Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12783
Subject:
NR_049794.1
Aligned Length:
4390
Identities:
189
Gaps:
4173

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTATCAACTCCATCTGTCACAAAAATTAAGGCTAAATCTCCTCTCCAGAAGCAGAGGGAGCCGGGGCTCCGACG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGCTCAGCGTCGGGCTGTCTGCCTCTCCCTAGAGGCCAAGTGAATTTGAAATGGCAAAAGTCACAGCCGGAGGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCAGCACTAGGAGATTCCTCCGGCTGCGGGAAATCTTCCTGTACCTGCTGAAGCTGCTGCGTTCCTCAGAGGCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTTGGTCTGCCGTGGGAAGCTGCACCTCTGCAGTCCCCAAAACCAAAATCAAACCTTAAAAGAGCCAGACTGAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AAGCCAGTCACCACGTAAGACATCTGGACCACCTTCAGACTCGCATGCTGTGAGGAAGCCCATGCTTACTATGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GTAGAGGATACATGGAGAAGGAAAGAGATGCCTGGCCAGCTCCCTGCTGTTTCAGCCATGCAGAGGTGCTGAGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGCTAATTGGAGGGGATAGTATGAGCCTCCAAAGATTAGGGAAGAAAATTGCAGTTGAAGAAAACTTGCTTTGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TTCAATGCAAAAATAATGGGATGAATGGCATGCTGAAATATCATATGACTTACGAAAATGATGAATGGTTTATT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GAATCTACATATGTGGAACCCATGAATGGGAGTCGGAGAAGGGGGCAACTGTATACGCAAAAAGCTATCATAAT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGCCAAAATAGTGATAACAATGTTGAAACACTACTGGGATTACTACTGTTAATGACTACCAGTGATCAAGCACC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TCCCCTGCCCCAGTGTTTGCCTGCCTTGTTTGAAGACACGAAAAAATGTACACAAAATGATTTAGAACTGTTGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ACTTTTCAGAAAATAATTTAAAATCATCTACCTCATAACTAAAGGACACTGAATTGGAGCCAGCTGATGTAAGG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AGCTTACCTTGGTTGCCACCTTCTGGTCTCTGTTTGAGGAACAACTGCATGTGATTAAGGATGAAGAAACTGAG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  ACCCCAAGAATTTAAGTAATTTGTTCAAGGCAACACACTGCTATGTGGTAGAACTACAAATTGAGCCCAAATAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TCCAGCTTCAGATACTATGCAAAGGTATCCTAGGTGTGGGGGTGATAACCTGGTGACAATCCCTTCTCAGAAGG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AAAACAGGTCCCATCTACAGAGGTGAAGCAGAGTGTGGAACTGAAAAACTCAATGGAAGAATGGCTATTAAGAT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TTAGGACGGCTGGGAAATAATAAAGTAATAATAATAATACTAGGTATTGACGTGTGCTACATGCCAGGCCTTGG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GTGACATTTGGATTGATTCCCATTTTCTTTACTTTTCAGCAGTGGGGTCTTTCACCTTTCAAGCTCTGCCTGAG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AAGTCAACATGGTGGCATTTGGCTAGGTTCTTTTAGGCAACCAATTGTTTTAACATGATTTGTTGAAAAGCCTA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TTCTCTCTTTCATTGAACTATAATGCTAGCTCTGTCATAAATCAAATTTTCATTTGATTTATGATATGAAAATT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  ATATGCATTTGATTGATATGCATTTTTTCTCCAATGATACTCAACTGTCTTAATTATATAATTTTGTAGTAATT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CTTGGTATCTAATTAGGCAAATACCCACTCCCAACCCTGTTTCTTTTGTTTTTAAATCCAGGGGTGTTTTGGAT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATTCTCGTTCATTTGTGCTTCCACCTACATTTTTCAGTTAACTTGTCAGGTACGAAAAAATAAAAGGCAAAATT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TTTTATCCTTAAATCAATTTGGGCAAGTTTGCAGTTTTTTCTTGTATTGTAACTTCCAATCTATGAATATGATC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TATTTTTTCACCAATTTATGGCTTCTTCCAATAACATTTTATAATTGTCTTTTTAGAGGCCTTATCTTTTGTTT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AGATTCATATCTAGGTATTTAATATTTTTGATGCTGTTATAAATGGTATTTTTAAAAATATATACATTTTTAAC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TATTTCACATAGAAAACTTTAATGGATTTTTAAAATGTAGATTTGTATTCAGTAAACCTGTTAAAATCTCTTAG  1998

Query    1  ---------------------------------------------------------ATGGAGTCTCATTC-TG  16
                                                                     |.|||||.||..|| ||
Sbjct 1999  AATGTCTAAGAGTTTATTTATTCAATTTGATTTTCTTTTTTTTTTTTTCTCCTGGAGACGGAGTTTCGCTCTTG  2072

Query   17  TCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCC  90
            |.||||||.||||||||.||||||||||||||.|||||||||||||||.|.|||.||.|.||||||.|||||||
Sbjct 2073  TTGCCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAACCTCCGGCTCCCGGGTTCAAGCAATTCTCC  2146

Query   91  TGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAG  164
            ||.|||.||||||.||||||||||||||||||||.|.|.|.|||||||||.|||||  |||||.||||||||||
Sbjct 2147  TGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGCTCCCACCACCATGCCCAGCTAA--TTTTTGGTATTTTTAG  2218

