Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12783
Subject:
NM_001308339.1
Aligned Length:
4048
Identities:
89
Gaps:
3950

Alignment

Query    1  ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATT  148
                                                        |..|||||.|.|.|||||||||.|||||  
Sbjct    1  --------------------------------------------ATGGGCACCCACCACCATGCCCAGCTAA--  28

Query  149  TTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG---  219
             |||||||||||||||||||||||.|||||||||||||||..|||||||||||||||||||||||||||||   
Sbjct   29  -TTTTTGTATTTTTAGTAGAGATGAGGTTTCACCATGTTGATCAGGCTGGTCTCGAACTCCTGACCTCAAGCAA  101

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  102  TTCACCTGCCTCGGCCTCCCGAAGTGCTGAGATTACAGTTGTGAGCCAACATGCCCAGCCAGGATTTTTGTACC  175

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  176  AATGGCTAGAAGCAGATCGTCATGGCAAGAGCCAAGGTGCTGCAAATACGACTTCAGGCGAAAATTTTGACCAG  249

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  250  AGTCCTTTGAGAAGAACATTCAAATCCAAAGTTCTCGCCCACTATCCTCAGAATATAGAATGGAACCCTTTTGA  323

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  324  TCAAGATGCGGTGAACATGTTGTGCATGCCTAAAGGGCTATCTTTCAGGACACAAACGGACAATAAAGACCCCC  397

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  398  AGTTTCACTCATTTATAATTACCAGGGAAGATGGTTCTCGCACCTATGGTTTTGTTCTCACTTTTTATGAAGAA  471

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  472  GTTACAAGTAAGCAAATCTGCACAGCAATGCAGACACTTTACCAGATGCACAACGCTGAGCATTACAGCAGTGT  545

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  546  GTATGCTTCATCTTCCTGCAGTATGGACTCATTGGCAAGTAGTCTTGATGAAGGAGATACAACTTCCCTTTTGA  619

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  620  AACTCCAGCGATACAACTCCTATGATATTAGCAGAGACACCCTGTATGTTTCAAAAAGTATATGCTTGATCACA  693

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  694  CCGTTACCATTCATGCAGGCCTGCAAGAAATTCCTTATCCAGCTTTACAAGGCTGTTACCTCACAGCAGCCACC  767

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  768  ACCCTTGCCACTTGAAAGCTATATCCACAATATTCTTTATGAAGTACCCCTTCCACCTCCAGGGAGGTCACTGA  841

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  842  AATTTTATGGTGTTTATGAACCTGTCATCTGCCAGAGGCCTGGGCCCAGTGAACTCCCCCTCTCTGATTACCCC  915

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  916  CTTCGGGAGGCATTTGAGCTCCTGGGATTAGAGAACCTGGTGCAGGTGTTTACCTGTGTTCTTTTAGAGATGCA  989

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  990  AATCCTTCTCTACTCACAAGATTATCAACGCCTGATGACTGTGGCAGAAGGCATCACCACACTTTTGTTCCCAT  1063

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1064  TTCAATGGCAACATGTTTATGTGCCCATTCTACCTGCTTCTCTGCTACATTTTCTTGATGCTCCTGTCCCTTAT  1137

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1138  CTGATGGGCCTTCAGTCAAAAGAAGGAACTGACCGTTCTAAACTAGAACTTCCTCAAGAGGCTAATTTGTGTTT  1211

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1212  TGTGGACATTGACAACCATTTTATTGAGTTGCCTGAAGAATTTCCACAGTTCCCCAATAAAGTGGATTTTATCC  1285

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1286  AAGAACTCTCTGAGGTTCTTGTTCAATTTGGGATCCCTCCTGAGGGCAGCCTACATTGCAGTGAGAGTACCAGC  1359

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1360  AAACTGAAGAATATGGTTCTGAAAGACTTGGTCAATGACAAAAAGAACGGCAATGTCTGTACTAATAACATCAG  1433

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1434  CATGTATGAGTTACTGAAGGGCAATGAAACCATAGCCCGCTTGCAGGCTCTGGCCAAGCGTACTGGTGTGGCTG  1507

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1508  TGGAAAAAATGGACCTCTCTGCTTCTCTGGGTGAAAAAGACAAGGATTTAAAACTGCATTGTGAAGAGGCAGAA  1581

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1582  CTAAGGGACTACCAGCTCAATGTACAGCTCCGAGAGGTCTTTGCTAACCGTTTTACACAGATGTTTGCAGATTA  1655

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1656  CGAAGCATTTGTCATTCAGACTGCCCAGGACATGGAATCCTGGCTGACCAACCGGGAACAGATGCAGAACTTTG  1729

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1730  ACAAAGCTTCCTTTCTGTCTGACCAGCCTGAGCCTTACCTGCCATTTCTTTCACGCTTCATTGAAACACAGATG  1803

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1804  TTTGCCACCTTTATTGATAATAAAATTATGTCTCAGTGGGAAGAGAAAGATCCTTTGCTTCGGGTCTTTGACAC  1877

