Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12652
- Subject:
- NM_024913.5
- Aligned Length:
- 3084
- Identities:
- 1676
- Gaps:
- 1401
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGTCTGTCGCCCAGTGTTCCCTTGTCGTCGGCGATTTTGCCCCCGACCCTTCTTGGTGGGCTTAGTGGTGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AATCTGTCTCTTCTACCAGACTCTGACCCTCCGAGGGTCGAGGAAGCTCACAGCCGCTGCCCCTGGGGCTGTCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CACACACATCCACTGAAACCCAGGCAAGCAGATGCAAGAAAGGATTCTCTCAGGACAAACAGTGCTTCCTTCTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCTGGTAATGCCCAGGAAACCAGAAAGGTCAAAGAATCAATGGAGACACACTTTGGCAGCCATGGCCGAAGGGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CATACTCTACAGGCCTCCTTTCTACAGCAAAACAGAGCTTCAGCTACACCAGCACATTCTGACTCAACATGGCT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATACGGTTGTCATCGCTGAAGAAAGGCTCAATGCTGGCCTAGGGCCGGGGCTACTAGAACAAGGTGATCTGGGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCTTGGGATCTGCTCATTTGCCTGTCTTCTAAGAAAGCAGAAGGAACACCCTGTATATCCAAGGAAGTCATGTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCAGTTAGGTTTACATCAAAAGGCAAACAGATTACCAGAAATACAGCAGCCACTTTGCAGAAAGGAAGGATTAT 592
Query 1 --------------------------------------------------------------------ATGCAA 6
||||||
Sbjct 593 GTCAAATAGTTAGAAGATTCCCAGAACTGCAACTTCCAGTGAGTCCCTCTGTGTGTCTGGATCAGGGAATGCAA 666
Query 7 TTAAAGCCGAGTACTTCGAGTCACCTTTTAAAAACAGTGAAGCCACGTGTGTGGAAACCAGGGGACTGGAGTCG 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTAAAGCCGAGTACTTCGAGTCACCTTTTAAAAACAGTGAAGCCACGTGTGTGGAAACCAGGGGACTGGAGTCG 740
Query 81 TGAACAGCTGAATGAAACGACAGTCCTTGCTCCACATGAAACAATCTTTCGAGCCGAAGATCTATCTGTGATTC 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TGAACAGCTGAATGAAACGACAGTCCTTGCTCCACATGAAACAATCTTTCGAGCCGAAGATCTATCTGTGATTC 814
Query 155 TTAAAGCGTATGTGTTGGTGACGTCCTTAACCCCTTTGCGTGCATTCATTCATTCGACTGGCACAGTTTGGAAT 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 815 TTAAAGCGTATGTGTTGGTGACGTCCTTAACCCCTTTGCGTGCATTCATTCATTCGACGGGCACAGTTTGGAAT 888
Query 229 CCACCAAAGAAAAAACGCTTCACTGTCAAGCTGCAAACATTTTTTGAGACATTCCTGAGAGCCAGTTCACCTCA 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CCACCAAAGAAAAAACGCTTCACTGTCAAGCTGCAAACATTTTTTGAGACATTCCTGAGAGCCAGTTCACCTCA 962
Query 303 ACAGGCTTTTGACATTATGAAGGAAGCAATTGGCAAACTACTGCTAGCCGCTGAAGTATTCAGTGAAACATCTA 376
||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 963 ACAGGCTTTTGACATTATGAAGGAAGCAATTGGCAAACTACTGCTAGCGGCTGAAGTATTCAGTGAAACATCTA 1036
Query 377 CTCTGGGACCAAAGACCTTCCATAGATGCAGATTCTGCTTTCAACTTCTAACTTTTGATATTGGTTATGGCAGT 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTCTGGGACCAAAGACCTTCCATAGATGCAGATTCTGCTTTCAACTTCTAACTTTTGATATTGGTTATGGCAGT 1110
