Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12575
Subject:
NM_001324387.2
Aligned Length:
1271
Identities:
894
Gaps:
361

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCTTAGTTCCTTTCCAGTGGTTTTGCTGGAAACCATGTCTCATTATACAGATGAACCCAGATTTACCATAGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCAGATAGATCTGCTTCAGCGACTTCGGCGTACTGGAATGACTAAACATGAAATTCTCCATGCCTTGGAAACTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TGGACCGTCTTGATCAAGAGCATAGTGACAAGTTTGGAAGAAGGTCCAGCTATGGAGGAAGTTCATATGGGAAT  222

Query    1  ------------------------------------------------------------------ATGTCCCC  8
                                                                              ||||||||
Sbjct  223  AGTACTAACAATGTCCCAGCATCTTCCTCTACAGCTACAGCTTCCACACAGACGCAGCATTCGGGAATGTCCCC  296

Query    9  GTCACCTAGCAACAGTTATGATACTTCCCCACAGCCTTGCACTACCAATCAAAATGGGAGGGAGAATAATGAGC  82
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GTCACCTAGCAACAGTTATGATACTTCCCCACAGCCTTGCACTACCAATCAAAATGGGAGGGAGAATAATGAGC  370

Query   83  GATTATCTACATCCAATGGAAAGATGTCACCAACTCGCTACCATGCAAACAGCATGGGTCAGAGGTCATACAGT  156
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GATTATCTACATCCAATGGAAAGATGTCACCAACTCGCTACCATGCAAACAGCATGGGTCAGAGGTCATACAGT  444

Query  157  TTTGAAGCCTCAGAAGAGGACCTAGATGTAGATGATAAAGTGGAAGAATTAATGAGGAGGGACAGCAGTGTGAT  230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TTTGAAGCCTCAGAAGAGGACCTAGATGTAGATGATAAAGTGGAAGAATTAATGAGGAGGGACAGCAGTGTGAT  518

Query  231  AAAAGAGGAAATCAAAGCCTTTCTTGCCAATCGGAGGATTTCCCAAGCAGTTGTTGCACAGGTAACAGGTATCA  304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AAAAGAGGAAATCAAAGCCTTTCTTGCCAATCGGAGGATTTCCCAAGCAGTTGTTGCACAGGTAACAGGTATCA  592

Query  305  GTCAGAGCCGGATCTCTCATTGGCTGTTGCAGCAGGGATCAGACCTGAGTGAACAGAAGAAAAGAGCATTTTAC  378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GTCAGAGCCGGATCTCTCATTGGCTGTTGCAGCAGGGATCAGACCTGAGTGAACAGAAGAAAAGAGCATTTTAC  666

Query  379  CGATGGTATCAACTTGAGAAGACAAACCCTGGCGCTACACTAAGTATGAGACCAGCCCCCATTCCAATAGAGGA  452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CGATGGTATCAACTTGAGAAGACAAACCCTGGCGCTACACTAAGTATGAGACCAGCCCCCATTCCAATAGAGGA  740

Query  453  CCCTGAATGGAGACAAACGCCTCCCCCAGTCTCTGCCACATCTGGTACTTTCCGACTGCGACGAGGGAGTCGAT  526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CCCTGAATGGAGACAAACGCCTCCCCCAGTCTCTGCCACATCTGGTACTTTCCGACTGCGACGAGGGAGTCGAT  814

Query  527  TTACCTGGAGAAAGGAGTGCCTGGCTGTTATGGAAAGTTACTTCAATGAGAATCAATACCCAGATGAAGCAAAG  600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TTACCTGGAGAAAGGAGTGCCTGGCTGTTATGGAAAGTTACTTCAATGAGAATCAATACCCAGATGAAGCAAAG  888

Query  601  AGGGAAGAAATTGCAAACGCTTGCAATGCAGTTATACAGAAGCCAGGCAAAAAGCTGTCAGATCTGGAAAGAGT  674
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AGGGAAGAAATTGCAAACGCTTGCAATGCAGTTATACAGAAGCCAGGCAAAAAGCTGTCAGATCTGGAAAGAGT  962

Query  675  TACCTCCCTGAAAGTATATAATTGGTTTGCTAACAGAAGGAAGGAGATCAAGAGGAGAGCCAATATTGCAGCAA  748
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct  963  TACCTCCCTGAAAGTATATAATTGGTTTGCTAACAGAAGGAAGGAGATCAAGAGGAGAGCCAATATT---GCAA  1033

Query  749  TCCTGGAGAGTCATGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACGGGAATGAC  822
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034  TCCTGGAGAGTCATGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACGGGAATGAC  1107

Query  823  TACTCTGAGCAGGAT-ACTTGGCAAGTAC--GCAATGGGGAGGAGGAGGAGGGAAGA----AGTTCA------G  883
            ||||||||||||||| ||      |||||  ||.||.|.||..|       ..||||    |..|||      |
Sbjct 1108  TACTCTGAGCAGGATGAC------AGTACGAGCCATAGTGACCA-------CCAAGACCCCATCTCATTAGCTG  1168

Query  884  AGGGA--GGCAG-AG--AAGCA--------------------GAGAAGGTAG-----------AAGA-AGAG--  918
            .||.|  ||||| ||  ||.||                    ||.|||| ||           |||| ||||  
Sbjct 1169  TGGAAATGGCAGCAGTCAACCACACTATCTTGGCATTGGCCCGACAAGG-AGCCAACGAAATCAAGACAGAGGC  1241

Query  919  --CGGAGGATC--  927
              .|||.|||.  
Sbjct 1242  CCTGGATGATGAC  1254

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.