Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12662
- Subject:
- NR_144541.1
- Aligned Length:
- 2598
- Identities:
- 1121
- Gaps:
- 1477
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TACTTAAGGTCAGGGAGGTCGAGGCTGCAGTGAGCCATGATCGCGCCACTGCATTCCTGCCTGGGGGATAGAGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCCTGTCTGAGAAGTGAAGGAAAGGGGAATGGTAGAGGGAAGGGGAAGAGAAAGAAAAGAAAACCTATGGAGGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACGTTAATAATCAGAAGGGGCCAGAGGAAGCCACCTGACACATTTGTGAGACAATTTAAAAGGCGTTCTCATAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATTCTCACTTTGATACAACAACCCTGCAAAGTGCGCACGGAAGGTGTTATTAACTCCGTTTTACAGATATCCGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CATTCACCTGAGCAGGTTTCGAGATCCAGGCAGAGCGGTAGACTTAGAGAAATTCTGTTCTGAAACTATTGACA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCATTCAACCAGCTCTCGTCCTAGCAACAGGAGACCTGACAGATGCCAAAACAAAGGAACAGTTGGGATCCAGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CAGCATGAGGTAGAATGGCAAACCTACCAGGGTATTCTGAAGAAGACAAGAGTCATGGAAAAAACCAAGTGGCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGATATCAAAGGAAATCATGATGCATTCAATATTCCAAGTCTGGACAGCATCAAGAATTATTACAGGAAATATT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTGCTGTACGTAGAGATGGCTCTTTCCATTATGTCCACAGTACTCCCTTTGGCAACTATTCGTTCATCTGTGTA 666
Query 1 ------------------------------------------------------------------ATGGAGGA 8
||||||||
Sbjct 667 GATGCCACTGTAAATCCAGGGCCTAAGAGACCCTATAATTTCTTTGGAATTTTAGATAAGAAAAAGATGGAGGA 740
Query 9 GCTCTTATTACTGGCCAAGGAAAGCAGTCGGAGCAACCATACAATTTGGTTTGGACACTTTACAACATCCACTA 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCTCTTATTACTGGCCAAGGAAAGCAGTCGGAGCAACCATACAATTTGGTTTGGACACTTTACAACATCCACTA 814
Query 83 TTCTTTCTCCATCACCAGGAATCCGGTCAATAATGAGTTCGGCTATAGCTTATTTGTGTGGACATCTCCATACA 156
|||||||||||||||||||||||||||||||||||
Sbjct 815 TTCTTTCTCCATCACCAGGAATCCGGTCAATAATG--------------------------------------- 849
Query 157 CTTGGTGGACTGATGCCTGTTTTGCACACTCGTCACTTCCAGGGCACTTTGGAACTTGAGGTGGGAGACTGGAA 230
||||||||||||||||||||||||||||||||||
Sbjct 850 ----------------------------------------AGGGCACTTTGGAACTTGAGGTGGGAGACTGGAA 883
Query 231 GGATAATAGGAGGTACCGGATTTTTGCTTTTGATCACGACCTCTTTAGCTTTGCAGATTTGATCTTTGGGAAGT 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 GGATAATAGGAGGTACCGGATTTTTGCTTTTGATCACGACCTCTTTAGCTTTGCAGATTTGATCTTTGGGAAGT 957
Query 305 GGCCTGTGGTTCTTATCACCAATCCTAAATCACTCCTTTATAGTTGTGGTGAACATGAACCACTAGAAAGACTT 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GGCCTGTGGTTCTTATCACCAATCCTAAATCACTCCTTTATAGTTGTGGTGAACATGAACCACTAGAAAGACTT 1031
Query 379 CTTCACTCAACACACATCAGAGTCTTGGCCTTTTCCTTATCCTCCATTACTTCTGTCACAGTTAAGATTGATGG 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 CTTCACTCAACACACATCAGAGTCTTGGCCTTTTCCTTATCCTCCATTACTTCTGTCACAGTTAAGATTGATGG 1105
Query 453 AGTTCATTTAGGCCAGGCTGTTCATGTGTCTGGTCCCATTTTCGTACTGAAGTGGAATCCTAGAAACTACAGTA 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 AGTTCATTTAGGCCAGGCTGTTCATGTGTCTGGTCCCATTTTCGTACTGAAGTGGAATCCTAGAAACTACAGTA 1179
Query 527 GTGGGACACATAACATAGAAGTAATCGTCCAGGATTCTGCTGGAAGAAGTAAGAGTGTTCACCACATATTTTCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 GTGGGACACATAACATAGAAGTAATCGTCCAGGATTCTGCTGGAAGAAGTAAGAGTGTTCACCACATATTTTCT 1253
Query 601 GTTCAAGAGAATAATCATCTCAGTTTTGATCCCCTGGCATCATTTATTCTCCGTACTGATCACTACATCATGGC 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GTTCAAGAGAATAATCATCTCAGTTTTGATCCCCTGGCATCATTTATTCTCCGTACTGATCACTACATCATGGC 1327
