Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12575
Subject:
NR_136758.2
Aligned Length:
3894
Identities:
909
Gaps:
2971

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTGATATCAATATGGCGGTTGTCAGCCAGACAAAGACAGTCAGTCTGATGTGATTGAGACAAGGGAGGTTTTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAGGGGGAGACTGGGAGATAGGGGCCTCCCCTCCCCCTTCTCCTCTTCCTGCGCCGGCCTCAACCCCTCCCCAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCCCCTCCCGACGGGCGCCCCACGCGGAAGACACCCCTCCCCCTCCCGCCTTCCCTCCTCCCTATCTCAGCCCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCGTACTGGGACGTTGGGGAGGGGGCTGTGCCGGGCGGAGAGAACTCAGCGAGGATTCTGAGAATGGTAGATAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CGCAGATCATCTCTGGAAAGGATATTGATCCGCCTCATGTAAAGTATGCTTAGTTCCTTTCCAGTGGTTTTGCT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGAAACCATGTCTCATTATACAGATGAACCCAGATTTACCATAGAGCAGATAGATCTGCTTCAGCGACTTCGGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GTACTGGAATGACTAAACATGAAATTCTCCATGCCTTGGAAACTTTGGACCGTCTTGATCAAGAGCATAGTGAC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AAGTTTGGAAGAAGGTCCAGCTATGGAGGAAGTTCATATGGGAATAGTACTAACAATGTCCCAGCATCTTCCTC  592

Query    1  -------------------------------------ATGTCCCCGTCACCTAGCAACAGTTATGATACTTCCC  37
                                                 |||||||||||||||||||||||||||||||||||||
Sbjct  593  TACAGCTACAGCTTCCACACAGACGCAGCATTCGGGAATGTCCCCGTCACCTAGCAACAGTTATGATACTTCCC  666

Query   38  CACAGCCTTGCACTACCAATCAAAATGGGAGGGAGAATAATGAGCGATTATCTACATCCAATGGAAAGATGTCA  111
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CACAGCCTTGCACTACCAATCAAAATGGGAGGGAGAATAATGAGCGATTATCTACATCCAATGGAAAGATGTCA  740

Query  112  CCAACTCGCTACCATGCAAACAGCATGGGTCAGAGGTCATACAGTTTTGAAGCCTCAGAAGAGGACCTAGATGT  185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CCAACTCGCTACCATGCAAACAGCATGGGTCAGAGGTCATACAGTTTTGAAGCCTCAGAAGAGGACCTAGATGT  814

Query  186  AGATGATAAAGTGGAAGAATTAATGAGGAGGGACAGCAGTGTGATAAAAGAGGAAATCAAAGCCTTTCTTGCCA  259
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AGATGATAAAGTGGAAGAATTAATGAGGAGGGACAGCAGTGTGATAAAAGAGGAAATCAAAGCCTTTCTTGCCA  888

Query  260  ATCGGAGGATTTCCCAAGCAGTTGTTGCACAGGTAACAGGTATCAGTCAGAGCCGGATCTCTCATTGGCTGTTG  333
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ATCGGAGGATTTCCCAAGCAGTTGTTGCACAGGTAACAGGTATCAGTCAGAGCCGGATCTCTCATTGGCTGTTG  962

Query  334  CAGCAGGGATCAGACCTGAGTGAACAGAAGAAAAGAGCATTTTACCGATGGTATCAACTTGAGAAGACAAACCC  407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CAGCAGGGATCAGACCTGAGTGAACAGAAGAAAAGAGCATTTTACCGATGGTATCAACTTGAGAAGACAAACCC  1036

Query  408  TGGCGCTACACTAAGTATGAGACCAGCCCCCATTCCAATAGAGGACCCTGAATGGAGACAAACGCCTCCCCCAG  481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGGCGCTACACTAAGTATGAGACCAGCCCCCATTCCAATAGAGGACCCTGAATGGAGACAAACGCCTCCCCCAG  1110

Query  482  TCTCTGCCACATCTGGTACTTTCCGACTGCGACGAGGGAGTCGATTTACCTGGAGAAAGGAGTGCCTGGCTGTT  555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TCTCTGCCACATCTGGTACTTTCCGACTGCGACGAGGGAGTCGATTTACCTGGAGAAAGGAGTGCCTGGCTGTT  1184

