Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- NR_136509.2
- Aligned Length:
- 4506
- Identities:
- 193
- Gaps:
- 4292
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTTTGATGGGTTCCGGGTCCCAAAAGGGTTCGAGGCCTCTTGCCTTCGCTCCGTAGGAGGGAGTTCTCTTCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCCCTGGGGGCCGCAGGACTGTCCAGGAATACAGTTTCCAGGTGAGATCTTACTTGAAACACCGGTAGTTCTA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCACAGCTAAAATGGCATCTACTTGGGCTATCCAGGCCCACATGGACCAGGATGAACCTTTGGAAGTAAAGATA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGGAAGAGAAATATACCACCAGACAGGATTGGGACCTGCGTAAAAACAACACCCATAGCAGAGAGGTCTTCCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCAGTACTTCAGACAGTTCTGCTACCAGGAGACATCTGGTCCCCGTGAGGCTTTGAGCCGACTCCGAGAACTTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCCATCAGTGGCTGAGGCCAGAGACCCACACCAAAGAACAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACCATCCTACCTGAGGAGCTCCAGGCCTGGGTGCAGGAGCAGCATCCAGAGAGTGGGGAGGAGGTGGTGACTGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCTGGAGGATTTAGAGAGAGAACTGGATGAACCAGGAGAGCAGGTCTCAGTCCACACTGGGGAACAGGAAATGT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCTTGCAGGAGACGGTACGTCTACGAAAAGAAGGAGAACCCAGTATGTCCCTCCAGTCCATGAAAGCCCAGCCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAGTATGAATCTCCAGAACTTGAATCCCAACAGGAGCAAGTTTTAGATGTTGAGACTGGAAATGAGTATGGGAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTTAAAGCAAGAAGTTTCTGAAGAAATGGAACCACATGGGAAGACATCCAGTAAATTTGAAAATGATATGTCCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGTCTGCTAGGTGTGGAGAAACTCGTGAACCTGAAGAAATAACAGAAGAGCCCTCTGCTTGCTCCAGAGAAGAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AAACAACCTACCTGTGATGAAAATGGAGTAAGCCTGACTGAGAACTCTGACCATACTGAACATCAGAGAATCTG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCCAGGAGAAGAATCTTACGGATGTGATGACTGTGGAAAAGCTTTTAGTCAGCACTCACACCTCATAGAACATC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGAGGATCCATACTGGAGATAGACCCTACAAATGCGAAGAATGTGGAAAAGCTTTCCGTGGGAGAACTGTGCTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATTCGACACAAAATAATACACACTGGAGAGAAACCGTATAAGTGTAATGAATGTGGCAAAGCCTTTGGCCGGTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GTCAGCTCTTAACCAACATCAGAGACTTCACACAGGAGAAAAACACTATCACTGTAATGACTGTGGCAAAGCCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTAGTCAGAAAGCAGGCCTCTTTCACCATATCAAGATCCACACAAGAGACAAACCTTATCAGTGCACTCAGTGT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AATAAAAGTTTTAGTCGGCGTTCCATACTTACTCAGCATCAAGGAGTTCATACCGGCGCCAAGCCGTATGAGTG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CAACGAGTGTGGAAAAGCCTTTGTTTATAACTCATCCCTTGTTTCCCATCAGGAAATCCACCACAAAGAAAAAT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCTATCAGTGTAAGGAATGTGGGAAATCCTTCAGTCAGAGTGGCCTTATTCAGCATCAGAGAATTCACACTGGG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GAAAAACCCTACAAATGTGACGTATGTGAAAAAGCCTTTATTCAAAGGACAAGTCTTACAGAACATCAGCGAAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TCACACTGGAGAAAGACCCTATAAATGTGATAAGTGTGGGAAGGCGTTTACTCAAAGATCAGTCCTCACGGAAC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ATCAGAGAATCCACACTGGAGAGAGGCCCTACAAGTGTGATGAGTGTGGGAATGCCTTCCGAGGAATCACCAGC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CTCATTCAGCATCAGAGAATCCACACTGGGGAGAAGCCCTACCAATGTGATGAGTGTGGAAAAGCCTTCAGACA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GAGGTCAGATCTTAGTAAACACCAGAGAATCCATAATAGACGTGGTACCTATGTATGTAAAGAGTGTGGGAAAT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CATTCAGGCAGAACTCAGCTCTTACTCAACATCAGACTATCCACAAAGGAGAAAAATCTGTTTCTGTGTGATGA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CTACAGGGAAGTTATCTCACAGAGTTCAGGCCGGAAGAAGACCAGCTACAAGGAAATACTTCTGAAAAATCACT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CTGAACCCCAAGCTGGAGTGAATCTTCTCCTGAGCTCTCTCATTCCAGAATGGCAATCTTGTTTCAGGAGAGAT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CTCTAATAGTGACTGATGGTAAAGGAAGAAGGCTGTGCCTAGAACAAAGAATCAGGCTGGCAAAGAAATCACAG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GTCTTTCCTCAAACTTTAAATTGCTACTCTCTGGAGATAGCTACCTGGACTTTACAGAGCTGTCAGAAGACTTG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GGAAGGTTTGCCAGCATTGGAAAAAGCCACTTGGACTTCACAGAGCTGTCAGAAGACTTAGGAAGCTTTGCCAG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TAGTTCCTGAGACCAGAAATACATATTATGAAGCAGGTGCTGGAACAGGCCCTGGCCCCTACTTGTGAAGCTGC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AGATATAGATGGTGTTACTGAGAAGGAAACTAAGGACTTGGCTCCAAAACAAAACAAAACAAAATCTGGAGATG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CTGAATTTTGTTGGGGGGAATGTCTGTAGAACTGCAACATCAATGCAGTAAGTGTAGTAAAAGCTTTAGTTTAT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GGTGAGTCATTACTCAGCATCATGGAGTCCACGATGAAGAGAATCTCTTTTCAATCTGTGCAATCAACAAGTTT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTGAAAGGCTTTTGTTTATAGTGGAACCCTCTTTTCCCCCTAGAAGAACCACCACAAGGAAAAATGCTGTCACC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 