Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12614
- Subject:
- XM_006517462.3
- Aligned Length:
- 3069
- Identities:
- 1526
- Gaps:
- 1377
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGAGCCCCGGGCTGCCACGACTGGCGAGCTCGTGCGGGCCGCGTCCCCCTCCTTCCAGGCCCGGCTCTGGAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAACCTGCAGCTGGGGGTGGGCAAGGGCAAGGGCGGCGGAGGCGGGCGCGCTGGGGGCCCCGAGCACCGCACTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGCCACTCCGACCCCGTCCCCGCCGCCCCCGGGGACCACGCAGGACGCCCTGGCCGGTGTGGGAAGTACTGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGCAGGTGGAGCGGCTTCAAGAAGCGGAAGCAAGTGCTGGACCGAGTGTTCTCCTCCTCACAGCCCAACCTGTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTGCTCCTCACCAGAGCCCCTGGAGCCAGGCGGAGCAGGCAGAGCCGAGCAAGGGTCCACGCTGCGCCGCCGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TACGCGAACATCTGCTGCCCGTGGCTAAGGGGTCCTCGACAGCCACAGGGACAGGCGGAGTGACGCCTCCTGGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGACGCTCTCCGGACTCAGCTCCTTCTTCGTCTTCCGCCTCATCTTCCCTGTCCTCTTCTCCCCAACCGCCCCC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGGGGGGACCGCGTCCGTGATGAGAGTACACGGCGTGGGGGCCCTGGGGTGCACCTGTGCCACCAAAAGAGCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCTCTCTGCCCGGAACCGCGTGCCTGGAGCAGTTGCTGGAACCGGCGCCACCCCCCGCAGAACCGGCCCGGGGT 666
Query 1 -------------ATGCTAGACAGCTGC--AAGCTGA-AAAGTGC----CTGCAATTTGCCATTTATTTGTAAT 54
|.||| |||| ||| || |.||.|| ||||| |||
Sbjct 667 CCCGCCGAACCCCAGGCT------CTGCAGAAG--GACATAGAGCGCGACTGCA----GCC------------- 715
Query 55 AAGAAAATAA-TAAACACTGCTGGAACCAGTAATGCAGAAGTCCCCTTGGCTGATCCCGGAATGTACCAGCTGG 127
||||||||| | ||.|.|||||.||||||||||||.|||||.||||||||||||||||||||||||.|||
Sbjct 716 -AGAAAATAAGT----ACAGTTGGAAACAGTAATGCAGATGTCCCTTTGGCTGATCCCGGAATGTACCAGTTGG 784
Query 128 ACATTACATTAAGAAGGGGTCAAAGTTTAGCTGCTCGAGATCGAGGAGGGACGAGTGATCCATATGTGAAGTTT 201
|.||.|||.|||||||||||||||||||||||||.||.||||||||||||||.||.|||||.||||||||||||
Sbjct 785 ATATCACACTAAGAAGGGGTCAAAGTTTAGCTGCCCGTGATCGAGGAGGGACAAGCGATCCGTATGTGAAGTTT 858
Query 202 AAAATCGGAGGAAAAGAAGTTTTTAGAAGTAAGATAATACACAAGAACCTCAACCCTGTGTGGGAAGAAAAAGC 275
|||||.|||.|||||||||||||||||||.||.||.||.|||||||||||.||.|||||||||||.|||||.||
Sbjct 859 AAAATTGGAAGAAAAGAAGTTTTTAGAAGCAAAATTATCCACAAGAACCTAAATCCTGTGTGGGAGGAAAAGGC 932
Query 276 TTGTATTCTGGTTGATCATCTTAGGGAGCCATTGTATATAAAGGTATTTGACTATGATTTTGGACTACAGGATG 349
|||..|.||..||||.||||||||.||||||.|.|||||.||||||||||||||||||||||||||.||.||||
Sbjct 933 TTGCGTGCTCATTGACCATCTTAGAGAGCCACTATATATCAAGGTATTTGACTATGATTTTGGACTGCAAGATG 1006
Query 350 ACTTTATGGGCTCAGCCTTTCTGGATCTGACACAATTGGAGTTAAACAGGCCCACAGATGTGACCCTTACTCTG 423
||||||||||||||||||||||.|||||.||.||.|||||||||||||||.||||||||||.|||||.||||||
Sbjct 1007 ACTTTATGGGCTCAGCCTTTCTTGATCTCACTCAGTTGGAGTTAAACAGGTCCACAGATGTTACCCTAACTCTG 1080
Query 424 AAAGATCCTCATTATCCTGACCATGATCTTGGAATCATTTTGCTCTCAGTCATCCTTACCCCTAAAGAAGGAGA 497
