Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- NR_145836.2
- Aligned Length:
- 6811
- Identities:
- 188
- Gaps:
- 6595
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTGGCTTGGCGGCCGTTGTCTGTGGAGGGGGGCCTCGCCGGGCTCCCGGAGGCCGAGCGGTTCCTGTTGCATG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TAAATCATGTCCTTGTGGTTACATATTTATTAGCAGAAAACTTTTAAATGCAAAACACTCAGAGAAATCACCAC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTTCTACAGAAAACAAGCATGAGGCCAAGAGGAGGCGAACAGAGAGAGTTAGGAGAGAGAAGATAAATTCTACA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTAAATAAAGATTTAGAAAACAGAAAGAGGTCTCGAAGTAACAGCCATTCAGATCATATCAGACGAGGAAGAGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAGACCTAAAAGTGCATCTGCCAAAAAACATGAGGAAGAAAGAGAGAAACAGGAAAAGGAAATTGACATCTATG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTAACCTGTCTGATGAAAAGGCTTTCGTGTTTTCAGTCGCCTTGGCAGAAATAAATAGAAAAATTATCAATCAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGACTTATTCTCTGATACTTGTTTGCAAAATCTGCTGAAACTTCTGTCAGGATAACATCAGCAAATTCTCAAAC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGTTATGGACTCTCAGGAGCATTCTGACTGCATCAATAAGGGCCATCGATTGTTTCTTTCTCGCCTGTCGTTTA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCCTGTGCCACACTTCGGGAGCAAAGCTGTGTAGGCTTGGACTGTTCTGGGATTTCCTTGTTTACCAAGGAGTA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTGTCAGTGTTTTGTGTTTGGGATATAAGTAAGTGTATTTGCCAACAACAAAAAAAAACCAACAAAAATGCTGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATGGATGTTAAAGGATAAAAAGTGATGGGGTATGGGGTAGGTATGAAAACTAGGGTAATAAGATGCTTGATTGT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTTCAGGTTTGCCACCAGAGATGCAATATTTTAAATACTGTCAGAAAGAGTGATTTTTAAAAATATATATTTCA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GATTTTCAGTGCTAACAGATTGCATATATACAGTTCATTTACTTTTATTAAATTGGCAATCGATATTTTATTGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATGGGGAATTAAGAATATAAACTGTAAATTTTGTCTTAAATTGATTTTTTTTCTTGGCCTTTATTTTTATTACT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TAAGGTATGAGTTATATTTTAGGAGATACTTTCTAGACAGTTTGAAGTTTGGGTGCTATATGAAGAAAAACATT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TAATGATATACTCAGATATAAACACCTTGTTTTCTTGAATGTAATTTATTTATTAGCTAAAAAAAAAAAACAAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTGCTCTCAAGATGGTGCCTGTTAACCTAAACATGAAATATATTTATTACATGCAAAATATTTCTTAGCCACTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTAAGCAGTAATGTTTTATCTGAATGGATATTTGTTTCTATATCCTGATAATTATTTAAATTGTTACTTTCAAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTGGAAGAAAAAATAAACCTTAATATTGAAACTAAGTAGATTAAATAGTGTGATAAAAGTTTTTTGTTCTGGTG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AAGTTTGTGAAATATATTTAAATTCTTAATTTTTCTAGTGTTAAGTCATAATCGTTTATAGTTGATTTATATTA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AATGCTTTTGCATTTTGGCATATCAATTTAATGATTAACATATTCAAACTTGGTAATCACTCCCCTTATTTTCA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GTCGCTCTTCCCCCAATCTGTTTAGAAATCCTTTTAAAGCCTTCTTACAGAAGATAGTCATCAGTTAGATTTAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CCCCCTTTTAAGAGAATCTCCCTTTCAATTTTAGCCGTAACATTATCAATTTCAGACTTCATCCTGCATCTCCC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ATCACCTCCTCAAAGAAAAAAGGTCAACATTTTTTCCTACTTTATTTAAATGGTAACCAGCAGAGGGAGCTTAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GAGGTACTCTAGATAGGATAAAGAATTTTCCTAAGGATTCCTTTTCCTTTAATCCCTGTATCTATCTGCAGGTA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CTACTGCAACTATTTTGTATGCATTTTATTTATTTATTTAGGAGACAGAGTCTTGCTCGGTCGCCCAGGCTGGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GTGCAGTGGCACTGTCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTTATGCCTCAGCCTCCT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GAGTAGCTGTGACTAGAGGCGTGCGCCACCACGCCTGGCTGTTTTTTTTTTTGTATTTTTTAGTACAGATGGGG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TCTCAGCATGTTGGCCAGGCTGGTCTCAAATTCCTGGCCTTAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTGC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGGGATTACAGGCATGAGCCACTGCACTCAGCCTTGTGTGCGTTTTAGAGTCTTAACTAGTAGTTTCCCCAATA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ATGTAATGTGATTTTATCTTTGAAACATACTGTAAGGAAACTTTTGATTTTAAGTAAAAAAGCTTAAAAATGAT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TAATATCTAAAAATGCTTGTATACATATATATGTCCTCAGAAAAAGCAAGAACAGCTTGTGGAATAAGCACGTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TTTAAGGAATTATCGATGTCAGAGTCTATCCATTTAAAGCTGAAGACCATTACAGGAAAGTCATGTTAAAATAT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TCATTGGATATGGTAAAGGAGGTACTGGTGGCTGGGCTGGAGCTTGCCGTATAGAAAAGTAATTACTTCAGATC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TCATAATGTTAAATTATTGGCTTATTTAAAAATTTCCGTGGCAGAGAGGCAAATTAGGTTTCCTCTGTGACATA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ACCTATTTAACCAATTTTTCAAAAAATTGTACTCTATGAGCTTTCTTGTTATAAAGCTAAAAAATTTAATTTGT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CTAGGCATGTTGTAATGGTCCCAGAAAATATTACTTTGTCACTGGTGTCAGAGAAACCTCTGTCATCAGCAGAT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GTCCTAAGAGTATAATTATAGTTCTTTACTTAATCCAAAATTTGTTCTGCTCTGATATCTATAAATGATATGAT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TATTCAAAATACCTTGAAATGATTCCACAATTAGATTAGGTCTGTTGAAGATAACTTATTCTTAAATATGAGTA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AGATTAAATAAAAGTAGTTTGAGAGTTGTTACTCCCTGCCTCAACTCCATGGTATTCCAAAATGTTTTTGTGGG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CACTTTAATACTTGTAGTTTGATTTTGTTTGTTAGTTTTAGAAATGAACATTTCTTAGATTTTCATGGGTATTT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TTTGGCTGTATTTAAATGTAAATGATATAAAAGTAAGGGAAATTGTGCAAATTATTTCTTGTGTAGTAATCAGT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GGAAGTGATCAAACAGCTTGAAGCAGTTTATGATGAGAAAATTTAAAATTGCAAATGACCTGAAAATTTAGCCA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GTCTATTCTTATTTCTTTAAATTTCAGAAATACTTAAGAAAAAAAAAAAAAAGGTCAGTATGACCTCTGAGTTG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CTTCCTAAAAGTAATCAGATAGTGTTCTCCCTCAGATAAGATTTCAAATTGAAAAGTATTTGACTTCTTTAACT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CTAGTAATTGCACTTGATTCTCTAATTCTGATCATTAAAATGACTTGGCAATATTTAATTTTGGCTTGCCTTTC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AATCTGCATGTTTGTCTTAAATTTAGAAAAATTAAGCTCTTTACTTACTTTTATATAAAGTATTAATTGGCCAG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GCATGGTGGCTTACACCTGTAATCCCAACACTTTGGGAGGCCAAGGCAGGAGAGTTGTTTGAAGCCAGGAGTTT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GAGACCAGCCTGGGCAACATGATGAGACCGCGTCTCTACAAAAAGTAAAATTAGCTGGGTGTGGTGCTTCCAGC 