Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- NR_037928.1
- Aligned Length:
- 6290
- Identities:
- 188
- Gaps:
- 6076
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCCGCGATCGCTGCTTTCAGCTGGGCAACAGCACAGGGCGGTCCTGCGCATCCGGGGGGCTGCGCTCCCAGACC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGTGGCTGGGGAGTAGGTTGCAGGGGTGTCACTGTGTCAGGGGAGGAGGAGGAGGAGGAGGAAGAAGAGGTAGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGCAAGGTCGCGGTCTGAGGTTCCGGTGCTCGCCGCCGCCCAGCTCCCAGCCGAGGCTTTCTCAACCGCGTCAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TAAAAGGCCGCCCCGACCCGCCCCCGCGCCCCGCAGCCCTGCCGGACACCCCGGGCTGCAGCTGAGCGGGCGCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GACGGGCCGAGGCGGGCGCCGGGCGCGCAGGGACCGAGGGACCGAGTGCTCCCCATGAGCGCACGTGGGCCGGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CGGTCCGCAAGCCCGGCTGAGAGCGCGCCATGGGGCAGGCGGGCTGCAAGGGGCTCTGCCTGTCGCTGTTCGAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TACAAGACCGAGAAGTATGTCATCGCCAAGAACAAGAAGGTGGGCCTGCTGTACCGGCTGCTGCAGGCCTCCAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCTGGCGTACCTGGTCGTATGGGTGTTCCTGATAAAGAAGGGTTACCAAGACGTCGACACCTCCCTGCAGAGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTGTCATCACCAAAGTCAAGGGCGTGGCCTTCACCAACACCTCGGATCTTGGGCAGCGGATCTGGGATGTCGCC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GACTACGTCATTCCAGCCCAGGGAGAGAACGTCTTTTTTGTGGTCACCAACCTGATTGTGACCCCCAACCAGCG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCAGAACGTCTGTGCTGAGAATGAAGGCATTCCTGATGGCGCGTGCTCCAAGGACAGCGACTGCCACGCTGGGG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGCGGTTACAGCTGGAAACGGAGTGAAGACCGGCCGCTGCCTGCGGAGAGAGAACTTGGCCAGGGGCACCTGT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GAGATCTTTGCCTGGTGCCCGTTGGAGACAAGCTCCAGGCCGGAGGAGCCATTCCTGAAGGAGGCCGAAGACTT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CACCATTTTCATAAAGAACCACATCCGTTTCCCCAAATTCAACTTCTCCAAAAGCAATGTGATGGACGTCAAGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ACAGATCTTTCCTGAAATCATGCCACTTTGGCCCCAAGAACCACTACTGCCCCATCTTCCGACTGGGCTCCGTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATCCGCTGGGCCGGGAGCGACTTCCAGGATATAGCCCTGGAGGGTGGCGTGATAGGAATTAATATTGAATGGAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTGTGATCTTGATAAAGCTGCCTCTGAGTGCCACCCTCACTATTCTTTTAGCCGTCTGGACAATAAACTTTCAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGTCTGTCTCCTCCGGGTACAACTTCAGATTTGCCAGATATTACCGAGACGCAGCCGGGGTGGAGTTCCGCACC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTGATGAAAGCCTACGGGATCCGCTTTGACGTGATGGTGAACGGCAAGGGTGCTTTCTTCTGCGACCTGGTACT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CATCTACCTCATCAAAAAGAGAGAGTTTTACCGTGACAAGAAGTACGAGGAAGTGAGGGGCCTAGAAGACAGTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CCCAGGAGGCCGAGGACGAGGCATCGGGGCTGGGGCTATCTGAGCAGCTCACATCTGGGCCAGGGCTGCTGGGG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ATGCCGGAGCAGCAGGAGCTGCAGGAGCCACCCGAGGCGAAGCGTGGAAGCAGCAGTCAGAAGGGGAACGGATC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGTGTGCCCACAGCTCCTGGAGCCCCACAGGCTGAGGACTCCCTCTGCTTCTCCCTTACACCAGGAATGAACCT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTCCTTCCCACTCAGAGGAGGTTCTGAGAGGACTGAGGTGGGCAAACCACTGAGGATCTTCAGTGGGGGCAGAG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AAAGGGCTCACTGAGATGGGGGGCAACGCTATGGCCTCAGCTTCTCCTTGGCGTCGTGTGCATGTGTTCCTGAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GCCGAAACGGAATTTAACAGGTCTGGGTCCCAGATCCATTTCCATGACTGGCCATGGGCTATCTATGATCTGTC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AAAAGGGGACTTGGATTCAAGCTCTCAGATCCCCTTCCAATCTAAAACAGATTCTTTTTTTAAAAAAAATCCAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATGTGATTACGTCACTTCAGACTAAAAACTTCCAAAGGCTTCCCCCATTTGCTCTGAGGATCAAGGCCAGGGCA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AATGGGAGCTCACTGCAGCCTCAACCTCCTGGGCTCAAGTGATCTTGATCTTCCCATTCCAGCCTCCTGAGTAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CTGGACTACAGGCGCATGTCCCCACACCCATTACTGCCCTCCATGATCTGGTCTGGGTCTACCCTGTGGCCTCT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TCTCTCACTCTCTAAATACAGTCACATTCCTTCCTGCCCAATGGCCTGGAAACATGCGCTTTCCTGAAGGTAAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TCCTTCCCCACACTTGCCTATGTTATTCAACTTTTGGGTTTCAGATGTAATGTTATTTCCTCAGAGAAGACTTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTTGACCTCCATATACCCCAACTTGGGCTAGGTCTGCTATGTCCTCTTCATAGTACTCACCATGATTTAAGTAT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTCTGAAGTTAGGTGATGCTGGTTTCCCCAGTTAACCATAAATCCAATGAGCACCATCATTTTCATTACTGTAA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTTCTTTTTTTTTTAGACAGGGTCTCGCTGTTGCCTAGGTTGGAGTGTAGTGGCAAAATCGTGGCTTACTGTGG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CCTCAACCTCCCGGGCCCAGGTGATCCTGATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACAT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GCCACCACATCTGGCTAATTAAATGTTTTTTTGTAGAGATGGGCATCTCACTATGTTGCCCAGGCTGGTCTTGA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TCTCCTGGGCTCAAGCCTTGGCCTCCCAAAGTGCTGAGATCACAGCAGGAGCCACTACACTCAGGCAATTACCG 2812
Query 1 --------------------------------------------------------------ATGGAGTCTCAT 12
|.|||||.||..
Sbjct 2813 TCATTCTAATGCAATATTTATTCCTCAATTAAACAAATGCATTTTATTCTTTTTTTTTTGAGAGGGAGTTTCGC 2886
Query 13 TC-TGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGG-TCAAGCGA 84
|| |||.||||||.|.||||||.|.|||||||||||||||||||.|||||||||||||| |.||| |||||.||
Sbjct 2887 TCTTGTTGCCCAGGCCGGAGTGCAATGGCATGATCTCGGCTCACCGCAACCTCTGCCTC-CCAGGTTCAAGAGA 2959
Query 85 TTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTAT 158
||||||||||||.||||.|..|||||||||||||||||||....||.||||..||||||||| ||||||||
Sbjct 2960 TTCTCCTGCCTCAGCCTTCCTAGTAGCTGGGATTACAGGCCTGTGCCACCACACCCGGCTAA----TTTTGTAT 3029
Query 159 TTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG------------- 219
|||||||||||||||||||||.|||||||||.|||||||||||||||||||||||||||.|
Sbjct 3030 TTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCTGCCCACC 3103
