Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12783
Subject:
NR_144394.1
Aligned Length:
3279
Identities:
188
Gaps:
3064

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTTTTTTTTTTTTTTTCTAATTTTTGGTTGGTGGCGGCGGTGCTGGGCCAGGGGAAGGAAGGGACACGGAGGCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCCCTCGCCCCGCCACCTCCTACCAGCTTCCCCCCAGCCCCGGCTCCGGGAGATGTGCCGGGCGGGGGGCCCGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTTCGCCGAGCCGCAGGAGAGACACGCTGGGCCGACCCCAGAGCGGCGCTGGACAGGAAAACATTTAAAGTTGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGATATGTTATCAAAAGTAGAGAAAATGAAAGGAGAGCAAGAATCTCATAGCTTGTCAGCTCATTTGCAGCTTA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CATTTTTGGTTTCTTCCACAAAAATGATAAGCCATCACCAAACTCAGAAAATGAACAAAATTCTGTTACCCTGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AAGTCCTGCTTGTGAAAGTTTGCCACAAAAAAAGAAAGGATGTATGTTGTCCAATAAGGCAAGTTCCCACAGGT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AAAAAGCAGGTGCCTTTGAATCCTGACCTCAATCAAACAAAACCTGGAAATTTCCCGTCCCTTGCAGTTTCCAG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TAATGAATTTGAACCTAGTAACAGCCACATGGTGAAGTCTTACTCGTTGCTATTTAGAGTGACTCGTCCAAGAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GAAGAGAGTTTAATGGAATGATTAATGGAGAAACCATGAAAATATTGATGTCAGTGAAGAGCTTCCAGCCAGAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GAAAATGAAATCGTGAGGATGGGGAAAAGACATTTGTTGCACAAATGACAGTATTTGATAAAAACAGAGTTTCA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTCTTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTGGACTCACTGCAACCTCCACCTCCCAGGTTTAAGCAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TTCTCCTGCCTGAGCCTCTCGGATTACAGATGTCAGTACTTTGTGTGCTCTTGAAATAGGAAATGTACAGATCC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CTATTGCCAGACACATCATTCTCTCCATCCAGAAAGCCAACTTTGCAAGGACAAAAAAAAAAATTAGTGTGAAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CAAAATGTGGCTTTTCCAAAGACAGATGTGATTATTTATAGTCAATGTGGCCTCAAAATGTCATTGATTGTGAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ATAGCAAACATGCAGGATCATAATATTTGGACGGAATCTTGCACTGTCTCCCAGGCTGGAGTGCAGTGGCACGA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TCTCTGCTCACTGCAACCTCCGCCTCCAGGCTTCCAGTGATTCTCCTGCTTCAGCCTCCCGAGTAGCTGGGACT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ACAGGCGCACCTCACCACACCCAGCTAATTTTTAGTATTTTTAGTAGAGACGAGGTTTCACTATGTTGGCCAGG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ATGGTCTCGATCTCCTGACCTCGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATAATATGCATGAGCCA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CAGTGCCCGGCCTATGCTTTTTTTCTTTTTTTTGAGACGGAGTCTCGCTCAGTCACCCAGGCTGGAGTACAGTG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GCGCGATCTCAGCTCACTGTAACCTCTGCCTCCCAGGCTCAAGCAATTCTCATGCCTCAGCCTCCTGAGTGGCT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GGGATTATAGGTGTGTGCCACCACACCCTGCTAATTTTTTTTTTCTTTTTGAGACGGGTCTTGCCCTGTTGCCA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GGCTGAAGTGCAATGGCTCACTGCAACATTTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCACTCTCCCTAGT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TGCTGGGATTACAGGTGTGCACTACCACATCCAGCTAATTTTTGTATTTTTAGTAAAGATGGGGTTTCACCATG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TTGGCCAGGGTGGTGTCTTGATCTCCTAACCTTGTGATCCACCCACCTCAGCCTCCCGAAGTGCTGGGATTACA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GGCGGGAGCCATTGCGCCTGTCCTAATATTTGTATTTTTAGTAAAGATGGGGTTTTACCAGGTTGACCAGGCTG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GTCTCGAACTCCTGACCACAAGTGATCCAACCGCCTCGGCCTCCCAAAGTGCTGGGATTACAAGTGTGAGCCAC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TGCGTCCAGTCTCTTGGCCTCTAAAATTTTTTTTTTTTTTGAAACGGAGTCTTGCTGTGTCGCCCAGGCTGGAG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  AGTAGCTGGGACCACAGACACCCACCACCATGTCCGGCTAATTTTTTTATTTATAGTAGAGATGGGGTTTCACC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  ATGTTAGCCAGGATGTTCTCAATCTCCTGACCTCGTGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTAC  2220

