Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- NR_033181.2
- Aligned Length:
- 6116
- Identities:
- 190
- Gaps:
- 5898
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTCCTCCGACTTCCGGACATCTCCCTGGGAGTCGCGCAGAGTGGAGTCAAAGGCAACCAGTGCTCGCTGCGGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTCTGGGGATCGGGACCGCGGCGGCGGCCCGCGAGCGGGATGTTCCGGGGCTTGAGCAGTTGGTTGGGCTTGCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCAGCCGGTGGCAGGCGGTGGGCAGCCCAATGGAGATGCTCCACCCGAGCAGCCGTCCGAGACGGTGGCTGAGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTGCGGAGGAGGAGCTGCAGCAAGCGGGAGACCAGGAGCTCCTCCACCAGGCCAAAGACTTCGGCAATAACTGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATCAGTTGCTGAAACAGCACAAACAATAAAGAAATCCGTAGAAGAAGGAAAAATAGATGGCATCATTGACAAGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAATTATAGGAGATTTTCAGAAGGAACAGAAAAAATTTGTTGAAGAGCAACATACAAAGAAGTCAGAAGCAGCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGCCCCCATGGGTTGACACTAACGATGAAGAAACAATTCAACAACAAATTTTGGCCTTATCAGCTGACAAGAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAATTTCCTTCGTGACCCTCCGGCTGGCGTGCAATTTAATTTCGACTTTGATCAGATGTACCCCGTGGCCCTGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCATGCTCCAGGAGGATGAGCTGCTAAGCAAGATGAGATTTGCCCTCGTTCCTAAACTTGTGAAGGAAGAAGTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTCTGGAGGAACTACTTTTACCGCGTCTCCCTGATTAAGCAGTCAGCCCAGCTCACGGCCCTGGCTGCCCAACA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCAGGCCGCAGGGAAGGAGGAGAAGAGCAATGGCAGAGAGCAAGATTTGCCGCTGGCAGAGGCAGTACGGCCCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAACGCCACCCGTTGTAATCAAATCTCAGCTTAAAACTCAAGAGGATGAGGAAGAAATTTCTACTAGCCCAGGT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTTTCTGAGTTTGTCAGTGATGCCTTCGATGCCTGTAACCTAAATCAGGAAGATCTAAGGAAAGAAATGGAGCA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ACTAGTGCTTGACAAAAAGCAAGAGGAGACAGCCGTACTGGAAGAGGATTCTGCAGATTGGGAAAAAGAACTGC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGCAGGAACTTCAAGAATATGAAGTGGTGACAGAATCTGAAAAACGAGATGAAAACTGGGATAAGGAAATAGAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAAATGCTTCAAGAGGAAAATTAGCTGTTCCTGAAATAGAAGAATAATCCTTAACAGTCTGCAAACTGACATTA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AATTCTAGATGTTGACAATTACTGAATCAGAAGGCATGAAAGAGTATAATTTTATGAAATTCAAAATTATTCTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTTTCAAGTTGAAACTTGCCTCTTCTACTTTAAAAAAGTATATAGAACAGTTACTTCTAATAATCAGAAAGAGA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGTTTTATAGAACATTTCTTTAATATAAAGTTAGAGATGTCTTCATAGGCAGTATGGCTATCTTTGCCACAGAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ACATAAGTAAAATTTTAGAGTTCTGTTTTCCATGAGGTCAAAAATATAATTTATTCCTCAGTCATGGTTTTCTA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AATATCTGTACTCCACATTCCATTTTAATTGATATGAGGGTGTTAAAGTACCTACTTAATGGGTTGATTACTAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CAAAATGACCAAATTATACCAAAGAACTTAAGAGGAAGCACTTTCAGAACTATTCACTTGCCAGGTATTTTCTA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AAATTCCACCTGAAAGCCAAAAGATAAAATAAATAAGTTGATTTTAATGATATAAGCATCACACAATTTTACAT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TAAGAAATACTGTGCAGGCCATGCGTGGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GATCACCGGAGGTCAGGAGTTCGAGACCAGCCTTGCCAACATAGTGAAACCCTGTCTCTACTAAAAATACAAAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ATTAGCCGGGCATGGTGGCAGGCACCTGTAATCCCAGCTACTAGGGAGGCTTTTGAACCCAGGAGGCAGAGGTT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GCAGCGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGTGATAGAGTGAGATTCAGTCTCAAAAAAAAAAAAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AAAAAAAGCTGTGCGAAAATATTTGTTTTTCTCTGGGGCCTTTTCTTTCTTTTCTTTTTAAACTATACCAGAAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTTTACATCACAGTTTTTATACAAAGTGGGACCTTCCATACTTTTTGTATTACAATAACCTTCAGAAGCCCATT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CCCCTTAAAGTCTGTTGTTCTTGTTTTAATCATCACCACATATAAATGTTTTAGCTTTGTCTTAAACTGTGAGT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CTTCATAAAATTGTGTTCCTCCGAGTTCACCTTCTAGGACTTTATTGATTAATCCTTCTCTTTCTGCTATACCA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