ATAAGGAATGTGGGAAAGTTTTCAGCCACATGGCCTTATTTGACTTCAAAGAATCCACATGAGAGAGAGACTGC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ATAAATGTAATAACTGAGGAGGCCTTTGTTCAGCAAAGAAACCTTATACAAACTCGTATAAAGAATGTAGGAAG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ACCTTCACCCAGAAGCCAGGACTGACTGTGCACCAGAGAATCTGCACAATAAACATGATGAATGTGGAGATGCT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TGCTTCAGCATTGGAGAATTCACAGTAAAGGGAAACCCTGCCAGTGTGATGAGTACGGAAAAGTCTTCAGAGGT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TGGAACTTGGGAAAAATCAGTGAGTGAATTCATATTAGAGAGGCTCTTATAAATGAGAGGATTGTGGAAACTTG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TATAGACAGAGATCAGACCTCAACAAGGGAGCCTCCACAGTATTGAAAAGTTAATATAATTAATGTAAGTGGGC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AAGTTGTATGGGGAATGGGTAGTCTAAATTGCTCATTTTAGCCAGTAAAAACATTAAATTAGTTTCTTAGATCA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 AGAAAAGGAAATGTTAGAAGTTATTTTTCCCTTCCAGAGGGGTCTATATGTGTAAGCAACCAGGACTTTTGAAA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TAAGTTGCATCTCTGGATTTGTGATCTGTCTCCTGGATGATTATCTCTGTTTTGGGAGACAGGTATTTTTTCTT 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CATGCCTGCTCTAGTCTCATCTCATATCTTTAATTCATTCAGCAAGTATACACAATAGTATTATCGTCTACTGT 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TTGTTGTAAATATATATATATTATTTTCTTTTTGGTCTGAGTAGGCTTGTATTGGTACCCTAGGACATAAAAAT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CACATATATCATGTTTCAGTAAATGCAGTGAAAGGAACTATATTATTAAATTGCTGGGAATTTCTGTAAATTTG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 AGACTACCTTTATATTCTCCAACACAAGACCGTGTAGGTGTCCCTTCAGAGAGTATATTTTTCTAGCTTGGCTT 3700
Query 1 ------------------------ATGGAGTCT--CATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTC 48
||||||||| | |.|||||||||||.||||||||.|.|||||.||||||
Sbjct 3701 CTTTATTTTCTTTATTTTTTTGAGATGGAGTCTTGC-TCCTGTCGCCCAGGCTGGAGTGCAATGGCACGATCTC 3773
Query 49 GGCTCACTGCAACCTCTGCCTCTCGAGG-TCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACA 121
||||||||||||||||.||||| |.||| |||||.||||||||||.|||.|.||||.|||||||||||||||||
Sbjct 3774 GGCTCACTGCAACCTCCGCCTC-CCAGGTTCAAGTGATTCTCCTGTCTCAGTCTCCCGAGTAGCTGGGATTACA 3846
Query 122 GGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGC 195
|||||..||.|||||.|||.||||| |||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 3847 GGCACTTGCCACCATTCCCAGCTAA---TTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGC 3917
Query 196 TGGTCTCGAACTCCTGACCTCAAG-------------------------------------------------- 219
||||||||||||||||||||...|
Sbjct 3918 TGGTCTCGAACTCCTGACCTTGTGATCTGCCCACCTTGGCCTCCCAAAGTTCAGGGATTACAGGCATGAGCCAC 3991
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3992 CATGCCCGGCTGTTTTTTTAAGATAGAAAAATATACTTCATGTATAGCCTATTGACAGATAATGACTGATATTT 4065
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4066 TTTCTTATAGATAACACATAATAAACATTGTGAAGACTAATAAGTAACTTGCTTATTCTTTTCAGTTCTAAAAC 4139
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4140 CTGTAGGAAAGAATCTTTAGAAGCTGTCAACAAGTTGATAATGTAGCCCAATCTCTACCCATGATAGGAGAGTA 4213
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4214 AGGCTTATATATTTTATAGTAGGGCACTAAATACAGGAACCATGTATTTAAAAACTTTTTAGTGATTATCTCAG 4287
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4288 AATTCTAGGTGTCCCTCTGCTGTACATCCCTAAATTTTTTGCATAGGTATTATTAATAAATTCATTATTTTCAA 4361
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4362 AGATGGACTGTGTTCTGTAAAAAGCTTTTCCAGTATCTGCAAATCACACAGTTTTTTTTAACTCTATTACTATT 4435
Query 220 ------------------------------------------------------------------ 219
Sbjct 4436 ATATAAAATGATTTCTTAATATTGAACCAACCTTGCATTCCTAGAATAAACCTCACTTAGCCATGA 4501