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3104 TCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCTCGGCCACAAATGCGTTTTATTCTAAAATA 3177
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3178 ACCCTCCTGACAAGAAAGGATCATGGATTAACACATGGAGGTGTTTACACCCTAAACCTGCCCAAAGTTCAACT 3251
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3252 TCAATGTCCAAACAATTTTTGTGTTTTTTTTGAGATGGAATCTTGCTGTCACCCAGGCTGGAGTGCAGTGGTAT 3325
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3326 GATCTTGGCTCACTGCAACCTCCACCTCCAGGGTTCAAGCGATTCTCCTACCTCAGCCACCCAAGTAGCTGGGA 3399
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3400 TTACAGGTGCCCACCACCACGCCTGGCTAATTTTTGCATCTTATTTTTAGTAGAGATGGGGTTTCGCCATGTTG 3473
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3474 GCCAGGCTTGTCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCGTCGGACTCCCAAAGTGCTAGGATTACAGG 3547
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3548 CGTGAGCCACTGTGCCCAGCCTAAATGTCCAAACAATGTTTAATCTTCCCTAGACATATTCTAAAAAATACAGC 3621
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3622 TTGACTTTATTTTTTCTTATGGAAAGGACTGTCACTAAATGAAATGGAACTAAAATGACACCATATATACCTGA 3695
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3696 AAGTAGTGGTTAGTGGGAGGGAACGCTGGCCTGTGAAAGGTACACCCAGCAAACATATCAAGAGCAAATTAAGA 3769
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3770 GACCTGCATTTGAATCCTGGCTCTGTCTCTTCCTAGCTGTATCTCCTCTGGGAGAAGTATTTAACCTCTCTGAG 3843
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3844 CCTCAGGTTCCTTACGAGGGAGCTAACAATAACATCTACCCTGTAAGGTTATTGCTAAAATTAAATGAGAGGAT 3917
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3918 CGGTGTAGAGTAGAAGTCACAATGCCAGCATATAGGGAACTCTTTTTTTTTTTTTTTTCCCTGAGAGACAGACG 3991
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3992 GAGTCTTGCTCCATCACCCAGGCTGGAATGCAGTGGCACGATCTCGGCTCGCTGCAACCTCTGCCTCCAGGGTT 4065
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4066 CAAGCGATTCTCTTTCCTCAGCCTCCCGAGTACCTGGCATTGCAGGCGCGCGCCACCACACCCGGCTAATATTT 4139
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4140 ATATTTTTAGTAGAGACGGAGTTTTGCCATGTTGGCCAGGTTGGTCTTGAACTCCTGACCTCAGGTGATCCGCC 4213
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4214 CACCTCGGCCTCCCAAAGTGCTGGGATTACAGACATGAGCCACCGTGCCCGGCCCAGGGAGCTCTTAATACATA 4287
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4288 TTAACTGTTACTGCTTCTTAGGATGTTAATAAGTTCTTTCCTTATGTAGGCCCTTAGGGCCCGTTTCTGAATGG 4361
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4362 CCTATGTGTAAATACAAGGACTTAACACAAGGCTATGGCCCATTCCTTGCTCTCCAGGAGTCAAATCTCGGCGA 4435
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4436 TTTTGCATCAGTGGCAGCCTAAGCGTTACAGCAGGAAAGAACTCCACAAAGTGTCTCACGCTTCATTTAATCTG 4509
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4510 AAGAATATTACAGGCTCTCCGTCTTCAGATATAAATTATTTATAACGTTACAGAACAAGCAGCGAATTCAACCA 4583
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4584 CTTAAGAACTAAGGAAGTCTACATGGTGTTAATTGCTGGCCACAGTCCTCCCGATCTGGTTTTTTAAAAAAGTC 4657
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4658 CCCCGGGCCCCCATTTCAGTAGACGTGCACCATGCCGTAGAGGAACGTCCAGAACAGGACGTAGGTGAAGAGGC 4731