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TACTAGGCAGCTGAGGCTAAAGGATCACTTGAGCCCAGGAGTTCGAGGCTGCAGTGAGTGATGATCTTGCCACT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GCACTCCAGCCTGGGAGGCAGAGCAAGAAACACCCTGTGTGAAAAAAGTATTGAATTTGTTTGATTCCACTTTC 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 AAAATATGCTCTAGATACAGGTAGTCATTCTGCCAAATTGTGTTCTTCTCTAAAACATTTTGTCCGTCATTCTT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 TGAAACTCATTCTTAATTATTTCCACTTTACCTTCTAGTTTGGTTTGATGCCTTATATTCTTGCTAGTTAAAAG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 CATTTTTTCCCTAGTATTTTCTGTCTTTCTAGCCTTTAAGGCATATTGTTGTTAACAAATCTCTTATTTAAGTT 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 AATTAAAGTTTTTTCTGTGCAGCTGGGTTTTTTCTTTTACTACATGACAAGCTTCATTTTTACATTTGGAAGTA 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 CATGTATATATGTTTATATATTTTTATTCTCAGGATCTATTTTCTAGGGAACTATTTTTTTAAATTATTCTTTT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 GTGCTGCCTTAACCCATTTATTATAGTTTGAATATTAGTAGTACTTACTACTCAAAGATTACAACTATACTAAT 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 AACTATCCTAACATACAAAGCAGACTCTCCAGGATTAAAAGTATGAGACATATAACAGAGTCTGGAATAGAATA 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 ATTCTTTTTACCCCAGTCAAGTATTTGCCTTTTGCATTATTAAGGAATCTGTTTTGTTCTTTTATTGATAATTT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 CTATATTTTTTTCTTTGCCTTATTGCACTGGTTGGGACTTTTTGCCTTGATCCAGTTGTAGGGGGGAAACATTC 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 AGTCATTAAGCATTAAATAACTTTGTTGTTGTTGTGGGCTTGAAAAAATACCCTTTAGTAGATTGAGGGTAGAC 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TCTTTTATTTCTGCTTGTTGGAAGTTTTCTGTCAGGAACAGATGTTGAATTTTGTCAGATGCTTTTTCTGCATA 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 ATTGATAGGACCTTTTTTCTCCCCTTTAGAATGTTCATATGGTGAAACATACTGATAGCTTTTCTTTTCTTTTT 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 TTTTTGACACGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAATGGTGCGATCTTGGCTCACTGCACCCTCTG 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 CCTCTTGGGTTCAAGCTTCCCTCACCAGCCTCCCAAGTACCTGGGTATACAGGTGTGCATCACCATGCCCGGCT 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 AATTTTTGAATTTTTAGTAGAGATAGGTTTTTACCATGTTGGCCAGGCTGGTCTTCAACTCCTGACTCAGCCTC 4884
Query 1 --------ATGG------AGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCA------ 54
.||| ||||||..||||||||||||.||||||.|.|||||..||||||.||||||
Sbjct 4885 CCAAAGTGTTGGGATTACAGTCTCGCTCTGTCGCCCAGGCTGGAGGGCAGTGGTGTGATCTTGGCTCAATGCAA 4958
Query 55 --CTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCAC 126
.|||||||||||||||.||||.|||||||||||||||||||..||||||.||||||||||.|||||||||.|
Sbjct 4959 CCTTGCAACCTCTGCCTCCCGAGTTCAAGCGATTCTCCTGCCTTAGCCTCCTGAGTAGCTGGAATTACAGGCGC 5032
Query 127 ACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTC 200
||||.||.|..|||.|| ||.||||||||||||||||||||||||.||||||||||||||||||.|||||||
Sbjct 5033 ACGCCACTACACCCAGC---TTCTTTTTGTATTTTTAGTAGAGATGGAGTTTCACCATGTTGGCCAAGCTGGTC 5103
Query 201 TCGAACTCCTGACCTCAAG------------------------------------------------------- 219
||||||||||||.|||..|