Query 451 TTCATGTACCCTGTAGTGCTCCAGGTACACGAGCATTTAAATTTTCAAGATTATGATAATATGGATTTTGAGGA 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TTCATGTACCCTGTAGTGCTCCAGGTACACGAGCATTTAAATTTTCAAGATTATGATAATATGGATTTTGAGGA 1184
Query 525 CCAAAATACAGAAGAATTCCTTTTAAATGACACTTTCAATTTTCTCTTCCCTAATGAATCATCACTTTCCATAT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CCAAAATACAGAAGAATTCCTTTTAAATGACACTTTCAATTTTCTCTTCCCTAATGAATCATCACTTTCCATAT 1258
Query 599 TTTCTGAGATATTTCAGAGACTTTATAGATCAGATGTTTTCAAGGGTGAAAACTATCAAAAGGAACTAAATCAG 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTTCTGAGATATTTCAGAGACTTTATAGATCAGATGTTTTCAAGGGTGAAAACTATCAAAAGGAACTAAATCAG 1332
Query 673 TGTCTGTCCTTAGAAGAAATTAACTCAATTATGACTTTCATAAAGGAACTTGGAAGTCTGGGACAATTCCAACT 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TGTCTGTCCTTAGAAGAAATTAACTCAATTATGACTTTCATAAAGGAACTTGGAAGTCTGGGACAATTCCAACT 1406
Query 747 GCTCTTCCCATCTACTACTCCTGGGATTCAGTCACTGATGCATGAATTTTATGATGTGGCAAATCCTGTGGGAA 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GCTCTTCCCATCTACTACTCCTGGGATTCAGTCACTGATGCATGAATTTTATGATGTGGCAAATCCTGTGGGAA 1480
Query 821 ATCCTGGCTCAGTCCTGACCCAATACTGGTCTCTTTTAAATGTATTTGAACAATTTCAGTTCATGAATAAAAAG 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 ATCCTGGCTCAGTCCTGACCCAATACTGGTCTCTTTTAAATGTATTTGAACAATTTCAGTTCATGAATAAAAAG 1554
Query 895 ACACAGCCACATCCACTGGAATGGAATTCTTTCACAGAAGATAAGAACATTGAAAAACCACAAGTGCCATTTGA 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 ACACAGCCACATCCACTGGAATGGAATTCTTTCACAGAAGATAAGAACATTGAAAAACCACAAGTGCCATTTGA 1628
Query 969 TGCAATAGAAAATAAAAAAGCTGGAGTTCCACAAATTAAAAATGAAAATAAAGAAATACATTGCAGTGATGATG 1042
|||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TGCAATAGAAAATAAAAAAGCTGCAGTTCCACAAATTAAAAATGAAAATAAAGAAATACATTGCAGTGATGATG 1702
Query 1043 AAAACACACCATGTCATATCAAGCAGATCTTCACACATCCACATTTGGAACTAAATCCTGACTTTCATCCAAAG 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AAAACACACCATGTCATATCAAGCAGATCTTCACACATCCACATTTGGAACTAAATCCTGACTTTCATCCAAAG 1776
Query 1117 ATCAAAGATTATTACTGTGAAGTCCCATTTGATGTGGTAACAGTGACAATTGGAGTGGAAACTCCTAAGTGTCT 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 ATCAAAGATTATTACTGTGAAGTCCCATTTGATGTGGTAACAGTGACAATTGGAGTGGAAACTCCTAAGTGTCT 1850
Query 1191 GTGCAAGGTGCACCTGTACGAGCAGGCAGGGCCAAGCTTTGCCAGCTACCCTCTGGGCTTAGGAATGAACAAAA 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GTGCAAGGTGCACCTGTACGAGCAGGCAGGGCCAAGCTTTGCCAGCTACCCTCTGGGCTTAGGAATGAACAAAA 1924
Query 1265 TCTCAATATTTGTTGTGGATGAATCTCCAGCACACGGTGAGACTCTGATCACGTACAAACTCACCATCTATAGA 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TCTCAATATTTGTTGTGGATGAATCTCCAGCACACGGTGAGACTCTGATCACGTACAAACTCACCATCTATAGA 1998
Query 1339 GAAGACCGCCCAAGTCTGCCCTTGTTTGAGGCCTTCACAGCATGTGGTTTTGTGCAGGATTGTGGTTTGCTGAT 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 GAAGACCGCCCAAGTCTGCCCTTGTTTGAGGCCTTCACAGCATGTGGTTTTGTGCAGGATTGTGGTTTGCTGAT 2072
