Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12575
Subject:
XR_001745595.1
Aligned Length:
1841
Identities:
728
Gaps:
1025

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TGTTGATATCAATATGGCGGTTGTCAGCCAGACAAAGACAGTCAGTCTGATGTGATTGAGACAAGGGAGGTTTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCAGGGGGAGACTGGGAGATAGGGGCCTCCCCTCCCCCTTCTCCTCTTCCTGCGCCGGCCTCAACCCCTCCCCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTCCCCTCCCGACGGGCGCCCCACGCGGAAGACACCCCTCCCCCTCCCGCCTTCCCTCCTCCCTATCTCAGCCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TTCGTACTGGGACGTTGGGGAGGGGGCTGTGCCGGGCGGAGAGAACTCAGCGAGGATTCTGAGAATGGTAGATA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACGCAGATCATCTCTGGAAAGGATATTGATCCGCCTCATGTAAAGTATGCTTAGTTCCTTTCCAGTGGTTTTGC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGGAAACCATGTCTCATTATACAGATGAACCCAGATTTACCATAGAGCAGATAGATCTGCTTCAGCGACTTCGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CGTACTGGAATGACTAAACATGAAATTCTCCATGCCTTGGAAACTTTGGACCGTCTTGATCAAGAGCATAGTGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CAAGTTTGGAAGAAGGTCCAGCTATGGAGGAAGTTCATATGGGAATAGTACTAACAATGTCCCAGCATCTTCCT  592

Query    1  --------------------------------------ATGTCCCCGTCACCTAGCAACAGTTATGATACTTCC  36
                                                  ||||||||||||||||||||||||||||||||||||
Sbjct  593  CTACAGCTACAGCTTCCACACAGACGCAGCATTCGGGAATGTCCCCGTCACCTAGCAACAGTTATGATACTTCC  666

Query   37  CCACAGCCTTGCACTACCAATCAAAATGGGAGGGAGAATAATGAGCGATTATCTACATCCAATGGAAAGATGTC  110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CCACAGCCTTGCACTACCAATCAAAATGGGAGGGAGAATAATGAGCGATTATCTACATCCAATGGAAAGATGTC  740

Query  111  ACCAACTCGCTACCATGCAAACAGCATGGGTCAGAGGTCATACAGTTTTGAAGCCTCAGAAGAGGACCTAGATG  184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ACCAACTCGCTACCATGCAAACAGCATGGGTCAGAGGTCATACAGTTTTGAAGCCTCAGAAGAGGACCTAGATG  814

Query  185  TAGATGATAAAGTGGAAGAATTAATGAGGAGGGACAGCAGTGTGATAAAAGAGGAAATCAAAGCCTTTCTTGCC  258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TAGATGATAAAGTGGAAGAATTAATGAGGAGGGACAGCAGTGTGATAAAAGAGGAAATCAAAGCCTTTCTTGCC  888

Query  259  AATCGGAGGATTTCCCAAGCAGTTGTTGCACAGGTAACAGGTATCAGTCAGAGCCGGATCTCTCATTGGCTGTT  332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AATCGGAGGATTTCCCAAGCAGTTGTTGCACAGGTAACAGGTATCAGTCAGAGCCGGATCTCTCATTGGCTGTT  962

Query  333  GCAGCAGGGATCAGACCTGAGTGAACAGAAGAAAAGAGCATTTTACCGATGGTATCAACTTGAGAAGACAAACC  406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GCAGCAGGGATCAGACCTGAGTGAACAGAAGAAAAGAGCATTTTACCGATGGTATCAACTTGAGAAGACAAACC  1036

Query  407  CTGGCGCTACACTAAGTATGAGA---CCAGCCCCCATTCCAATAG------AGGACCC--TGAATGGAGACAAA  469
            |||  |.||       |||||.|   |.||||         ||||      ||.||.|  ||||||        
Sbjct 1037  CTG--GTTA-------TATGATATTTCTAGCC---------ATAGTTTGAAAGAACGCTATGAATG--------  1084