GCAGACACATATTCATAGAATATGATTATTTTTAAAGAACAAGGTGAGGAGGCTGAGGCAGGAGAATTGCTTGA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACCTGGGAGATGGAGGTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGAGACT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CCGTCTCAAAAATGAATGAATGAATGAATGAATGAATGAACGAACGAACAAGGTGGTTTAATGTCAGAAAACTT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CCTAAGCATTTGCTCCCCAAACCTTTCATGTTTTTCAAGAAGCCTTTATTACATAAAGGGGAATAGAATTAAAA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TGTTTCTTTATAAGAAAAATATACATATTTGTGTTCTTGGCCCCATTAAAACTAGTCAGTAGTCCTTTGGCAAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GATATAGTCAACAAGAGAACTGGGTATGAGTCCAGGCATTACTCCTGTTCATAGTTGTGGATGCATGTGTCTGA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GCCAGACTGTCTCAACTGGAGTCTCTTGGGTTATAGCAGTAAACCCGTGTATTCCATGAAACCACTGGGCCCAT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CATCAAAAGGTTTCCACTTGTGGTGCCACAGTTGCTTATTACTGAGTTTGGGTTCCAAGATGACTGGCAACTTC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TGAAATAATCTCATTGAAGGAAAGAGTTTCATTTTTTTTTTAAAAGAGTTTGCTGGAGGAAAAGAAGCATGTTA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AATGTTTTTAAGCAGCTAAAAGTCCTAGATGGAAGCATATCAGGATGTGTCGGTGCTTGGCTCTTAGTGAATGC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 ACTAAAATTCTTATTGATAAATGTTGAATAAACACACACAAAAAAGTATCAGAGAAAGAGAAAAACCCTACAAT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GGCAATAGAGGTGTGTGACAGTTATTGCTATCAATTTTACATAATATCTCATTTAAAAACAACCTAATTATGCA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TTGCCTGTGAAAATAAAAGGATAAAATAAGATTTTGTACATACTGTAAGAATACAGTTGTGCTGTATTTTTATG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GATTCATCAAGGAGTAAAATGTTCTGCTTTAGTAAATTATATAGGTAACTGAAGTGTTATTCCTTTAAAGAGCA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 AAATAATTTATCACCATGTTTGGTGGAAAATTTCTAAGTATTTATTACATGCCTAGGGGTTAGCCAACAAGATA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TACCAAGCATGAAAACCTGTAAAACTTAATAAAATGCTAAAATATGAACATCACACTATGGAGATTATGCCTCA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CTACTCAAAGAGTGTGGCTCAGGAACCAGTGTAGCTTGGCCATGCCCTGGCAGTATGTTGGAAATGCCTGCCCC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 AGACCAGTTGATGTTACTAAGAACGCCCAGGGGATGAGAATGGACTTTATTTACAGTTTGGGAAGCACTGGTCT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 AATATGCTCTCAGGGAAGCTGAGGTTTCTACTGCTTTTTACTTTTTACCCTTCCACTAGATGTCCTTTGCAGCA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GTGTTTTTCTAGTTGGCATTACAGGTGTCTCCTCTGAGGTTCCAGTTATTTCTATACTACCAAAATTAAAAAGA 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 CCCAAGGGCTGGGCATGGTGGTTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATTGCTTGA 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 GCTCAGGAGTTCAAGACCAGCCTGGGCAACATAGGGAGACCCCTGCCTCTACAAAAATACAAATGAGCCAGGTG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TGGTAGCCCACACCTGTGGTCCTAGCTACTTGGAAGGCTGAGGCAGGAGGATCGCTTGAGCCCAGGAGATCCAG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 GCTGCAGTAAGCCATGATCATGCCACTGCACTTCAGCCTGGGTGACAGAGACTCTGTTTCAAAAAAGGGAGGGG 4070
Query 1 ------------------------------------------------------------------------AT 2
.|
Sbjct 4071 GGGCAAGTTTTTAGGGGGATGAGAAATATTCTTGGTAAATCGGGCATTTCTTTTTTTGTTTGTTTTTTTTTCTT 4144
Query 3 GGAG------TCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTC 70
|||| |||...||||||.|||||.||||||||.||||||.|||||||.||||||.||||||||.|||||
Sbjct 4145 GGAGACAGAATCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCTTGATCTCAGCTCACGGCAACCTCCGCCTC 4218
Query 71 TCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCT 144
.|.||.||||||||||||||..||||.||||||.|||||||||||||||||||||..|||.|||||||||.|||
Sbjct 4219 CCAAGTTCAAGCGATTCTCCCACCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAACCGCCACCATGCCCAGCT 4292
Query 145 AATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAA 218
|| |||||||||||||||||.|||||||||||||||||.|||||||||||||||||||.|.|||||||.|||||
Sbjct 4293 AA-TTTTTTTGTATTTTTAGCAGAGATGGGGTTTCACCGTGTTGGCCAGGCTGGTCTCAAGCTCCTGATCTCAA 4365
Query 219 G------------------------------------------------------------------------- 219
.
