Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- NR_145835.2
- Aligned Length:
- 6977
- Identities:
- 188
- Gaps:
- 6761
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTGGCTTGGCGGCCGTTGTCTGTGGAGGGGGGCCTCGCCGGGCTCCCGGAGGCCGAGCGGTTCCTGTTGCATG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TAAATCATGTCCTTGTGGTTACATATTTATTAGCAGAAAACTTTTAAATGCAAAACACTCAGAGAAATCACCAC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTTCTACAGAAAACAAGCATGAGGCCAAGAGGAGGCGAACAGAGAGAGTTAGGAGAGAGAAGATAAATTCTACA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTAAATAAAGATTTAGAAAACAGAAAGAGGTCTCGAAGTAACAGCCATTCAGATCATATCAGACGAGGAAGAGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAGACCTAAAAGTGCATCTGCCAAAAAACATGAGGAAGAAAGAGGGTGCAGAAAACCTATGCCGAGGACTCCTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTTTAGAAGGGAAACTAGGTAAAGAAAAGTCAGCAGAGAAAAAGGAAAAGAGAGAAATACTGCCTGGCTCAGAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AACAACATTCTTTTCAGTTGAAATAGAGGGAATGCAGCTGAAAGAAGAGAATGCTTCTGGTGAGAAACAGGAAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGGAAATTGACATCTATGCTAACCTGTCTGATGAAAAGGCTTTCGTGTTTTCAGTCGCCTTGGCAGAAATAAAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGAAAAATTATCAATCAAAGACTTATTCTCTGATACTTGTTTGCAAAATCTGCTGAAACTTCTGTCAGGATAAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATCAGCAAATTCTCAAACAGTTATGGACTCTCAGGAGCATTCTGACTGCATCAATAAGGGCCATCGATTGTTTC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTTCTCGCCTGTCGTTTAGCCTGTGCCACACTTCGGGAGCAAAGCTGTGTAGGCTTGGACTGTTCTGGGATTTC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTTGTTTACCAAGGAGTATTGTCAGTGTTTTGTGTTTGGGATATAAGTAAGTGTATTTGCCAACAACAAAAAAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AACCAACAAAAATGCTGGATGGATGTTAAAGGATAAAAAGTGATGGGGTATGGGGTAGGTATGAAAACTAGGGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AATAAGATGCTTGATTGTTTTCAGGTTTGCCACCAGAGATGCAATATTTTAAATACTGTCAGAAAGAGTGATTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTAAAAATATATATTTCAGATTTTCAGTGCTAACAGATTGCATATATACAGTTCATTTACTTTTATTAAATTGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CAATCGATATTTTATTGAATGGGGAATTAAGAATATAAACTGTAAATTTTGTCTTAAATTGATTTTTTTTCTTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GCCTTTATTTTTATTACTTAAGGTATGAGTTATATTTTAGGAGATACTTTCTAGACAGTTTGAAGTTTGGGTGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TATATGAAGAAAAACATTTAATGATATACTCAGATATAAACACCTTGTTTTCTTGAATGTAATTTATTTATTAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTAAAAAAAAAAAACAAACTGCTCTCAAGATGGTGCCTGTTAACCTAAACATGAAATATATTTATTACATGCAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AATATTTCTTAGCCACTTTTAAGCAGTAATGTTTTATCTGAATGGATATTTGTTTCTATATCCTGATAATTATT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TAAATTGTTACTTTCAATCTGGAAGAAAAAATAAACCTTAATATTGAAACTAAGTAGATTAAATAGTGTGATAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AAGTTTTTTGTTCTGGTGAAGTTTGTGAAATATATTTAAATTCTTAATTTTTCTAGTGTTAAGTCATAATCGTT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TATAGTTGATTTATATTAAATGCTTTTGCATTTTGGCATATCAATTTAATGATTAACATATTCAAACTTGGTAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TCACTCCCCTTATTTTCAGTCGCTCTTCCCCCAATCTGTTTAGAAATCCTTTTAAAGCCTTCTTACAGAAGATA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTCATCAGTTAGATTTAGCCCCCTTTTAAGAGAATCTCCCTTTCAATTTTAGCCGTAACATTATCAATTTCAGA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CTTCATCCTGCATCTCCCATCACCTCCTCAAAGAAAAAAGGTCAACATTTTTTCCTACTTTATTTAAATGGTAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CCAGCAGAGGGAGCTTAAGAGGTACTCTAGATAGGATAAAGAATTTTCCTAAGGATTCCTTTTCCTTTAATCCC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGTATCTATCTGCAGGTACTACTGCAACTATTTTGTATGCATTTTATTTATTTATTTAGGAGACAGAGTCTTGC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TCGGTCGCCCAGGCTGGAGTGCAGTGGCACTGTCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CTTATGCCTCAGCCTCCTGAGTAGCTGTGACTAGAGGCGTGCGCCACCACGCCTGGCTGTTTTTTTTTTTGTAT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TTTTTAGTACAGATGGGGTCTCAGCATGTTGGCCAGGCTGGTCTCAAATTCCTGGCCTTAGGTGATCTGCCCGC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACTCAGCCTTGTGTGCGTTTTAGAGTCTTAA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTAGTAGTTTCCCCAATAATGTAATGTGATTTTATCTTTGAAACATACTGTAAGGAAACTTTTGATTTTAAGTA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AAAAAGCTTAAAAATGATTAATATCTAAAAATGCTTGTATACATATATATGTCCTCAGAAAAAGCAAGAACAGC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTGTGGAATAAGCACGTCTTTAAGGAATTATCGATGTCAGAGTCTATCCATTTAAAGCTGAAGACCATTACAGG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AAAGTCATGTTAAAATATTCATTGGATATGGTAAAGGAGGTACTGGTGGCTGGGCTGGAGCTTGCCGTATAGAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AAGTAATTACTTCAGATCTCATAATGTTAAATTATTGGCTTATTTAAAAATTTCCGTGGCAGAGAGGCAAATTA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GGTTTCCTCTGTGACATAACCTATTTAACCAATTTTTCAAAAAATTGTACTCTATGAGCTTTCTTGTTATAAAG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CTAAAAAATTTAATTTGTCTAGGCATGTTGTAATGGTCCCAGAAAATATTACTTTGTCACTGGTGTCAGAGAAA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CCTCTGTCATCAGCAGATGTCCTAAGAGTATAATTATAGTTCTTTACTTAATCCAAAATTTGTTCTGCTCTGAT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 ATCTATAAATGATATGATTATTCAAAATACCTTGAAATGATTCCACAATTAGATTAGGTCTGTTGAAGATAACT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TATTCTTAAATATGAGTAAGATTAAATAAAAGTAGTTTGAGAGTTGTTACTCCCTGCCTCAACTCCATGGTATT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CCAAAATGTTTTTGTGGGCACTTTAATACTTGTAGTTTGATTTTGTTTGTTAGTTTTAGAAATGAACATTTCTT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AGATTTTCATGGGTATTTTTTGGCTGTATTTAAATGTAAATGATATAAAAGTAAGGGAAATTGTGCAAATTATT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TCTTGTGTAGTAATCAGTGGAAGTGATCAAACAGCTTGAAGCAGTTTATGATGAGAAAATTTAAAATTGCAAAT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GACCTGAAAATTTAGCCAGTCTATTCTTATTTCTTTAAATTTCAGAAATACTTAAGAAAAAAAAAAAAAAGGTC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AGTATGACCTCTGAGTTGCTTCCTAAAAGTAATCAGATAGTGTTCTCCCTCAGATAAGATTTCAAATTGAAAAG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TATTTGACTTCTTTAACTCTAGTAATTGCACTTGATTCTCTAATTCTGATCATTAAAATGACTTGGCAATATTT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 AATTTTGGCTTGCCTTTCAATCTGCATGTTTGTCTTAAATTTAGAAAAATTAAGCTCTTTACTTACTTTTATAT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 