Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- NR_103517.2
- Aligned Length:
- 6110
- Identities:
- 191
- Gaps:
- 5893
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCCTCGGGTAACGGTCGCGAGAGGCCGCTTGCATGACCCTGACATCGGCAGCGGGAGCGGCGGCCAGACTCTCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGGAAGTTTAGGATATTTCACAGTTCTGAATGTTAGCCACTGAAAATGCCAGTAGATGATGAAGCCTCTGAAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGACACGGATTCATTTTTCTCAAACAGCCCAAGAACCTTTATTTTCCAATAAGAGAATATAACAATTTCTGTAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACTATGGAAGAGTTTGACTTGGTGAAAACCTTACACAAAACTTCATCTTCTGTAGGATCTGATGAAAATTCTCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCATTCTCTTGGACTGAACTTAAATACTGATAGAAGTAGTCCCCACCTTAGTACAAATGGGGTATCCTCTTTCT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAGGGAAGACCAGACCATCTGTAATTCAAGGTACAGTTGAAGTCCTAACTTCTTTAATGCAAGAGCTACAAAAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGTGGAAAGACTGATTCGGAACTTTGGAAAAACTGTGAGAATGTAGAGTAAGCGAAATGAAAGATTACCTGGTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TAAGAATTCGATAGCAGCAACTGCTAAGTACCAGGTGGTTACAGCTATTCAATTTGGTGGAAAAACAATGCCAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAACAGATAGTTGCCCAGCAGGAGCAGTTCCACAACCAAATTCAACATATACAGGAGGAGATAAAAAATTTAGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAAATTACAGACTAGTAGTGCTTCCTTAGCTTCCTGTGAAGGAAATTCTTCAAACAAACAAGTATCTTCGGAAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GTCAAATGGGTTTTTTTTCTCTAAGCAGTGAGAGAAATGAATCTGTTATCCATTATCCTGAATCCACAGAACCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GAAATACAGCAAGAAATGTCCACGTCACAACCAGACTGCAATGTGGATAGTTGCTCAGTAAGCAGTGGATATGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CACCTTTTGTATCTCAGAATTAAATCTGTACAAATCTAAAGACCCTAAGGAGTTCATGGAGCACATAGATGTTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CCAAAGGACAGTATGTAGCACCTGCGGTGCCGGCTGAGTCACTTGTAGATGGTGTGAAAAATGAGAATTTTTAT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATACAGACTCCTGAAGAGTGTCATGTGTCTTTAAAGGAAGATGTATCCATTTCTCCTGGTGAATTTGAACATAA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTTTCTTGGTGAAAATAAGGTTTCTGAAGTATACAGTGGGAAAACAAATAGTAATGCTATAACATCATGGGCAC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AAAAACTGAAGCAGAACCAACCAAAGAGAGCACATGTAGAAGATGGAGGTTCAAGATCTAAACAAGGAAATGAG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CAAAGTAAGAAGACACCAATTGAGAAATCTGATTTTGCTGCTGCTACACATCCTCGTGCTTTTTACCTCAGTAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ACCAGATGAAACTCCAAATGCTTGGATGTCTGATTCAGGAACAGGATTGACTTACTGGAAACTAGAGGAAAAGG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ATATGCACCACTCTTTGCCTGAAACTTTAGAGAAGACGTTCATATCATTGTCTTCCACAGATGTGTCACCAAAC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CAGTCTAATACTAGTAATGAGATGAAGCTACCGTCACTGAAGGATATTTATTATAAAAAACAAAGGGAAAACAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GCAGTTACCTGAGAGGAATCTCACTTCTGCTTCCAACCCAAATCATCCACCAGAGGTAAAGTTGTCCACATTCT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GCCGAGTGAACGTGAACAATGCTTCCTGACTCTAACTTTTACCTCAAGCTTCATTTTCCCTAGGAGATCTAAAG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CCTACTCACTTCAAAACAAGCAAAACAAAGCCGAGTTCTGAGGGATTAGGCAGAATCTGAAGGAAAAGCATGCT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CGACACATAGCAGATCTTCGAGCTTATTATGAATCAGAAATAAATAGTTTGAAACAGAAGCTGGAGGCAAAAGA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AATCTCTGGAGTTGAAGATTGGAAGATAACCAATCAAATTCTTGTAGACAGATGTGGCCAATTAGATAGTGCTT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TGCATGAAGCTACTAGTCGCGTGAGAACACTTGAAAATAAGAATAACTTACTGGAAATTGAAGTGAATGATTTG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AGAGAACGCTTCAGTGCAGCCAGCAGTGCTTCCAAAATTTTGCAGGAACGAATTGAAGAAATGAGAACAAGCAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TAAAGAAAAAGACAATACCATCATTCGACTAAAATCTAGACTGCAAGATTTAGAAGAAGCATTTGAGAATGCTT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ACAAACTCTCAGATGATAAAGAAGCTCAACTAAAACAAGAGAACAAAATGTTTCAAGATCTTTTAGGAGAGTAT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GAGTCCCTTGGAAAAGAACACAGGAGAGTAAAGGATGCATTAAATACAACTGAGAACAAATTGCTTGATGCATA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TACTCAGATTTCTGATTTGAAAAGAATGATTTCAAAACTTGAAGCTCAGGTCAAGCAAGTAGAACATGAAAATA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TGTTAAGCCTTCGTCATAATTCTAGAATTCACGTGAGACCCTCGCGTGCCAACACACTAGCAACTTCAGACGTC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AGCAGGCGGAAATGGCTGATTCCAGGTGCAGAGTATTCCATCTTTACTGGCCAGCCTCTGGACACCCAGGACAG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TAACGTGGATAACCAGCTGGAGGAAACCTGTAGCCTAGGGCACCGTTCACCTCTGGAAAAGGATTCTTCACCTG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GAAGTTCATCAACAAGCTTGTTGATAAAAAAGCAAAGAGAGACTTCAGACACGCCGATCATGAGAGCTTTAAAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GAACTTGATGAGGGAAAAATATTTAAAAATTGGGGGACACAGACAGAGAAAGAGGACACCTCAAATATAAATCC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TCGGCAAACTGAAACTTCAGTTAATGCAAGTCGTTCTCCAGAAAAGTGTGCCCAACAGAGACAAAAGAGACTTA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ATTCGGCCTCACAGAGATCATCATCTTTACCACCTTCAAATCGTAAATCAAGTACTCCAACAAAAAGAGAGATT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ATGCTAACACCAGTGACTGTGGCTTATAGTCCAAAGCGATCCCCTAAAGAAAACTTGTCCCCAGGATTTAGTCA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TCTGCTTAGCAAAAATGAGAGCAGTCCAATTCGATTTGATATACTTTTGGATGATTTAGATACTGTTCCTGTGT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CTACATTACAACGTACCAATCCAAGAAAGCAACTCCAGTTTCTTCCTCTAGATGACTCGGAAGAAAAAACTTAT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TCTGAGAAAGCCACCGATAACCATGTTAATCATAGCTCTTGCCCTGAACCGGTGCCAAATGGAGTGAAGAAAGT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 ATCTGTGAGAACAGCCTGGGAGAAGAATAAATCAGTTAGCTACGAACAGTGTAAGCCGGTTTCAGTCACTCCAC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 AGGGGAATGATTTTGAATATACAGCAAAAATTCGGACCCTAGCTGAAACAGAACGATTTTTTGATGAACTTACA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 AAAGAAAAGGACCAGATTGAGGCAGCACTAAGCAGGATGCCTTCTCCTGGAGGACGAATCACTTTACAGACAAG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 ATTAAATCAGGAAGCCTTGGAAGATCGTTTGGAAAGGATTAATCGAGAACTGGGTTCAGTTCGCATGACGCTAA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AGAAATTCCATGTTTTGCGCACCTCTGCAAATCTTTGAGATTTGTAGCCATTAAATTTTGAGACATTTTTGTTT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GCACTAATGTATAATTATGCAGTCAGAAAAGGCAAACTATTTTGTACTGTTTATAAGCCTTCAAACAGTAGTTT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TACAATCATGCTATTCTTACACTTGCTATTTTATACTTCAAATGGCCACATATTTTCAAGATATTTTTGTTATG 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 CTCAGGAATCTCTTGTATATTTTACTATTTAAAAAGCATTATTTTTAAATAGTATCTGTCTCCAATTTATATCA 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 AGAATAAGGAAATATAAACAGAGGAAGCAGCTTGTTTCTAAACAAATAGTGTTATCCTTTTACAATTAACTGCA 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 CATCAATTTTATAGACTTGTTCTACATTGTAAATACAATTCAGTTTTTAAAAAATAAAGCTTAATAGCTTCCAT 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 AATGATAGACTAGTACATGCTGAATACATAAACAATTACAGTGTACCTTGGATTTCAGTTGTGTTGAGGTTTTT 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 AAAAAATGATAATGCAATTCGTATTTGAAACGTGTCTTAGAGTGAATATCAGAATAGTAATAATGGACTCTTGG 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 AAAGCTTTGAAAACTACATGAATATAACTCATTTTCTTTAAACTTTATTGTCTGTAAGAGAAAAAAGAGAGATT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 GTAATTCTCTAATTTTATCTTTTCTAAAAAAGTTAAACAATTGGAGAGCCCTCTCTGGAGGGCTCTCAGAGTAG 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 CTCTCTGCCCATTGTTCTGAATTAACTTGTGTCCCACCCTGGACAATAAATGGACAGATAAACCCTTTGAAATA 