Query 675 CCGGGTCCTTTTTGTGCTGATTGTGCTGAGCCAGCTCACCATTCTCATTATTTTTAGATATCGAGGATACCCAG 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 CCGGGTCCTTTTTGTGCTGATTGTGCTGAGCCAGCTCACCATTCTCATTATTTTTAGATATCGAGGATACCCAG 1401
Query 749 AGCTTAAAGAACCTTCAGGGTTTATAAATCTGACCTCATTTTCTCTTCATGTCTTGAGCAAAATAAACATCTTC 822
||||||||
Sbjct 1402 AGCTTAAA------------------------------------------------------------------ 1409
Query 823 TACTATTCTGTGTTGTTGTTGACCCTGTATACAGTGCTGGGTCCATGGTTTTTTGGTGAAATCATTGATGGCAA 896
|||||||||||||||||||||||||||||||||||
Sbjct 1410 ---------------------------------------GGTCCATGGTTTTTTGGTGAAATCATTGATGGCAA 1444
Query 897 ATTTGGTTGCTGCTTTTCCTTTGGGATATTTGTTAATGGACATTTCCTACAAGGCAGCATAACATTTATAATTG 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 ATTTGGTTGCTGCTTTTCCTTTGGGATATTTGTTAATGGACATTTCCTACAAGGCAGCATAACATTTATAATTG 1518
Query 971 GAATTCTCCAGCTGGCGTTTTTTAACATCCCCTTGATGGCTTACATGTGTTGGAGCTTGCTGCAGCGGTGCTTT 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 GAATTCTCCAGCTGGCGTTTTTTAACATCCCCTTGATGGCTTACATGTGTTGGAGCTTGCTGCAGCGGTGCTTT 1592
Query 1045 GGTCACAACTTCAGGTCTCATCTCCATCAAAGAAAATACTTGAAAATTATGCCTGTTCACCTACTTATGCTACT 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 GGTCACAACTTCAGGTCTCATCTCCATCAAAGAAAATACTTGAAAATTATGCCTGTTCACCTACTTATGCTACT 1666
Query 1119 GCTGTACATCTGGCAGGTTTATTCCTGCTACTTTCTTTATGCAACATACGGCACCCTAGCTTTTTTATTCTCCC 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 GCTGTACATCTGGCAGGTTTATTCCTGCTACTTTCTTTATGCAACATACGGCACCCTAGCTTTTTTATTCTCCC 1740
Query 1193 CTTTGCGGACCTGGTTGACACTGCTGACACCTGTTCTCATTCGTTATGTGTGGACACTGAACTCCACCAAGTTT 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 CTTTGCGGACCTGGTTGACACTGCTGACACCTGTTCTCATTCGTTATGTGTGGACACTGAACTCCACCAAGTTT 1814
Query 1267 GGAATCTTCATGGTGCAGTTAAAAAGCCACCTGAGCTCC----------------------------------- 1305
|||||||||||||||||||||||||||||||||||||||
Sbjct 1815 GGAATCTTCATGGTGCAGTTAAAAAGCCACCTGAGCTCCTGAAGGCCATGTCTCACCACTGGCAGCTGGGCAGA 1888
Query 1306 -------------------------------------------------------------------------- 1305
Sbjct 1889 AGCCCAGCCTCTGTGTCTGTAGCCCAGGCCTCTACCCCAGTAGCAGGTGGAGGGCCAGGATTGGTGGGTGAGCT 1962
Query 1306 -------------------------------------------------------------------------- 1305
Sbjct 1963 TTAGGGAGCAGCTGCTCGTTTGGAGTCCTGGACGTTGGAGGGATTACCCACTACTGATACCTGCAGAATGGACT 2036
Query 1306 -------------------------------------------------------------------------- 1305
Sbjct 2037 GCAGAAAAGTCTCAAAAATAATGCCTTTATTCCTTCCCTCCCTAAGGAGGCAAAGAGTTGATTTACCTTTGTGA 2110
Query 1306 -------------------------------------------------------------------------- 1305
Sbjct 2111 AGAGAAAACCCTTATCTAGGACATCCACAGGGTAGAGGTTGGGTGTGTGTACGGGAGTGTCTGAGGCCCAGTGT 2184
Query 1306 -------------------------------------------------------------------------- 1305
Sbjct 2185 GTTTTTTAGGGTTACCCCATGTAAAGCACTTACCGCTGTGCTTGGAATTCAGCAGCTGTCAAAGGTGCAATTTC 2258
Query 1306 -------------------------------------------------------------------------- 1305
Sbjct 2259 AGGGGCAGGGAACCTTTGAGGATCTGGGCCCGACCCTCACTACCCCTGAGATATTAGTTCCCAGGCCTGTTTTC 2332
Query 1306 -------------------------------------------------------------------------- 1305
Sbjct 2333 CCACAGGATTGTGGGCTCTCTGCTTCCTTAGTCGGAAGTGTTTTCAACTAATCAAATAAATGAATGAATGATGA 2406
Query 1306 -------- 1305
Sbjct 2407 ATAAGAAA 2414