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4732 CCCCGATGAGGCCTCCTGTAAAGAGAGGTCTCCGTGATTTGAAATATTTGTTCCACCTCCTTCCCGCCTTGAGA 4805
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4806 ATGAGGAGCAGGGAGAGCAGGACGGAGGCGAGCAGGTAGAAGATGAAGCCGTAGAGGCCGGTGAGGCCGAGGAT 4879
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4880 GCCGGCCGTGGCCCCCGACAGCGCTGACACCGAGGTCCGGCAATAATCCAGGACGGCGGCGTTGCCCCGCACGG 4953
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4954 CCGCCTCGCTGATGAACGGCGGCCCTTCCCGCTTGGCCACCACCGCGGCCATCGCACCAGCCCGGGCTCGGCCT 5027
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5028 CTCGCTTTCTCGCGGAACAACGCGGAGCTGCGGAGAAAACCAAGTTACAAGTGGCGCCCGGAGCTCGCAAAGAG 5101
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5102 TTGAAATTCACAAGCTGCGTCAAGGTGAGAACTTAATCCTGGGTTTCAGCATTGGAGGTGGAATCGACCAGGAT 5175
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5176 CCTTCCCAGAATCCCTTCTCTGAAGACAAGACGGACAAGGGTATTTATGTCACACGGGTGTCTGAAGGAGGCCC 5249
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5250 TGCTGAAATCGCTGGGCTGCAGATTGGAGACAAGATCATGCAGGTGAACGGCTGGGACATGACCATGGTCACAC 5323
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5324 ACGACCAGGCCCGCAAGCGGCTCACCAAGCGCTCGGAGGAGGTGGTGCGTCTGCTGGTGACGCGGCAGTCGCTG 5397
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5398 CAGAAGGCCGTGCAGCAGTCCATGCTGTCCTAGCAGCCACCACCATCTGCGACTCCTGCCTGCCGCCTCTCTGT 5471
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5472 ACAGTAACGCCACTTCCACACTCTGTCCCCATCTGGCTTCTGCTGACCGCTGGGCCCCAGCTCAGAAGGGCTAT 5545
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5546 AGCTGGTCCCAGAGGCCTGGCCTGGCCTTCCTTCCCTTCTCCCATCCCTGGCCTGGGGCCTCTGGGACCGGCTT 5619
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5620 TCTCTCCTGGACACCGAGGATTGGAAATAAGGGCCTGGAGCTGAGTAGTAGCCAGTCTGCTGTGACCACAGGCT 5693
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5694 CAGGTCCGACCCTGCTGCTTGGCCACAGCAGTGGCTGGGCAAGTGGGAACCACTATCTCTTGGGAGCCCCCAAA 5767
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5768 AGCTGGGAAATGCTGGAGGAACCAGGCCTTTCCCGCTTTTGCCTGGCTGCAGGGTTCGGCTCCGCCCCTGCCCC 5841
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5842 CCAGCCCTCGTGTGTCCACACCGCAGTGCCTCTGCCCCTCGGGGGACTGGACACACATCCTGCCAGAGGCGCTA 5915
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5916 CGAAGCTTTGCCCAGATGAAGCCAGGTGGGCTCCGCGTTCACTCCCACTCTCCCGAGGGGTGCTGGCCTCCCCA 5989
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5990 GGGTTTGCCTTCTTACGGATTTAGACGAGGTTCGAGGCTCACCTATCAGGGCAGCTCTCAGGATTGTCATTTTC 6063
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6064 CTCTTTGCCTGTGGGTTTAACTTTTGTATTTTTTTAATCACAAGTTTGATACAAAATGTTTTTATCGTACTCTT 6137
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6138 TGGAGATGCCCATTCTACTTTTGAATTTAGCTTTTACTAATTCGCATCTGGAAGCTCAGCAAGTGCACAAGCCT 6211
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6212 TACTTTGGTTACCGTGGAAACCACTGCCGCCCCTCCCCGATGTGGTGCGCTCAATAAAAATGCTGGAATTCACA 6285