Query  165  TAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG-------------------  219
            ||||||..|.||||||||||||||||||||||||||||.||||||||||||||.|                   
Sbjct 2219  TAGAGACAGAGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGACTGCTTTGGCT  2292

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2293  TCCCAAACTGCTGGCATTACAGGCGTGAGCCACTGCGCCCTGGCCTATTCTACTGGATTTTCTATGCAATTGTG  2366

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2367  TTATAACTCATCATAAAGATAATTTTATTTCTTTTCCACAATCTTTACAGGTTTAATTTTTTTCTATGCCTTGC  2440

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2441  TGCACTCTCTATGATTTCCAGTATTGGCACTACTCTGGCCTTTGGTCTTTGCTCTTGCATCAGCCTTTCATAAT  2514

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2515  TGGGTATGTTTGTTGTAAGTTTTCTGTAGAGAGTCTTTATGAGGTTAAGAGATTTGTTTCATTTCTAGTTTATT  2588

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2589  AAGAGATTTTATTATAGATCAATGTTAAATTTTATCAAAATTTCTCCATTGCATTTCTATTGAGATGATCACAT  2662

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2663  GATTATTAAAAATTAGTATAAAGATTTATTATTTTGATATTTTAAAATCAGGTTTATTGAGGCATAATTTATAT  2736

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2737  ATAATAAAATTTACCCTATTAGAGTATCCAGTCCAGTAAGTTTTGGTAAATGTATGCGAATAACACAATAAACA  2810

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2811  GGTTTAGAACTTTTCCATCACCACAAAAAGTTTATCAGGCCCCTTTGCAGTTAATACTCACCTTCTCTCCAGCC  2884

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2885  CCAGTAAACCATGGATCTGCTTTTTGTTACTGTAGTTTTTCCTTTACTTTGATTTTTTTGAGTGTTAAGCCAGC  2958

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2959  CTTACATTTCTGAGTTAACTTGGTCATGATATCTTCTACAAACATTAATGAATTTAGTATGATTGGCTGATGCC  3032

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3033  TTTGCTTTCCTATACTGTCCTTGCCTGGTTGGTACAAGGATTATATAATACTTATAAAGTGAGTTGAAGACAGT  3106

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3107  TTCCTCTTTTCACCAGCTGGAATAATTTATGTATTATTGAAATTAATTGCTCCTTAAATACTTGGCAGAATTCA  3180

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3181  CTACAAAGGCACTTAATTCTAGACCTTTTGGAGGAAGATAAAATACTGATTTTTTAAATCATTATTTTATTTTT  3254

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3255  GTAATACAGCTTATTTTTCCAGAAACTTCTACTTTTCGTTTACATCTTCAAGTCAGATTAAAGTTGTATTAATA  3328

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3329  ACCCCTTATTATTTAAATCTCAGCAGAATGTGAAGTTATGTTCCCCCTTTGTATCCATTTTTTTCTCTAGATAT  3402

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3403  TTTTCTGTTACCTGTTTTAAATTTAATTCCATTGTGGTCAGAGATAATACTTTGTATGACTTGCATTCTTTTAT  3476

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3477  GTATATTGAGACTTGTTATAAGGCACAGAGTATGGTTTATCTTGGTAATCATTCGTGGCACACTTAAAAATCAT  3550

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3551  GTGTTTTCTGCTATTGTTGAGTGGGATGTTCTGTAACTGTGAATTAGGTCAAGTTAGTTGACAGTGTTGTTCAA  3624

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3625  GTCTTTTATATTATTACTGACTTTCTTTCTACTCACTCTATCAATTAGTGAAAGGTGTCAATATTTCCAGTTAT  3698

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3699  AATCATGGATTTGTCTATTATTACTTTCAGTTAGAAATTTCTAGCTGAAATTATCTATTTCTACTTTCAGTTAG  3772

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3773  TGTTAGCTTGCTATATCTTTTTTCCATCCTTCTTCTTTTAACCCAATGTATCTTTATATTGACATTACATATAT  3846

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3847  GATTTATATTATATTATGTTACTATATCTTGTATGCAGCATATATTTGGATCTTTTTTATCCAATCTGATGATC  3920

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3921  TTTGCTTTTTAATTAATGTATTTAGATCATTTACATTTACTGTGATTATTAATATGTATTAAGTTCAAATCTAC  3994

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3995  CACTTTGGTATTGAATATCTAATTGTCCCATTTGTTCTTTGTTTCAAAAAAACTCTTTTTTTGCCTTTTTTTAT  4068

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4069  ATCAAGTATTTTAAAATTCTATTTCATCTTCTTTGTTTGCTTATTAGCTATAACTTTATTTTGCTAATTTAGTG  4142

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4143  GTTGCTTTAGGGTTTATAGTAAACATCTTCAACTTATCACATTCTATGTTCTAGTCATATTATATTATTTAACA  4216

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4217  CATAGTATAAAAACTTTATTGTAGTATACTTTCATTTTCCTCCAGTAATTGTGCGATTCTTGTCATCTATTTTG  4290

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4291  CTTCTACATGTTATAAACTCTACATGATTTTGTAATATTTTTGTTTAAACAATATTTATTTAGACTTAATAATA  4364

Query  220  ------------------------  219
                                    
Sbjct 4365  AATAATAAAAATATATGCTAACCA  4388

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