Sbjct 5104 TCGAACTCCTGAGCTCCGGTGATCCACCCGCCTTTACAGGCATGAGCCACCGTGCCCGGCTGCATTTCTCTTTT 5177
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5178 GTAAGAACCTGCTCTGGTTTATTGATATTTTGCTGTTTTTCTGTTTTAAGTTTCATTAATTTCTGATCTTTAGT 5251
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5252 ATTTTCTCCTTTCTTTGCTTTGGGCTTATTTGCTCCCTTTTCTAGCTTATTGTGGCGGAAGCTCAGATCATTGA 5325
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5326 TTTTAAAATTTACTTATTTATTTATTTATTTATTTAATTCAACACTGATCAGAAGGCTTTTTGTGCTTTTCTAA 5399
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5400 AAAAAGCATTTAATGCTATAAATTTCCCATTTGCTTTATCTCACAAATTTTATTGTGTTGTAATTTTGTGTTCA 5473
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5474 ATTTAGAATATTCTGATTTTTCTTGGTATTACTATAATTTTCAAATATTTAGAGTTTTTTTCAGTTATCTTTCT 5547
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5548 GTTACTGATTGTAATTTATTGTTTTTTAAAATTATAGTTCTTTGAATAGTTTTGCAGTATTTGCTCTAGGGATT 5621
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5622 ACTATAAACATACTTCACTTTTTACAGTTCACTTAGAAGTCAATATTTTACCAGTTCAAGTGGAATGTAGAAAA 5695
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5696 ATCTTACCACTGTTTACATTCCTTTACCCTCTCCCCTTTATGTTATAATTTTCTTATAAATCATAAGACTTGGC 5769
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5770 TGGGCACAGTGGCTCACCTGTAATCCCAGGACTGGGAGGCCGAGGCGAGCAGATTGCTTAAGTCCAGGAGTTCG 5843
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5844 AGACCAGCCTGGACAATGTGGTGAAACCCCAACTCTACAAAAAATACACAAAATTAGCTAGGCGTGGTAGCATG 5917
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5918 TTCCTGTAGTCCCAGCTACTCAGGAGGCTGAAGTGGGAGGATTACTTGAGCCCAGGAGGCAGAGGTTGCAGTGA 5991
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5992 GCCAAGATCACTCCACTCCACTCCAGCCTGAGTGACAGAGCTAGACACTGTGTCTCAAAAAATAAAAATAAAAA 6065
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6066 ATAAGACTCATCAGATAATGTATTTTTTCCTTACAACTATCATAGATATTTTTAAGAACCCAAGAGGAAAACAG 6139
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6140 TCTATCACATTTACCACAATATTTATCATTTGTATTAATCTTCCTTAATTCTTGATGTTCCAAGTTTACATAGG 6213
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6214 TATCAGTCCTTTTCATCTGGAAAATTTCTTTTAGTGCAGGTCTGTTGACATTTAATTCTCTTATTTTTTCTTCA 6287
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6288 TCTGAGAATGTCTTTATTTTGCCTTAATTCATGAAAGATATTTTTGCTGGATATAAACTACTGTGTTGACAGTT 6361
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6362 CTTTCAGCCTCCATGGTTTCTGATGAGAAATGTGCAGCCATTAAAGTAATATTTCCCCTGTATGAAACATGTTA 6435
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6436 TTTTTCTCTGAGTATTTTCAGGAATCTTTGTCTTTGGTTTTTATTGGTTTGATTATGATGTGCCCGGGTGTTTG 6509
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6510 AATTTATTCTCTTTGGGATTTGTTGAGCTTAAATGTGTAAGTTTATGCCTTTCATCAGATTATGTAAAGTTTTA 6583
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6584 AACCATTCAGATATTTTCTGCTCTACTTTCTCCTCCCTCTTAGGCTCCAGTGATGCAAGTGTTAGACTCTTTGG 6657
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6658 TATTATCTCACAGATCTCAGAACCTCTGTTCATTTATTTTATTTTAATAAATCATTTCAGTTAACAAAATCATA 6731
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6732 TATTGTATGCAGCATGATGTTTCAATATGTATGTTCACATTGTAGGATGTCTAAAGTAAAGATAATGAACATAT 6805
Query 220 --- 219
Sbjct 6806 GCA 6808