Query 1413 TCATCCAGAGGAAACCTGTGGGTTACAGCCTATTTCTTCTGACTACATTGAAGCCATTTTACAGTCTGAACTAA 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 TCATCCAGAGGAAACCTGTGGGTTACAGCCTATTTCTTCTGACTACATTGAAGCCATTTTACAGTCTGAACTAA 2146
Query 1487 AAAGATGTCCATCTGGGGACATGAAAGGCCAGTGGATTGTGCCTTGCCTTAGTTGTTCGGACAACAGGACGTGT 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 AAAGATGTCCATCTGGGGACATGAAAGGCCAGTGGATTGTGCCTTGCCTTAGTTGTTCGGACAACAGGACGTGT 2220
Query 1561 GACTGGAGAGAAATAACCTGGCAGCCCCACAACTGCCAATATGGTGTCCTAACTAAGCCTCAACTCCAGCAGTG 1634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 GACTGGAGAGAAATAACCTGGCAGCCCCACAACTGCCAATATGGTGTCCTAACTAAGCCTCAACTCCAGCAGTG 2294
Query 1635 CCTGGGAGGAAGGAAG----------TTGGGTGTCGATGTC------CAGAGAGTTC-----CTA-------GA 1680
|||||||||||||||| |||| .||| || |||||.|.|| ||| ||
Sbjct 2295 CCTGGGAGGAAGGAAGATTCTGTTCATTGG----AGAT-TCAACCAACAGAGGGATCATGTACTATCTTATTGA 2363
Query 1681 A--GCCGTAAT--------------------------------------------------------------- 1689
| ||.| |||
Sbjct 2364 AAGGCTG-AATGAAACGTTGCAGGAATGGCAGAAAGTACATGGCACTAAATTCTATCACAACGTCAATGGTGGG 2436
Query 1690 -------------------------------------------------------------------------- 1689
Sbjct 2437 AAGACTTTGATCAGTTATTCCTACTATCCCCAGTTCTGGATAAGCCCTTCATTGAGACCAACATTTGAAAATGC 2510
Query 1690 -------------------------------------------------------------------------- 1689
Sbjct 2511 ACTTGAACACCTCTTGCAAAGATCACGTCCCCTAGAGAATACTGGCCAGACTGTATTGGTTGTTGGTGGTGTTC 2584
Query 1690 -------------------------------------------------------------------------- 1689
Sbjct 2585 AGTGGCTTAATTCCAATCACCTGCAAATTATTCACAAAGTTTTGAAGAGGGAAAATTTACTCAATATCCTAGTG 2658
Query 1690 -------------------------------------------------------------------------- 1689
Sbjct 2659 ATCATCAAAACTTTGGGAATTGGATTTCATCTGCCAGTGGATGGAGTACATTTCTTAACACAGAGTGAAGTACA 2732
Query 1690 -------------------------------------------------------------------------- 1689
Sbjct 2733 GAACTTATGGAAAGAAAATTTGATTATTCTGGATACTGCAAAAAAACATGGCTATGAAGTAGTTGACACATTCA 2806
Query 1690 -------------------------------------------------------------------------- 1689
Sbjct 2807 CTATAACAATGGGGCGTTACAAAGAGTTTCTACAGGGGAAGTGTGGATGTCATTTCCATGAGGTAGTGAAATCA 2880
Query 1690 -------------------------------------------------------------------------- 1689
Sbjct 2881 AAGTTATCCAAAGAATATAACTTTATTAAAATGAAAAGATCAAGAAATCATATCATGGGAAGATATTTCAGCAA 2954
Query 1690 -------------------------------------------------------------------------- 1689
Sbjct 2955 TCAAAGCAAACTACAACAAGGCACTGTAACAAATTTTCGATCGCCATATCATGTCAGAGGTCCAATAAATCAGG 3028
Query 1690 -------------------------------------------------- 1689
Sbjct 3029 TTTGTTCTGAAATCCTTCTCAGCAGGATGTGTGCAAATAAAAGGACTATG 3078