Query  556  ATGGAAAGTTACTTCAATGAGAATCAATACCCAGATGAAGCAAAGAGGGAAGAAATTGCAAACGCTTGCAATGC  629
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  ATGGAAAGTTACTTCAATGAGAATCAATACCCAGATGAAGCAAAGAGGGAAGAAATTGCAAACGCTTGCAATGC  1258

Query  630  AGTTATACAGAAGCCAGGCAAAAAGCTGTCAGATCTGGAAAGAGTTACCTCCCTGAAAGTATATAATTGGTTTG  703
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AGTTATACAGAAGCCAGGCAAAAAGCTGTCAGATCTGGAAAGAGTTACCTCCCTGAAAGTATATAATTGGTTTG  1332

Query  704  CTAACAGAAGGAAGGAGATCAAGAGGAGAGCCAATATTGCAGCAATCCTGGAGAGTCATGGGATAGATGTGCAG  777
            ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct 1333  CTAACAGAAGGAAGGAGATCAAGAGGAGAGCCAATATT---GCAATCCTGGAGAGTCATGGGATAGATGTGCAG  1403

Query  778  AGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGAGCAG-----------------  834
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
Sbjct 1404  AGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGAGCAGGGACTTACCCTTTCCAA  1477

Query  835  --------GATAC-----------------------------------------TTGGCAA-------------  846
                    |||||                                         ||.|.||             
Sbjct 1478  AGCTCTTTGATACGGAGTTCCCCTGAAGATGACAGGTGAGAAACATACCCCTTATTTGTAACACCATCTTCAGT  1551

Query  847  -------GTAC-----GCAAT---------------------------------------------GGGGAGG-  862
                   ||||     |||||                                             ||||||| 
Sbjct 1552  GCCTGACGTACATCCTGCAATGCCAGCTTCCTTCACAGCTTTATTGTTTAACACATTGAGCTGCGCGGGGAGGA  1625

Query  863  ------------------AGGAGGAGGG--------------------AAGA----AGTTCA------GAGGGA  888
                              ||||.||..|                    ||||    |..|||      |.||.|
Sbjct 1626  CAGCTTCACACTAGTTCTAGGATGACAGTACGAGCCATAGTGACCACCAAGACCCCATCTCATTAGCTGTGGAA  1699

Query  889  --GGCAG-AG--AAGCA--------------------GAGAAGGTAG-----------AAGA-AGAG----CGG  921
              ||||| ||  ||.||                    ||.|||| ||           |||| ||||    .||
Sbjct 1700  ATGGCAGCAGTCAACCACACTATCTTGGCATTGGCCCGACAAGG-AGCCAACGAAATCAAGACAGAGGCCCTGG  1772

Query  922  AGGATC--------------------------------------------------------------------  927
            |.|||.                                                                    
Sbjct 1773  ATGATGACTGATCAGGGAGGTTAAACATGACAAGTTAACTTAGTTTAGACGTAGCACCTTAGCAGACTTTCCTC  1846

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 1847  GGTCCTTAACATGTGTTCTTACAGTATAACTTGCAGTTTCTTGTATGTCAGGTAGCTGTTAGGGTCTTGTTCTG  1920

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 1921  TGAAGATGGCATGGTGCCCTCAGCCTTTGCATATACTCTCTCAGTATTAACTCCCAGTAAATAATAACCAACCA  1994

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 1995  ACCAACCAAACTTCCCTCTCCCAGCCCCCGAGGCTAGAAAATCTTGCTGCTCCGTCTTAGCATTCCAAGAAAGT  2068

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 2069  GCTTCCAGGTATTTAGATAGCCCTCAGTTCTCAAATATTAGACTACGTGTAAAATCTTGGGTACCTTTAGATTC  2142

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 2143  TTGTAACACTAGTCTGTACTCCCTTTTCCTTCCCCAAGACTGATAGGATGCAAGCTGAGGTCGTGGCACAGGAA  2216

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 2217  TGACAGACACCATTTGGGGAGTATCCACAGAGTCAAAGGAACACTAGAATCCCCACCTCAGCGTGAGGATAATT  2290