Query    1  ---------------------------------------------------------------------ATGGA  5
                                                                                 .|.||
Sbjct 2221  AAGTGTGAGCCACCGTGCCTGGCCAGGCCTCTAAATTTTTAAGATTTACTTTTTAATTTTGTGTGTGTGTTTGA  2294

Query    6  GTCTCA--TTC-----TGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTC  72
            |.|.||  |||     |||.||||||.||||||||.|.||||||||||||.||||||||||||||||||||||.
Sbjct 2295  GACACAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCACTGCAACCTCTGCCTCTT  2368

Query   73  GAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACA--CGCAACCATGCCCGGCT  144
            |.|.||||||.|||||||||||||.||||||..|||||||||||||.||||||.|  .||.|||||||||||||
Sbjct 2369  GGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTGCAGGCATATGTGCCACCATGCCCGGCT  2442

Query  145  AATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAA  218
            .|    |||||||||||||||||||||||||||||.||||||||..||||.||||||||||||||.|||||||.
Sbjct 2443  GA----TTTTGTATTTTTAGTAGAGATGGGGTTTCTCCATGTTGCTCAGGTTGGTCTCGAACTCCCGACCTCAG  2512

Query  219  G-------------------------------------------------------------------------  219
            |                                                                         
Sbjct 2513  GTGATCCACCTGCCTCGGCCTACCAAAGTGCTGGGGTTACAGGTGTGAACCACTATGCCCAGCCTAAGATTGAC  2586

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2587  TTTTGAGAGATACTCTACTTACCTCTACTTACCAAGAGGAAAAGAGATATAAACATATTAAATAACAAGCATTT  2660

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2661  TATATACATTTCCCAGTTAATCTACGTAATAACCCTGTGAATACAGATGAGAAAACTACAGCTACAGGAAATAA  2734

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2735  AGAAGCCTTCCCACAGTAACACTGCCTATAAATGACGGAATAAACTCAGGATGTTTTGAATTCAAAGCTTATGT  2808

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2809  ATGCTCTATGCACTTCACTCTGCTTCCTGAGGCAGGTGAGATGTTTTAATATCTACTTGCCTGAATGTTAATGT  2882

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2883  CTGCCCACAGAAATAAGTCGGAGCTCTGGAGTAGAGAACACCCGATGATTCAGAATCGTTCCGAAGTGCTATAT  2956

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2957  TTCTTCGACTGCTCAGACTGTACCCCTCAAAACCAGCTGTCCACTCTTTTTCAAAGCAAAGATATTGAAAACTG  3030

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3031  TTAGAATCTCTTGAGGGATATCTTCAATACAGACACGTTAAATAAAACATGGAAATGGGAGACTACTCTTAGGG  3104

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3105  GCCATGGTCAAGTTCAATAAAATAAAAGATTCCATTAACAGGGTATCATGATCAGTCCCACAAATTACAAAAGA  3178

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3179  TTTTAGTATATTCCTGCATAATTTTGACATAATAAATCACACAAGTGTTATCTCTTATCTAATAAAATCATTGT  3252

Query  220  -----------------------  219
                                   
Sbjct 3253  ACAAGCAAAAAAAAAAAAAAAAA  3275

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.