Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- NR_136512.2
- Aligned Length:
- 4540
- Identities:
- 193
- Gaps:
- 4326
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTTTGATGGGTTCCGGGTCCCAAAAGGGTTCGAGGCCTCTTGCCTTCGCTCCGTAGGAGGGAGTTCTCTTCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCCCTGGGGGCCGCAGGACTGTCCAGGAATACAGTTTCCAGGTGAGATCTTACTTGAAACACCGGTAGTTCTA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCACAGCTAAAATGGCATCTACTTGGGCTATCCAGGCCCACATGGACCAGGATGAACCTTTGGAAGTAAAGATA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGGAAGAGAAATATACCACCAGACAGGATTGGGACCTGCGTAAAAACAACACCCATAGCAGAGAGGTCTTCCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCAGTACTTCAGACAGTTCTGCTACCAGGAGACATCTGGTCCCCGTGAGGCTTTGAGCCGACTCCGAGAACTTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCCATCAGTGGCTGAGGCCAGAGACCCACACCAAAGAACAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACCATCCTACCTGAGGAGCTCCAGGCCTGGGTGCAGGAGCAGCATCCAGAGAGTGGGGAGGAGGTGGTGACTGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCTGGAGGATTTAGAGAGAGAACTGGATGAACCAGGAGAGCAGAGTGAGTCTGTCAGCTACATCTCATTTTCCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAGGTCTCAGTCCACACTGGGGAACAGGAAATGTTCTTGCAGGAGACGGTACGTCTACGAAAAGAAGGAGAACC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAGTATGTCCCTCCAGTCCATGAAAGCCCAGCCAAAGTATGAATCTCCAGAACTTGAATCCCAACAGGAGCAAG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTTTAGATGTTGAGACTGGAAATGAGTATGGGAATTTAAAGCAAGAAGTTTCTGAAGAAATGGAACCACATGGG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGACATCCAGTAAATTTGAAAATGATATGTCCAAGTCTGCTAGGTGTGGAGAAACTCGTGAACCTGAAGAAAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AACAGAAGAGCCCTCTGCTTGCTCCAGAGAAGATAAACAACCTACCTGTGATGAAAATGGAGTAAGCCTGACTG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGAACTCTGACCATACTGAACATCAGAGAATCTGTCCAGGAGAAGAATCTTACGGATGTGATGACTGTGGAAAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCTTTTAGTCAGCACTCACACCTCATAGAACATCAGAGGATCCATACTGGAGATAGACCCTACAAATGCGAAGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATGTGGAAAAGCTTTCCGTGGGAGAACTGTGCTTATTCGACACAAAATAATACACACTGGAGAGAAACCGTATA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGTGTAATGAATGTGGCAAAGCCTTTGGCCGGTGGTCAGCTCTTAACCAACATCAGAGACTTCACACAGGAGAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AAACACTATCACTGTAATGACTGTGGCAAAGCCTTTAGTCAGAAAGCAGGCCTCTTTCACCATATCAAGATCCA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CACAAGAGACAAACCTTATCAGTGCACTCAGTGTAATAAAAGTTTTAGTCGGCGTTCCATACTTACTCAGCATC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AAGGAGTTCATACCGGCGCCAAGCCGTATGAGTGCAACGAGTGTGGAAAAGCCTTTGTTTATAACTCATCCCTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GTTTCCCATCAGGAAATCCACCACAAAGAAAAATGCTATCAGTGTAAGGAATGTGGGAAATCCTTCAGTCAGAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TGGCCTTATTCAGCATCAGAGAATTCACACTGGGGAAAAACCCTACAAATGTGACGTATGTGAAAAAGCCTTTA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTCAAAGGACAAGTCTTACAGAACATCAGCGAATTCACACTGGAGAAAGACCCTATAAATGTGATAAGTGTGGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AAGGCGTTTACTCAAAGATCAGTCCTCACGGAACATCAGAGAATCCACACTGGAGAGAGGCCCTACAAGTGTGA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGAGTGTGGGAATGCCTTCCGAGGAATCACCAGCCTCATTCAGCATCAGAGAATCCACACTGGGGAGAAGCCCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ACCAATGTGATGAGTGTGGAAAAGCCTTCAGACAGAGGTCAGATCTTAGTAAACACCAGAGAATCCATAATAGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CGTGGTACCTATGTATGTAAAGAGTGTGGGAAATCATTCAGGCAGAACTCAGCTCTTACTCAACATCAGACTAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CCACAAAGGAGAAAAATCTGTTTCTGTGTGATGACTACAGGGAAGTTATCTCACAGAGTTCAGGCCGGAAGAAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ACCAGCTACAAGGAAATACTTCTGAAAAATCACTCTGAACCCCAAGCTGGAGTGAATCTTCTCCTGAGCTCTCT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CATTCCAGAATGGCAATCTTGTTTCAGGAGAGATCTCTAATAGTGACTGATGGTAAAGGAAGAAGGCTGTGCCT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AGAACAAAGAATCAGGCTGGCAAAGAAATCACAGGTCTTTCCTCAAACTTTAAATTGCTACTCTCTGGAGATAG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CTACCTGGACTTTACAGAGCTGTCAGAAGACTTGGGAAGGTTTGCCAGCATTGGAAAAAGCCACTTGGACTTCA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CAGAGCTGTCAGAAGACTTAGGAAGCTTTGCCAGTAGTTCCTGAGACCAGAAATACATATTATGAAGCAGGTGC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TGGAACAGGCCCTGGCCCCTACTTGTGAAGCTGCAGATATAGATGGTGTTACTGAGAAGGAAACTAAGGACTTG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GCTCCAAAACAAAACAAAACAAAATCTGGAGATGCTGAATTTTGTTGGGGGGAATGTCTGTAGAACTGCAACAT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CAATGCAGTAAGTGTAGTAAAAGCTTTAGTTTATGGTGAGTCATTACTCAGCATCATGGAGTCCACGATGAAGA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GAATCTCTTTTCAATCTGTGCAATCAACAAGTTTTTGAAAGGCTTTTGTTTATAGTGGAACCCTCTTTTCCCCC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TAGAAGAACCACCACAAGGAAAAATGCTGTCACCATAAGGAATGTGGGAAAGTTTTCAGCCACATGGCCTTATT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TGACTTCAAAGAATCCACATGAGAGAGAGACTGCATAAATGTAATAACTGAGGAGGCCTTTGTTCAGCAAAGAA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ACCTTATACAAACTCGTATAAAGAATGTAGGAAGACCTTCACCCAGAAGCCAGGACTGACTGTGCACCAGAGAA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TCTGCACAATAAACATGATGAATGTGGAGATGCTTGCTTCAGCATTGGAGAATTCACAGTAAAGGGAAACCCTG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CCAGTGTGATGAGTACGGAAAAGTCTTCAGAGGTTGGAACTTGGGAAAAATCAGTGAGTGAATTCATATTAGAG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AGGCTCTTATAAATGAGAGGATTGTGGAAACTTGTATAGACAGAGATCAGACCTCAACAAGGGAGCCTCCACAG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TATTGAAAAGTTAATATAATTAATGTAAGTGGGCAAGTTGTATGGGGAATGGGTAGTCTAAATTGCTCATTTTA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GCCAGTAAAAACATTAAATTAGTTTCTTAGATCAAGAAAAGGAAATGTTAGAAGTTATTTTTCCCTTCCAGAGG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GGTCTATATGTGTAAGCAACCAGGACTTTTGAAATAAGTTGCATCTCTGGATTTGTGATCTGTCTCCTGGATGA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TTATCTCTGTTTTGGGAGACAGGTATTTTTTCTTCATGCCTGCTCTAGTCTCATCTCATATCTTTAATTCATTC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AGCAAGTATACACAATAGTATTATCGTCTACTGTTTGTTGTAAATATATATATATTATTTTCTTTTTGGTCTGA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GTAGGCTTGTATTGGTACCCTAGGACATAAAAATCACATATATCATGTTTCAGTAAATGCAGTGAAAGGAACTA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TATTATTAAATTGCTGGGAATTTCTGTAAATTTGAGACTACCTTTATATTCTCCAACACAAGACCGTGTAGGTG 3700
Query 1 ----------------------------------------------------------ATGGAGTCT--CATTC 14
||||||||| | |.|
Sbjct 3701 TCCCTTCAGAGAGTATATTTTTCTAGCTTGGCTTCTTTATTTTCTTTATTTTTTTGAGATGGAGTCTTGC-TCC 3773
Query 15 TGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGG-TCAAGCGATTC 87
||||||||||.||||||||.|.|||||.||||||||||||||||||||||.||||| |.||| |||||.|||||
Sbjct 3774 TGTCGCCCAGGCTGGAGTGCAATGGCACGATCTCGGCTCACTGCAACCTCCGCCTC-CCAGGTTCAAGTGATTC 3846
Query 88 TCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTT 161
|||||.|||.|.||||.||||||||||||||||||||||..||.|||||.|||.||||| ||||||||||||
Sbjct 3847 TCCTGTCTCAGTCTCCCGAGTAGCTGGGATTACAGGCACTTGCCACCATTCCCAGCTAA---TTTTTGTATTTT 3917
Query 162 TAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG---------------- 219
|||||||||.||||||||||||||||||||||||||||||||||||||||||||...|
Sbjct 3918 TAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTTGTGATCTGCCCACCTTGGC 3991
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3992 CTCCCAAAGTTCAGGGATTACAGGCATGAGCCACCATGCCCGGCTGTTTTTTTAAGATAGAAAAATATACTTCA 4065
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4066 TGTATAGCCTATTGACAGATAATGACTGATATTTTTTCTTATAGATAACACATAATAAACATTGTGAAGACTAA 4139
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4140 TAAGTAACTTGCTTATTCTTTTCAGTTCTAAAACCTGTAGGAAAGAATCTTTAGAAGCTGTCAACAAGTTGATA 4213
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4214 ATGTAGCCCAATCTCTACCCATGATAGGAGAGTAAGGCTTATATATTTTATAGTAGGGCACTAAATACAGGAAC 4287
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4288 CATGTATTTAAAAACTTTTTAGTGATTATCTCAGAATTCTAGGTGTCCCTCTGCTGTACATCCCTAAATTTTTT 4361
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4362 GCATAGGTATTATTAATAAATTCATTATTTTCAAAGATGGACTGTGTTCTGTAAAAAGCTTTTCCAGTATCTGC 4435
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4436 AAATCACACAGTTTTTTTTAACTCTATTACTATTATATAAAATGATTTCTTAATATTGAACCAACCTTGCATTC 4509
Query 220 -------------------------- 219
Sbjct 4510 CTAGAATAAACCTCACTTAGCCATGA 4535