|||||.||.|||||||||||||||||.|||||||||||||||||.||||||||||||||.|||||.|||||.||
Sbjct 1081 AAAGACCCCCATTATCCTGACCATGACCTTGGAATCATTTTGCTGTCAGTCATCCTTACGCCTAAGGAAGGTGA 1154
Query 498 GTCCAGGGATGTG------------------------------------------------ACAATGCTAATGA 523
...|||||||||| |||||||||||||
Sbjct 1155 ACACAGGGATGTGCAGAGTTCAATACACAGCTTTCTTCCTTGGAGAATTTGTGACATAAAAACAATGCTAATGA 1228
Query 524 GGAAGAGTTGGAAAAGATCAAGTAAGGAACTTTCAGAAAATGAAGTGGTTGGATCTTATTTCTCTGTGAAGTCT 597
|||||||||||||||||||.|||||||||||.|||||||||||||||.||||||.|.|.|||||||||.|||||
Sbjct 1229 GGAAGAGTTGGAAAAGATCCAGTAAGGAACTCTCAGAAAATGAAGTGTTTGGATTTCACTTCTCTGTGCAGTCT 1302
Query 598 CTCTTTTGGAGGACGTGCGGCAGGCCAGCTCTTCCTGTCCTGGGCTTCTGCAGAGCAGAGCTTCAGAATCCTTA 671
.|||||||||||
Sbjct 1303 TTCTTTTGGAGG-------------------------------------------------------------- 1314
Query 672 TTGCAAAAATGTACAATTTCAGACCCAAAGTTTACGCCTATCAGACCTACACAGAAAATCGCATCTTTGGAGAG 745
|||||||||||||||||||||||.||.||||..|||||.|||||.||.||||||||||
Sbjct 1315 ----------------TTTCAGACCCAAAGTTTACGCCTGTCCGACCAGCACAGGAAATCACACCTTTGGAGAG 1372
Query 746 GAATAGTCAGCATCACCTTGATTGAAGGGAGAGACCTCAAGGCCATGGATTCCAACGGGTTGAGCGATCCCTAC 819
|||||||||||||||||||||||||.||..||||.|||||.||.|||||||||||.||||||||.|||||.||.
Sbjct 1373 GAATAGTCAGCATCACCTTGATTGAGGGTCGAGATCTCAAAGCAATGGATTCCAATGGGTTGAGTGATCCATAT 1446
Query 820 GTGAAGTTCCGGCTTGGGCATCAGAAGTACAAGAGCAAGATTATGCCAAAAACGTTGAATCCTCAGTGGAGGGA 893
|||||||||||||||||.|||||||||||||||||||||||||||||.|||||.|||||.||||||||||||||
Sbjct 1447 GTGAAGTTCCGGCTTGGCCATCAGAAGTACAAGAGCAAGATTATGCCCAAAACTTTGAACCCTCAGTGGAGGGA 1520
Query 894 ACAATTTGATTTTCACCTTTATGAAGAAAGAGGAGGAGTCATTGATATCACTGCATGGGACAAAGATGCTGGGA 967
.|||||||||||.||.||.||||||||||||||.||..||||.||.||||||||.|||||||||||||||||||
Sbjct 1521 GCAATTTGATTTCCATCTCTATGAAGAAAGAGGTGGGATCATGGACATCACTGCCTGGGACAAAGATGCTGGGA 1594
Query 968 AAAGGGATGATTTCATTGGCAGGTGCCAGGTCGACCTGTCAGCCCTCAGTAGGGAACAGACGCACAAGCTGGAG 1041
||||.|||||.||.|||||.|||||||||||.||||||||..|||||||||||||.||.||.||||||||||||
Sbjct 1595 AAAGAGATGACTTTATTGGAAGGTGCCAGGTTGACCTGTCTTCCCTCAGTAGGGAGCAAACTCACAAGCTGGAG 1668
Query 1042 TTGCAGCTGGAAGAGGGTGAGGGACACCTGGTGCTGCTGGTCACTCTGACAGCATCAGCCACAGTCAGCATCTC 1115
||.||.|||||||||||||||||.||||||||.|||||.||||||||||||||.||.|||||||||.|.|||||
Sbjct 1669 TTACATCTGGAAGAGGGTGAGGGCCACCTGGTTCTGCTTGTCACTCTGACAGCCTCGGCCACAGTCTGTATCTC 1742
Query 1116 TGACCTGTCTGTCAACTCCCTGGAGGACCAGAAGGAACGAGAGGAGATATTAAAGAAATATAGCCCATTGAGGA 1189
||||||.||||||||.|||.||||||||||||||||.||.||.|||||||||||||.||||||||||.||||||
Sbjct 1743 TGACCTCTCTGTCAATTCCATGGAGGACCAGAAGGAGCGGGAAGAGATATTAAAGAGATATAGCCCACTGAGGA 1816
Query 1190 TATTTCACAACCTGAAAGATGTGGGATTTCTCCAGGTGAAAGTCATCAGAGCGGAAGGGTTAATGGCTGCCGAC 1263
|||||.|||||||.|||||.||||||||||||||||||||||||||||||||.|||||.||.||||||||.||.