Query  470  CGCCTCCCCCAGTCTCTGCCACATCTGGTACTTTC--CGACT-----GCGACGAGGGAGTC------GAT--TT  528
                   ..||||..|||    ||.|.||  ||||  |.|||     .|.||||.|.|| |      |||  .|
Sbjct 1085  -------TTCAGTGGCTG----ATTTTGT--TTTCTTCAACTACATAACTACGATGCAG-CTGCCCTGATGACT  1144

Query  529  ACCTGGAGAA--AGGAGTGCCTGGCTGTTAT--GGAAAGTTACTTC--AATGAGAATC-----AATACCCAGAT  591
            .||.||||.|  ||.||            ||  ||||||      |  ||||| ||||     ||.||..||||
Sbjct 1145  CCCAGGAGCAGCAGTAG------------ATTGGGAAAG------CAGAATGA-AATCTTAAGAAAACTAAGAT  1199

Query  592  GAAGCAA--------------AGAG--GGAAGAAAT-TGCAAACGCT-TGCAATG-------CAG------TTA  634
            ||  |||              ||||  |||||||.| .||||...|| |.||| |       |||      |||
Sbjct 1200  GA--CAAAAAAATTTATGTCTAGAGTTGGAAGAAGTAGGCAAGATCTATTCAA-GATACTAACAGGTGATTTTA  1270

Query  635  TACAGAAGCCAGGCAAAAAGCTG----------------TCAGATCT------------GGAAAG----AGTTA  676
            ||.||         ..|||.|||                ||| ||||            ||.|||    |||.|
Sbjct 1271  TAAAG---------TGAAATCTGAAGTTATGGGACTATCTCA-ATCTATACTTTACACAGGCAAGTGACAGTGA  1334

Query  677  -CCTCCC------TGAAAGTATATAATTGGTTTGC------TAA-----CAG-----AAG------------GA  715
             |||.||      ||.||.|.||..|||||.||||      |||     |||     |||            | 
Sbjct 1335  GCCTGCCCTCATGTGTAAATTTAAGATTGGGTTGCGTTCTGTAATGCTGCAGCCTCAAAGCCTTTGCACACAG-  1407

Query  716  AGGAGATCAAGAGGAGAGCCAATATTGC--------AGCAAT---CCTG-------------GAGAGTCAT-GG  764
            |..|.|.||..||..||   ||||||||        ||||.|   .|||             ||..||||| |.
Sbjct 1408  ACTAAAACACTAGTTGA---AATATTGCATAATAATAGCATTGGCTCTGAGGTAGAAATAAAGAATGTCATAGA  1478

Query  765  GAT---------------AG-ATGTG-----------------------CAG---------------AGTCCAG  784
            |||               || |||||                       |||               .||||||
Sbjct 1479  GATGTATTTTTGTGTGTAAGTATGTGATAAGATTTTTTTCCCTAAAGGTCAGTTTCTCAATCCGAATGGTCCAG  1552

Query  785  G-AGGCCACTCAAACAGTGATGA---TGTCGA---CGGGAATGA----------CTACTCTGA---GCAGGATA  838
            | |||   .|.||||||..|.||   |.||.|   |...|||.|          |||.|||||   .|||  |.
Sbjct 1553  GCAGG---ATGAAACAGAAAAGAACCTATCAACCTCTACAATAATATTAAAAATCTATTCTGACTCCCAG--TT  1621

Query  839  CTTGGCAAGTACGCAATGGGGAGGAGGAGGAGGGAAGAAGTTCAGAGGGAGGCAGAGA----------------  896
            .||    |.|..|.||||                     .||||||.|.|  ||||.|                
Sbjct 1622  TTT----ATTTTGAAATG---------------------TTTCAGATGTA--CAGAAAATTCAAAAGACTAACA  1668

Query  897  -AGCAGAGA-----------------AGGTAGAAGAA----------------GAGCGGAGGATC  927
             ||.|||.|                 ||.||.||.||                |.|||.||.   
Sbjct 1669  CAGTAGACACCTGTTTACTCTTTCTTAGATATAATAATTATTACCATTTGGCTGGGCGCAGT---  1730

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.