AAAGTATTAATTGGCCAGGCATGGTGGCTTACACCTGTAATCCCAACACTTTGGGAGGCCAAGGCAGGAGAGTT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GTTTGAAGCCAGGAGTTTGAGACCAGCCTGGGCAACATGATGAGACCGCGTCTCTACAAAAAGTAAAATTAGCT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GGGTGTGGTGCTTCCAGCTACTAGGCAGCTGAGGCTAAAGGATCACTTGAGCCCAGGAGTTCGAGGCTGCAGTG 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 AGTGATGATCTTGCCACTGCACTCCAGCCTGGGAGGCAGAGCAAGAAACACCCTGTGTGAAAAAAGTATTGAAT 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TTGTTTGATTCCACTTTCAAAATATGCTCTAGATACAGGTAGTCATTCTGCCAAATTGTGTTCTTCTCTAAAAC 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 ATTTTGTCCGTCATTCTTTGAAACTCATTCTTAATTATTTCCACTTTACCTTCTAGTTTGGTTTGATGCCTTAT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 ATTCTTGCTAGTTAAAAGCATTTTTTCCCTAGTATTTTCTGTCTTTCTAGCCTTTAAGGCATATTGTTGTTAAC 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 AAATCTCTTATTTAAGTTAATTAAAGTTTTTTCTGTGCAGCTGGGTTTTTTCTTTTACTACATGACAAGCTTCA 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 TTTTTACATTTGGAAGTACATGTATATATGTTTATATATTTTTATTCTCAGGATCTATTTTCTAGGGAACTATT 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 TTTTTAAATTATTCTTTTGTGCTGCCTTAACCCATTTATTATAGTTTGAATATTAGTAGTACTTACTACTCAAA 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 GATTACAACTATACTAATAACTATCCTAACATACAAAGCAGACTCTCCAGGATTAAAAGTATGAGACATATAAC 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 AGAGTCTGGAATAGAATAATTCTTTTTACCCCAGTCAAGTATTTGCCTTTTGCATTATTAAGGAATCTGTTTTG 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TTCTTTTATTGATAATTTCTATATTTTTTTCTTTGCCTTATTGCACTGGTTGGGACTTTTTGCCTTGATCCAGT 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 TGTAGGGGGGAAACATTCAGTCATTAAGCATTAAATAACTTTGTTGTTGTTGTGGGCTTGAAAAAATACCCTTT 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 AGTAGATTGAGGGTAGACTCTTTTATTTCTGCTTGTTGGAAGTTTTCTGTCAGGAACAGATGTTGAATTTTGTC 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 AGATGCTTTTTCTGCATAATTGATAGGACCTTTTTTCTCCCCTTTAGAATGTTCATATGGTGAAACATACTGAT 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 AGCTTTTCTTTTCTTTTTTTTTTGACACGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAATGGTGCGATCTT 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 GGCTCACTGCACCCTCTGCCTCTTGGGTTCAAGCTTCCCTCACCAGCCTCCCAAGTACCTGGGTATACAGGTGT 4958
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4959 GCATCACCATGCCCGGCTAATTTTTGAATTTTTAGTAGAGATAGGTTTTTACCATGTTGGCCAGGCTGGTCTTC 5032
Query 1 --------------------------ATGG------AGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCAT 42
.||| ||||||..||||||||||||.||||||.|.|||||..|
Sbjct 5033 AACTCCTGACTCAGCCTCCCAAAGTGTTGGGATTACAGTCTCGCTCTGTCGCCCAGGCTGGAGGGCAGTGGTGT 5106
Query 43 GATCTCGGCTCA--------CTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGT 108
|||||.|||||| .|||||||||||||||.||||.|||||||||||||||||||..||||||.||||
Sbjct 5107 GATCTTGGCTCAATGCAACCTTGCAACCTCTGCCTCCCGAGTTCAAGCGATTCTCCTGCCTTAGCCTCCTGAGT 5180
Query 109 AGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACC 182
||||||.|||||||||.|||||.||.|..|||.|| ||.||||||||||||||||||||||||.||||||||
Sbjct 5181 AGCTGGAATTACAGGCGCACGCCACTACACCCAGC---TTCTTTTTGTATTTTTAGTAGAGATGGAGTTTCACC 5251
Query 183 ATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG------------------------------------- 219
||||||||||.|||||||||||||||||||.|||..|
