Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- NR_001278.1
- Aligned Length:
- 3004
- Identities:
- 187
- Gaps:
- 2789
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTGGAACCATGGAGCTCAGCGTCCTCCTCTTCCTTGCACTCCTCACAGGCCTCTTGCTACTCCTGGTTCAGCGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CACCCTAACTCCCATGGCACCCTCCCACCAGGGCCCCGCCCTCTGCCCCTTTTGGGGAACCTTCTGCAGATGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAGAAGAGGCCTACTCAAATCCTTTCTGAGGTTCCGAGAGAAATATGGGGACGTCTTCACGGTACACCTGGGAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGAGGCCCGTGGTCATGCTGTGTGGAGTAGAGGCCATACGGGAGGCCCTGGTGGACAACGCTGAGGCCTTCTCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGCCGGGGAAAAATCGTCATCATGGACCCAGTCTACCAGGGATATGGCATGCTCTTTGCCAATGGAAACCGCTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAAGGTGCTTCGGCGATTCTCTGTGACCACCATGAGGGACTTCGGGATGGGAAAGCGGAGTGTGGAGGAGCGGA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TTCAGGACGAGGCTCAGTGTCTGATAGAGGAACTTCGGAAATCCAAGGGAGCCCTCGTGGACCCCACCTTCCTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TTCCATTCCATTACCGCCAACATCATCTGCTCCATCATCTTTGGAAAACGCTTCCACTACCAAGATCAAGAGTT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCTGAAGACGCTGAACTTGTTCTGCCAGAGTTTCTTACTCATCAGCTCTATATCCAGCCAGCTGTTTGAGCTCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TCTCTGGCTTCTTGAAATACTTTCCTGGGGCACACAGGCAAGTTTACAAAAACCTACAGGAAATCAATGCTTAC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATTGGCCACAGTGTGGAGAAGCACCGTGAAACCCTGGACCCCAGCGCCCCCAGGGACCTCATCGACACCTACCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCTCCACATGGAAAAAGAGAAATCCAACCCACACAGTGAATTCAGCCACCAGAACCTCATCATCAACACGCTCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CGCTCTTCTTTGCTGGCACTGAGACCACCAGCACCACTCTCCGCTACGGCTTCCTGCTCATGCTCAAATACCCT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CATGTCGCAGAGAGAGTCTACAAGGAGATTGAACAGGTGGTTGGCCCACATCGCCCTCCAGCGCTTGATGACCG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGCCAAAATGCCATACACAGAGGCAGTCATCCGTGAGATTCAGAGATTTGCTGACCTTCTCCCCATGGGTGTGC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCCACATTGTCACCCAACACACCAGCTTCTGAGGGTACACCATCCCCAAGGACACGGAAGTATTTCTCATCCTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGCACTGCTCTCCGTGACCCACACTACTTTGAAAAACCAGACGCCTTCAATCCTGACCACTTTCTGGATGCCAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGGGGCACTGAAAAAGAATGAAGCTTTTATCCCCTTCTCCTTAGGGAAGCGGATTTGTCTTGGTGAAGGCATTG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CCCGTGCGGAATTGTTCCTCTTCTTCACCACCATCCTCCAGAACTTCTCCGTGGCCAGCCCCGTGGCTCCTGAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GACATCGATCTGACACCCCAGGAGTGTGGTGTGGGCAAAATACCCCCAACATACCAGATCTGCTTCCTGCCCCG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CTGAAGGGGCTGAGGGAAGGGGGTCAAAGGATTCCAGGGTCATTCAGTGTCCCCACCTCTGTAGATAATGGCTC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TGACTCCCTGCAACTTCCTGCCTCTGAGAGACCTGCTGCAAGCCAGCTTCCTTCCCTTCCATGGCACCAGTTGT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CTGAGGTCGCAGTGCAAATGAGTGGAGGAGTGAGATTATTGAAAATTATAATATACAAAATTATATATATATAT 1702
Query 1 ------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCC 68
|..||||||||.||.||.||||||.||||||||.||||||.|||||||||||||||||||||||..||
Sbjct 1703 TTTGAGACAGAGTCTCACTCAGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCCACC 1776
Query 69 TCTCGAGG-TCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCG 141
|.||.|| |||||..|||||||||||||.||||||..||||||||||||||||||.....||.||||||||.|
Sbjct 1777 -CCCGGGGTTCAAGAAATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGATTACAGGTGTGTGCTACCATGCCTG 1849
Query 142 GCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCT 215
||||| |||||||||||||||||||||||||||||||||.||||||||||||||.||||.|||||||||.||
Sbjct 1850 GCTAA---TTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTGGCCAGGCTGATCTCAAACTCCTGAACT 1920
Query 216 CAAG---------------------------------------------------------------------- 219
||||
Sbjct 1921 CAAGTGATTCACCCACCTTAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGTCACCATGCCCGGCCATGTATA 1994
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1995 TATATAATTTTAAAAATTAAGATGAAATTCACATAAAATAAAATTAGCCATTTTAAAGTGTACAATTTAGTGGT 2068
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2069 GTGTGGTTCATTCACAAAGCTGTACAACCACCACCATCTAGTTCCAAACATTTTCTTTTTTTCTGAGACGGAGT 2142
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2143 CTCACTCTGTCACCCAGGTTCGAGTTCAGTGGTCTTGAACTCCTGATGTCAGGTGATTCTCCTAGTTCCAAATG 2216
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2217 TTTTCATTATCTCCCCCCAACAAAACCCATACCTATCAAGCTGTCACTCCCCATACCCCATTCTCTTTTTCATC 2290
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2291 TCAGCCCCTGTCAATCTGGTTTTTGTCCTTATGGACTTACCAATTCTGAATATTTCCTATAAACAGAATCACAC 2364
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2365 AATATTTGATTTTTTTTTTAAAACTAAGCCTTGCTCTGTCTCCCAGGCTGGAGTGCTGTGGCGTGATTTTGGTT 2438
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2439 CACTGCAACCTCCGCCTTCCAAGTTCAAGAGATTCTCCTGCCTCAGCTTCCAAGTAGCTGGGATTACAGGCATG 2512
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2513 TGGTACCACGCCTGGCTAATTTTCTTGTATTTTTAGTAGGGACATGTTGGCCAGGCTGGTTGTGAGCTCCTGGC 2586
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2587 CTCAGGTGATCCACACGCCTCAGTGTCCCAGAGTGCTGATATTACAGGCGTAATATGTGATCTTTTGTGTCTGG 2660
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2661 TTCCTTTCACGTTGAACGCTATTTTTGAGGTTCGTGCCTGTTGTAGACCACAGTCACACACTGCTGTAGTCTTC 2734
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2735 CCCCATCCTCATTCCCAGCTGCCTCCTCCTACTGTTTCCCTCTATCAAAAAGCCTCCTTGGCGCAGGTTCCCTG 2808
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2809 AGCTGTGGGATTCTGCACTGGTGCTTTGGATTCCCTGATATGTTCCTTCAAATCCACTGAGAATTAAATAAACA 2882
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2883 TCGCTAAAGCATGACCTCCCCACGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2956
Query 220 -------------------------------------------- 219
Sbjct 2957 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3000