Sbjct 1817 TATTTAACAACCTAAAAGACGTGGGATTTCTCCAGGTGAAAGTCATCAGAGCAGAAGGTTTGATGGCTGCAGAT 1890
Query 1264 GTCACTGGAAAAAGTGACCCATTTTGTGTGGTAGAACTGAACAACGATAGACTGCTAACACATACTGTCTACAA 1337
|||||.||.||||||||.|||||||||||.||||||||||||||.|||||.|||||||||||.|||||.|||||
Sbjct 1891 GTCACAGGTAAAAGTGATCCATTTTGTGTAGTAGAACTGAACAATGATAGGCTGCTAACACACACTGTGTACAA 1964
Query 1338 AAATCTCAATCCTGAGTGGAATAAAGTCTTCACGTTCAACATTAAAGATATCCATTCAGTTCTTGAAGTGACAG 1411
|||.|||||||||||||||||.|||||.|||||.||.|||||||||||.||.||||||||||||||||||||||
Sbjct 1965 AAACCTCAATCCTGAGTGGAACAAAGTGTTCACATTTAACATTAAAGACATTCATTCAGTTCTTGAAGTGACAG 2038
Query 1412 TTTATGATGAAGATCGGGATCGAAGTGCTGACTTTCTGGGCAAAGTTGCTATACCATTGCTGTCTATTCAAAAT 1485
||||||||||||||||.||.||.|||||.|||||||||||||.|||.|||||||||||||||||||||||||||
Sbjct 2039 TTTATGATGAAGATCGTGACCGGAGTGCCGACTTTCTGGGCAGAGTCGCTATACCATTGCTGTCTATTCAAAAT 2112
Query 1486 GGTGAACAGAAAGCCTACGTCTTGAAAAACAAGCAGCTGACAGGGCCAACAAAGGGGGTCATCTATCTTGAAAT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2113 GGTGAACAGAAAGCCTACGTCTTGAAAAACAAGCAGCTGACAGGGCCAACAAAGGGGGTCATCTATCTTGAAAT 2186
Query 1560 AGATGTGATTTTTAATGCTGTGAAAGCCAGCTTACGAACATTAATACCCAAAGAACAGAAGTACATTGAAGAGG 1633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 2187 AGATGTGATTTTTAATGCTGTGAAAGCCAGCTTACGAACATTAATACCCAAAGAACGGAAGTACATTGAAGAGG 2260
Query 1634 AAAACAGACTCTCTAAACAGCTGCTACTAAGAAACTTTATCAGAATGAAACGTTGTGTCATGGTGCTGGTAAAT 1707
|||||||||||||||||||||||||.|||||||||||||||||||..||||||||||||||.|||||.|||||.
Sbjct 2261 AAAACAGACTCTCTAAACAGCTGCTTCTAAGAAACTTTATCAGAACAAAACGTTGTGTCATAGTGCTTGTAAAC 2334
Query 1708 GCTGCATACTACGTTAATAGTTGCTTTGATTGGGATTCACCCCCAAGGAGTCTCGCTGCTTTTGTG-------- 1773
||||||||||||||||||||||||||||||||||||||.||||||||||||||.||||||||||||
Sbjct 2335 GCTGCATACTACGTTAATAGTTGCTTTGATTGGGATTCGCCCCCAAGGAGTCTTGCTGCTTTTGTGCTCTTTCT 2408
Query 1774 --GCCTTGTATGGGACTTT--------CAT-----------------------TAATGTC-------------- 1800
.|.||||.|||.||||| ||| ||.||.|
Sbjct 2409 CCTCATTGTCTGGAACTTTGAGCTCTACATGATACCACTGCTGCTGTTGTTACTATTGACATGGAACTACTTCC 2482
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2483 TGATAATATCCGGGAAAGACAACAGGCAACGGGACACAGTAGTGGAGGACATGCTGGAGGACGAAGAGGAAGAA 2556
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2557 GATGACAGAGATGACAAGGATGGTGAAAAGAAAGGATTTATAAATAAAATCTATGCGATCCAGGAAGTCTGTGT 2630
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2631 CAGTGTGCAGAACATCCTAGATGAAGTGGCTTCCCTTGGTGAAAGGATAAAGAATACTTTCAACTGGACTGTCC 2704
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2705 CCTTCTTAAGCTGGCTGGCCATTGTAGCCCTGTGTGTGTTCACCGCCATTCTGTACTTCATCCCACTGAGATAC 2778
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2779 ATTGTTCTTGTTTGGGGAATTAATAAATTTACAAAAAAGCTTCGGAGTCCATATGCAATTGATAACAATGAACT 2852
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2853 ACTTGACTTCCTTTCCAGAGTTCCTTCAGATGTACAAGTGGTGCAGTACCAAGAACTGAAACCAGATCATTCTC 2926
Query 1801 ----------------------------------- 1800
Sbjct 2927 ATAGCCCATACAAAAGGAAGAAAAACAACCTTGGC 2961
