACTGTGCGGACATCCACGTTCCCACCACTCCAGCT 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 TACCAGCTCCATCCACCGCCTTTTGTCCTGAGCAGGGACACTGTGCGGACATCCACGTTCCCACCACTCCAGCT 2886
Query 1594 TTGCCCAAGGAGATTTGTTCTGATTTCACAGTTTCAGTCACCACCCCTGTGCCCAAGCAAGAAGGTCACCTAGA 1667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 TTGCCCAAGGAGATTTGTTCTGATTTCACAGTTTCAGTCACCACCCCTGTGCCCAAGCAAGAAGGTCACCTAGA 2960
Query 1668 CAGCGAGAGCCCAACCAATATCCCACTGACAAAGCAAGGAGGTTCCAGGGATGTTCAGGGCCCAGACCCTGTCT 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 CAGCGAGAGCCCAACCAATATCCCACTGACAAAGCAAGGAGGTTCCAGGGATGTTCAGGGCCCAGACCCTGTCT 3034
Query 1742 GCAGTCAACCCATCCAGCCTTTGTCTTGGCATGGAAGCAGCCTGGATCCCCAGGGCCCAGGCGACACCCTACCA 1815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035 GCAGTCAACCCATCCAGCCTTTGTCTTGGCATGGAAGCAGCCTGGATCCCCAGGGCCCAGGCGACACCCTACCA 3108
Query 1816 CCCTTGCCATGTCACCTCCCAGACCTTCAGATTCCAGGTACCTCACCTTTGCCTGCACATGGAAGCCACCTGGA 1889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 CCCTTGCCATGTCACCTCCCAGACCTTCAGATTCCAGGTACCTCACCTTTGCCTGCACATGGAAGCCACCTGGA 3182
Query 1890 CCATCGGATCCCAGCCAACGCCCCACTGTCTTTGTCCCAGGAGCTCCCAGACACTCAGGTTCCAGCTACCACAC 1963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 CCATCGGATCCCAGCCAACGCCCCACTGTCTTTGTCCCAGGAGCTCCCAGACACTCAGGTTCCAGCTACCACAC 3256
Query 1964 CTTTGCCCCTGCCACAAGTCCTCACAGACATCTGGGTCCAAGCCCTCCCAACTTCACCCAAGCAGGGAAGCCTC 2037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257 CTTTGCCCCTGCCACAAGTCCTCACAGACATCTGGGTCCAAGCCCTCCCAACTTCACCCAAGCAGGGAAGCCTC 3330
Query 2038 CCAGACATCCAGGGTCCAGCGGCTGCACCTCCACTTCCGGAGCCAAGCCTTACAGATACACAGGTCCAAAAACT 2111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 CCAGACATCCAGGGTCCAGCGGCTGCACCTCCACTTCCGGAGCCAAGCCTTACAGATACACAGGTCCAAAAACT 3404
Query 2112 CACACCTTCGTTGGAGCAGAAGAGCCTCATAGATGCCCATGTTCCAGCTGCCACACCTTTACCTGAGAGAGGAG 2185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405 CACACCTTCGTTGGAGCAGAAGAGCCTCATAGATGCCCATGTTCCAGCTGCCACACCTTTACCTGAGAGAGGAG 3478
Query 2186 GCTCTCTAGACATTCAGGGCCTCTCACCCACCCCAGTTCAGACCACCATGGTTTTGTCCAAACCAGGAGGCTCC 2259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 GCTCTCTAGACATTCAGGGCCTCTCACCCACCCCAGTTCAGACCACCATGGTTTTGTCCAAACCAGGAGGCTCC 3552
Query 2260 TTAGCCTCTCACGTTGCCAGGTTGGAGTCT-TCAGACTTGAC---GCCAC------CTCATAGTCCCCCACCTT 2323
||||||||||||||||||| |||.||| |..|.|||.|| ||| | |||.|..|.||| ||||
Sbjct 3553 TTAGCCTCTCACGTTGCCA----GGAATCTATGGGCCTTCACAGGGCC-CAGGGGGCTCCTGATGCCC--CCTT 3619
Query 2324 CCAGCCGTCAGCTCCTGGGCCCCAATGCAGCTGCCCTCTCCAGATACCTGGCAGCCTCATATATCAGCCAAAGC 2397
|||...||.|| ||.||.| |||..|||.|||| ||..|..|| ||.|||||||.|
Sbjct 3620 CCACATGTGAG--CCAGGAC----ATGAGGCTTCCCT-----GAAGCAAGG---------ATTTCAGCCAGA-- 3671
Query 2398 CTGGCTCGGCGGCAGGGGCCTGGGGGAGGGGCCCCCGCAGCCTCCCGGGGCT---CCTGGTCCTCTGCTCCCAC 2468
|| ||..||.|.|.|.|..|| ||||| |.
Sbjct 3672 -TG-------------------------------CCATAGACCCTCAGAACTTGACCTGG------------AA 3701
Query 2469 GTCACGGGCATCTTCGCCGCCCCCCCAGCCCCAGCCACCACCTCCCGCAGCCAGGCGGCTCAGCTATGCCACGA 2542
|| ||||.|||
Sbjct 3702 GT----------------------------CCAGACAC------------------------------------ 3711
Query 2543 CGGTTAACATCCACGTGGGCGGGGGTGGGCGGCTGCGGCCAGCCAAGGCCCAGGTCCGGTTGAACCACCCTGCT 2616
Sbjct 3712 -------------------------------------------------------------------------- 3711
Query 2617 CTCTTGGCCTCCACACAGGAATCTATGGGCCTTCACAGGGCCCAGGGGGCTCCTGATGCCCCCTTCCACATG 2688
Sbjct 3712 ------------------------------------------------------------------------ 3711