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1878  TCGGATTGATAAGATAAGGCTGTATAATGTAAGGGCACCCACCTTGCGGACATCTATATATCAGAAATGCAGCA  1951

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1952  CTTTAAAAGAAGCAGCCCAATCAATTGAGCAGAGACTGATGAAAATGGATCACACTGCAATCCACCCACATCTA  2025

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2026  CTTGATATGAAAATTGGTCAAGGCAAATATGAGCAGGGGTTCTTTCCAAAGTTACAGTCCGATGTCTTGGCAAC  2099

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2100  AGGACCAACCAGTAACAATCGCTGGGTAAGTCGGAGTGCCACTGCACAGCGCAGGAAAGAACGCCTTCGCCAGC  2173

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2174  ATTCTGAGCATGTTGGGCTGGACAACGACTTGAGGGAGAAATATATGCAAGAGGCACGAAGTTTAGGAAAAAAC  2247

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2248  CTGAGGCAACCCAAACTGTCAGACCTCTCTCCTGCAGTTATTGCACAGACCAACTGTAAATTCGTAGAAGGCTT  2321

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2322  ATTAAAAGAATGTAGAATGAAGACAAAGCGCATGTTGGTGGAGAAGATGGGACATGAAGCGGTGGAACTTGGCC  2395

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2396  ATGGAGAAGCAAACATCACCGGCCTGGAGGAGAACACCTTGATCGCCAGCCTTTGTGACCTGCTGGAGAGGATA  2469

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2470  TGGAGCCATGGCTTGCAGGTCAAGCAGGGGAAGTCGGCTTTGTGGTCACATTTAATTCAATTTCAGGACAGAGA  2543

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2544  AGAGAAACAAGAGCACCTTGCAGAATCACCAGTTGCCCTCGGACCAGAAAGAAGAAAATCTGACTCAGGAGTTA  2617

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2618  TGTTGCCAACGCTCAGGGTCTCTCTTATTCAGGACATGAGGCATATTCAAAACATGAGTGAGATCAAGACTGAT  2691

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2692  GTTGGACGAGCTCGGGCGTGGATAAGACTGTCTCTAGAAAAGAAGCTCTTGTCCCAGCATCTTAAGCAGTTGCT  2765

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2766  TTCTAACCAACCACTCACCAAGAAGCTTTATAAGCGATATGCTTTTCTACGTTGCGAAGAAGAAAGAGAGCAGT  2839

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2840  TTCTTTACCACCTTCTTTCTCTCAATGCTGTGGACTATTTCTGCTTCACCAGTGTGTTCACCACTATCATGATT  2913

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2914  CCGTATAGGTCAGTGATCATCCCAATCAAAAAGCTGAGCAATGCAATAATCACATCAAACCCTTGGATCTGTGT  2987

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2988  ATCAGGAGAGCTGGGAGACACAGGAGTAATGCAGATTCCCAAAAACCTCCTCGAAATGACCTTTGAGTGCCAGA  3061

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3062  ACTTGGGGAAGCTGACCACTGTTCAGATTGGTCACGATAACTCAGGACTGTTAGCCAAATGGCTAGTGGATTGT  3135

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3136  GTCATGGTCAGAAATGAAATCACAGGACATACATACAGATTCCCATGTGGGCGGTGGCTGGGGAAAGGCATTGA  3209

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3210  TGATGGGAGCCTGGAGAGAATTCTTATTGGAGAGTTGATGACATCAGCATCAGATGAAGATCTAGTAAAGCAGT  3283

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3284  GTCGGACTCCACCCCAGCAGAAGTCACCCACCACGGCTAGGAGATTGAGCATCACTTCACTGACAGGAAAAAAC  3357

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3358  AACAAACCCAATGCTGGGCAGATACAAGAAGGAATTGGAGAAGCTGTGAACAATATTGTGAAACATTTTCATAA  3431

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3432  ACCTGAAAAAGAGAGAGGAAGCCTCACCGTGTTGCTGTGTGGAGAAAATGGCCTGGTTGCAGCCCTTGAGCAAG  3505

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3506  TTTTCCACCATGGGTTCAAATCTGCCCGCATCTTTCACAAGAATGTCTTCATCTGGGACTTCATAGAGAAAGTG  3579

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3580  GTTGCTTATTTTGAAACAACTGACCAGATTCTAGATAATGAAGATGATGTCCTTATTCAGAAATCATCCTGCAA  3653

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3654  AACCTTCTGCCACTACGTAAATGCTATTAATACTGCACCCAGGAACATTGGGAAGGATGGCAAATTCCAGATTT  3727

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3728  TAGTTTGCCTTGGAACAAGGGATCGCCTGCTCCCACAGTGGATTCCATTGTTAGCTGAGTGTCCTGCCATCACT  3801

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3802  CGAATGTATGAAGAGAGCGCTCTCCTGCGAGACCGCATGACTGTCAACTCCCTTATCCGAATTCTGCAGACCAT  3875

Query  220  ----------------------------------------------------  219
                                                                
Sbjct 3876  TCAGGACTTCACCATAGTCCTAGAAGGATCACTCATCAAAGGAGTGGATGTG  3927

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