Sbjct 5252 ATGTTGGCCAAGCTGGTCTCGAACTCCTGAGCTCCGGTGATCCACCCGCCTTTACAGGCATGAGCCACCGTGCC 5325
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5326 CGGCTGCATTTCTCTTTTGTAAGAACCTGCTCTGGTTTATTGATATTTTGCTGTTTTTCTGTTTTAAGTTTCAT 5399
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5400 TAATTTCTGATCTTTAGTATTTTCTCCTTTCTTTGCTTTGGGCTTATTTGCTCCCTTTTCTAGCTTATTGTGGC 5473
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5474 GGAAGCTCAGATCATTGATTTTAAAATTTACTTATTTATTTATTTATTTATTTAATTCAACACTGATCAGAAGG 5547
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5548 CTTTTTGTGCTTTTCTAAAAAAAGCATTTAATGCTATAAATTTCCCATTTGCTTTATCTCACAAATTTTATTGT 5621
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5622 GTTGTAATTTTGTGTTCAATTTAGAATATTCTGATTTTTCTTGGTATTACTATAATTTTCAAATATTTAGAGTT 5695
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5696 TTTTTCAGTTATCTTTCTGTTACTGATTGTAATTTATTGTTTTTTAAAATTATAGTTCTTTGAATAGTTTTGCA 5769
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5770 GTATTTGCTCTAGGGATTACTATAAACATACTTCACTTTTTACAGTTCACTTAGAAGTCAATATTTTACCAGTT 5843
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5844 CAAGTGGAATGTAGAAAAATCTTACCACTGTTTACATTCCTTTACCCTCTCCCCTTTATGTTATAATTTTCTTA 5917
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5918 TAAATCATAAGACTTGGCTGGGCACAGTGGCTCACCTGTAATCCCAGGACTGGGAGGCCGAGGCGAGCAGATTG 5991
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5992 CTTAAGTCCAGGAGTTCGAGACCAGCCTGGACAATGTGGTGAAACCCCAACTCTACAAAAAATACACAAAATTA 6065
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6066 GCTAGGCGTGGTAGCATGTTCCTGTAGTCCCAGCTACTCAGGAGGCTGAAGTGGGAGGATTACTTGAGCCCAGG 6139
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6140 AGGCAGAGGTTGCAGTGAGCCAAGATCACTCCACTCCACTCCAGCCTGAGTGACAGAGCTAGACACTGTGTCTC 6213
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6214 AAAAAATAAAAATAAAAAATAAGACTCATCAGATAATGTATTTTTTCCTTACAACTATCATAGATATTTTTAAG 6287
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6288 AACCCAAGAGGAAAACAGTCTATCACATTTACCACAATATTTATCATTTGTATTAATCTTCCTTAATTCTTGAT 6361
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6362 GTTCCAAGTTTACATAGGTATCAGTCCTTTTCATCTGGAAAATTTCTTTTAGTGCAGGTCTGTTGACATTTAAT 6435
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6436 TCTCTTATTTTTTCTTCATCTGAGAATGTCTTTATTTTGCCTTAATTCATGAAAGATATTTTTGCTGGATATAA 6509
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6510 ACTACTGTGTTGACAGTTCTTTCAGCCTCCATGGTTTCTGATGAGAAATGTGCAGCCATTAAAGTAATATTTCC 6583
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6584 CCTGTATGAAACATGTTATTTTTCTCTGAGTATTTTCAGGAATCTTTGTCTTTGGTTTTTATTGGTTTGATTAT 6657
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6658 GATGTGCCCGGGTGTTTGAATTTATTCTCTTTGGGATTTGTTGAGCTTAAATGTGTAAGTTTATGCCTTTCATC 6731
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6732 AGATTATGTAAAGTTTTAAACCATTCAGATATTTTCTGCTCTACTTTCTCCTCCCTCTTAGGCTCCAGTGATGC 6805
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6806 AAGTGTTAGACTCTTTGGTATTATCTCACAGATCTCAGAACCTCTGTTCATTTATTTTATTTTAATAAATCATT 6879
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6880 TCAGTTAACAAAATCATATATTGTATGCAGCATGATGTTTCAATATGTATGTTCACATTGTAGGATGTCTAAAG 6953
Query 220 --------------------- 219
Sbjct 6954 TAAAGATAATGAACATATGCA 6974