Sbjct 4366 ATGATCCGCACGCCTTGACCTCCCAAAGTGTTGGGATTACAGGCATGAGCCACAGCCTTAATTGGTAATTTTTG 4439
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4440 AAAAAAAAACTAGAGAAACATTGTTTCAGAGATAAAGCAGCAATTACACTTGTACTCCCAGTGATTTAAGATGC 4513
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4514 ACTATTGTAATCAAGATGATTTGCTTTAATCAAAATATTGTTAAAAATAGGATTTCAGGACATTTAAAAGGTTT 4587
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4588 CAGCAGAAATCTTATGATTATGTCTGACTTGCAGTATTTTATTTGCCTCTTTGACGGCTTTTTTTTTTTTTTTT 4661
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4662 TTTTTGAGACAGAGTCTCACACTGTTGCCTGGGCTGGAATGCAATGGCGCAGTCTCAGCTCACTGCAAACCTCC 4735
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4736 GGCTCCCGGGTTCAGGCAGTTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGATTATAGGCATGTGCCACCACACC 4809
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4810 CGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCGCCATGTTGGTCAGGCTGGTCTTGAACTCCCAACCTC 4883
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4884 AGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCAACCTTAATGGC 4957
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4958 TTTTTGGTATTAAAAACCAGGACTCTGAATGTGCATCAATAATTCAAATAATTTTATATAGTTACTCTTTCTAG 5031
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5032 TAATAGATACCCCCCTCCATTTTTAAGTAAAGATAAACATTTTTTAATTAGGAAAATTAGGCACATTTAATTTT 5105
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5106 AGCAAATTTAGTTTTTCAACTTTTTTTTTTTTCTTTTTTTTTTTTTTTGAGATGGAGGCTCACTCTGTTGCCCT 5179
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5180 GGCTGGAGTGCAGTGGCCGCAACCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGTGATTCTCCTGCCTC 5253
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5254 AGCCTCCCGAGTAGCTGGGATTACAGGCGTGTGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACGG 5327
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5328 GGTTTCACCATGTTGGCCAGGCTGGTCTTGAACGACTGGCCTCAGGTGATCCGCCCACCTCGGCCTCTCAAAGT 5401
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5402 GCTGGGATTACAGGCATGAGCCACCATGCCCAGCCAGTTTTTCAACTTTTAAAAATAAAAGTGGTAGAATTTTT 5475
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5476 TTTTTTCTTTTTGAGACAGGGTCTTGCTCTGTCACTCAGGCTAGAGTGCAGTGGTGGGATCTCAGCTCACTGCA 5549
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5550 GCCTCCGCCTCCCAGGCTTAAGGGATCCTCCCTCCTCAGCCTCCCGAGTAGCTGGGACCACAGGCATGCACCAC 5623
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5624 CACGCCTGGCTAATTTTTGTATTTTTTGTAGAGATGGGTGTCTCCCCATGTTGCTCAGGCTGTTCTTGAACTTC 5697
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5698 TGAGCTCAGGTGATCTATCTGCCTCGGCCTTCCAAAGTGCTGGGATTACAGGCATGATGAGCCACTGCACCTGG 5771
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5772 CCAAAAGTGGCAGAAATTTTGATATGGTTTATAATCAGTTTTATTGTGGGGAAGATGGGCCATTTTAATGAATG 5845
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5846 ATTATTTCTATTGGCTAAACTACCGAGTCACGACATGACAAATACACATGAAGCTTTAATCACATGCAGTTATA 5919
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5920 TACTTCTCACAAATCATCAAATTATTTATCTGGTCTTCACACTAAGGGATTTACTTAGATAAGCCATCGATGAT 5993
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5994 TTCAGTTGTTAAAAGTGTGGCTTTTTAAACAGCATTTATTCAGTGCATCCTGATTTATTTCAAAATGAAAAATT 6067
Query 220 ------------------------------------------------ 219
Sbjct 6068 GTTACCTTTTTTTCTGAATAAATAAAGCTTACTTTTAGTGGCAAGGTA 6115