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 CAAGCCACCACCCCGTGAGGGATTAAGAGGGCAGCCTGGTTTTCTTAGTGTGCATGGCTTCAGCTGTCCGTCAT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 AGTTGTCATCTGGATATGTTCACCCCTTTCCACTCCTTCACCCTGGCCAAAAGGAAAATATTTCCACTGTAGGT 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 GCTGTAAGAACACTAGACTTTAGATCATCACAATCTACTGTATTTGTTAATGGACAGGGAGTGTGTCCGGATGG 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 AGCCTGGTGCCTTCCCCTCGGCCTTGCAGAGGGCTCCAGCCCACTGCCTCTGTGGTAGCCGCTGGCTCTCAGAA 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 GTAGCACGTGGGCAGGAGTCTCTCCTCTGATCCAGGAGCATTGGCAGGTTTGTGTTGGGACTGCTGGTTAAGTT 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 GGAGCTGTGTAACTACTTAGTTTTTGGTAGCCAATCAGAACGCAGTGCCCCACATATTCCAGCTCGGTACATGT 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 TGATAAACAGACTCATCCAAACTTTCAAAATGGATTCGTACTAAACATGCTCAGGTTTTAAATTTTGGTTTGCT 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 TTTGAGCTTTTCCTCTTTATGTGGCTCTTAATAATAAGTAGTTAGAATGAACCAAGCCATCCCAGTTATTCCAA 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 GCAGGCTCTCAAATGACCTTTGAGCACCCTTCACCTGGCTGGTCCCCAGGCCAGGGGTCCACAGCCCTGCTCCC 4958
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4959 TTCTCAGCAAGGAGGGTGGCCTGTCTGACAGTGCAGTTGAACCTTTGCTCCCTACTCTGCAACTTTTGAAGACT 5032
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5033 TCAGGCTAATCAAAATTACTTATAATTAGAATCAAGTGCCTTTATTCTTGTTTTTTATTTTTATTTTATTTTAT 5106
Query 1 ----------------ATGGAGTCTCATTC---TGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCAC 55
|||||||.| |.| |||.||||||.||||||||.|.||||||||||||.||||||
Sbjct 5107 TTATTTATTTTTTTAGATGGAGTTT--TGCCCTTGTTGCCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCAC 5178
Query 56 TGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACG 129
|||||||||||||||.||.|.||||||||||||||||||||.||||.|.|.|||||||||||||||||||...|
Sbjct 5179 TGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTGCTGGGTAGCTGGGATTACAGGCATCTG 5252
Query 130 CAACCATGCCCGGCTAATT---------------------------------------------TTTTTTGTAT 158
|.||||.|||||||||||| ||||||.|.|
Sbjct 5253 CCACCACGCCCGGCTAATTTTGTGTGTGTGTATATGTCTATGTGTGTGTGTGTATGTATATATCTTTTTTTTTT 5326
Query 159 TTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG------------- 219
|||||||||||||||.||||||||||.|||||||||||||||||.|||||||||.||||.|
Sbjct 5327 TTTTAGTAGAGATGGTGTTTCACCATATTGGCCAGGCTGGTCTCAAACTCCTGAACTCATGTGATCCGCCTGCC 5400
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5401 TTGGCCCCTCAAAGTGCTGGGATTACAGGCATGAGCCACCACACCCGGCCTATTCTTGGTATTCTTTATTCTTG 5474
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5475 GTTTTCTAGCCTTTAGAAAAAAAAAATCTAGTCTTGGTAAAGAAAATGTTCATTTTAATCAAGCTCCAGTACAG 5548
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5549 CTTGTGTCAAGACCTAGTAAGACCACCTTTAATGTGTTCCTGGATATGACATTAAAAACTAACTTGAAAATTGT 5622
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5623 TAGGATATTTCCTTGTTCCCTACTTTTATTGTAAAATCTACTACATTCTTAAGAATTAAAAAATGCCATTTCAG 5696
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5697 AAGAGATGATAGTTTTATCTTGCCAAGGAATTATCTTCTTAGTAGCCTATATTGGCTTATTCCAAAAAAGGCGT 5770
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5771 TAACCTCCATCAAAACATCTTCTGCGCCTCTCTCTCAGCATATGCTTTGATATTTGAAGTGTGTAATAGATTGG 5844
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5845 AGCTATCAGTCACTTATTTCTAAAAAATGTATTCTTTTTTCTTCATAGCTGTGAAGAGGGATACCAAGGAAAGT 5918
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5919 TCTTTCTGCTGTCTTTCTCTTCGGTAATGCTTATCTTATGAACACTCAACTGAAAAAACACTCCACCTAAAAGC 5992
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5993 AGGAAAGATGGCAATTCTAAATAGCAGCTATTATCCCCGGGTATAAACTATTTTTGTTGTTGGCTTGGGGCTTT 6066
Query 220 ------------------------------------------ 219
Sbjct 6067 GCTGCAGGTATTAATAGTTTAAAAAGAAAAAAAAAAAAAAAA 6108