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 2291  GATTTCCAGCTGCAATAAGCCGTGCCTCATTATAGCCACACTGTGGCTAGATTATACTTCTTTGGGTGCTGTGC  2364

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 2365  TAAGAATGTCAATGGAAAAAGCCGATCTCAGATTTTGTTTGAAGTTAACATGCCTGACACAGACATCCTTTCCT  2438

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 2439  CTCACAAGCTGTGTGACTTAGTAGATAAAATACTGCCTTCTGCCTTTGGGACCATGATTAAAAACAAAGACAAA  2512

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 2513  AACCAAAAGTCATTAAAAAAAAAAAAAAAAAAAACCCAGCTTGAGAGCATTGGAAAAAAAAAATATGAGCTGAA  2586

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 2587  TGTCTAATGGATGCTAAGTCCAGTTTTCAGAACCACTGTACATTCCACGGCACAGTTAGCAGTGCCTGCCTGGA  2660

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 2661  AAAGTTTTGGAGGTCATCGTGGAAGTTGCTTTGCCTCCTGTCAGTGTCCCCTTTCCCTGCTACCAAAAAAGTCT  2734

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 2735  TTCAAGGATGGAGCTAAGGTCAAAAATGAGTGAAAAAACTTGCAGTGTTTGTATCCATTAAACGGAAGCCCCCT  2808

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 2809  CACTCTGAGAGGTCACTAGAGGACTTCATAGTGGGGTTGTGCTGCTTATCACAGATGCAGACACTTGCCCAGAT  2882

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 2883  AGGAGCAGAGAAAAGCAGGGGACGTTTCCTACTCACATTGTGGCTGTATGAGAACACGATGGGACTGCTTTGCT  2956

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 2957  GTTCTCTTTACTCTGTCCTTGGAGAGGTGTGAAAAGCTGTATTGCTACAGGCAATTTATTTAATAATTGGAAGC  3030

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 3031  CATATTGATAATGGATGTGGTAATATTTGTAAAGTTTAATCTACTTTAAGCGGCAGTAACTAATGGAATTTTTT  3104

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 3105  TCCTTGATCACATATGTAGCACTTTTGTTACTTTTTAAAGATATTTATATTTGATAAATCTTTTTTTCATTTTG  3178

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 3179  AGAACTCAAAATACCAAACAGTGAACTTGCATTCTAAAGTCACCCTGTGATCACCTTGTCATCTAGTAGCAAAA  3252

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 3253  TGATGAACTATTCATGCATCAAAGAAAATTACATCTGCTGGCCTTGTATGAAAATGATCTCTTGGCATCCCGAT  3326

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 3327  TAAATGACACACTGTCACTGTGGGTAAGAGGAAAGAGCCTTCAATGTAGCAGCACAGGGTGCGCCTGAAAGAGG  3400

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 3401  CACAACTGCTGTGGATTTTCTGCCTCGCTCCATCTCTCCTATGTATAATGAAGCCTTGTTTAAAGGGGCATGTG  3474

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 3475  GGGCTGGATGTTAAGCACGGCTTCTTTTTGTCCGTTACCTGAAAACAATTTCTAAGATAAAAGGAAGGTGCCAT  3548

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 3549  TTCCTTACCTCTTCACCCATCCTCCTCCACCAAATGTATTCAACTTAAAACTGTGAGAGAGAGAGACTGAATGA  3622

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 3623  CCTTCCTCAGTTTTCCCTTTCTCATTCAGGAGATACTGAATATCCGCCAGTTTGTAGTTGGTTTCCTTCCACTT  3696

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 3697  AAGGCACACGCTGACTGCATCATTTCCTTATCTGTTAATCCTGCTTATGTGAGTGTGAGGAAAGTCTTTGAGAG  3770

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 3771  GGCATGAAAGTGCCACCTTATATATGTCTGTGACTTTAAAGAGCTATATGCAGGGCCTGGTCCCACTTTTGTCC  3844

Query  928  ----------------------------------------------  927
                                                          
Sbjct 3845  ATGGATTTCAGGGGGAAAAAATATATGTACTTTTTTCAGCTTCCAA  3890

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.