Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- NR_146578.1
- Aligned Length:
- 5851
- Identities:
- 190
- Gaps:
- 5634
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTGCAGGAGGCCGCGGGCGCGAGACTGGGAATGCGCAGGGCCCCCGCCTGGCTCTACAAGCCCGGGCCGCGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCCGCCTTCCCCGCCGCCTCCCGGCGCTCCGTGCCCGCCCCACGAGGCCGGCGGCTGCTGCTACCTGGGGCCGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGCTGCTTGTGCCGTGAGCGACGGCCAGCCATTGTCCCCGCCGCTCCGTCAGCCGCGCCCGGCCGCGCGCGCAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGGAAGGCGCATTGGCGTCTTGCGGGCTCCGGGCCGGGTGGGCAGGATGGCCTCCACAAGCCGCATGGCGCGCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGGGAGCCTCCGTTGATGCCGCCGCGCCGCCCTCCGAGGCTGCATCCGCGGAAGCCCGGCTCCCCGAGCGCTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CGGCCCGGCCCGGCGCCCCGGACCTGAGTGCGTCCCCATGAAGGCGCCCGGGCTGGCCCAGGCGGCCGTGGCAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGGAGACCCCGGACTGGGCGCCCGAGCTCTGCCCCAGCCCCGAGTCGCGGTCGCCGGAGCCGCCTGCCAACCGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTTCAAGACTTCGACACGCTGGTCACCGTGGGAAAGCAACTAGAAGCCATTTGTGTCAAGGTAACGTCTGGAGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AACAAAAGGTCAGGAACGGCCAACGTCCCTACTGGCCACAGTCCAGCCCCAATCTGCAAGACAGAGCCAGCCGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCCGGGGGAATTCCCGCCTGGTGGGACTCCACGTCACCAGCCCCCAGCTGCTCAGGGTACAGCCCCTCGTGAGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ACCGAGCCACAGTCATGTTTCCTACATCAGCCTCCTGCTCAGGGGTTTGTACAGAGACCACTGCCAGCCCTCTA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GGTGGTCCCTGCAAAGAGAGTCCCAGCTCCCAAGGCTCCAAATGGACAGGGCACCATGTTGACCCCTTCGTTGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCTCCAGTTCGCCGACTGTAACATGTTTCATCCAGTTCAGGACGTTTATTTATTTCCAACTTGCATACAAAACA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TACTGAGAAACTAAAACCATCGTTAAAAGTGAAGACACGTTGAGACAGGTATCTCGACCTGCCAAGTATACAGC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TAAAGCTGAGTTCATAAAAAGGGATGATTTGGCCGACGGTCATCTGCCAGATTCTGATGATGATTCAGAACTCA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GTGTGGAAGAACATCAGAGGGAGAGGCAGGCGCTCTTTGACTTATCAAGCTGCTCCCTGAGGCCCAAAAGCTTC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AAGTGTCAGACTTGTAAAAAGTCATATATAGGGAAGTGGGGACTGGCCCAGCATTTTAAACTTAATCCAGGCCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGGCCAGCTGGACCCTGAGATGGTGCTATCTGAGAAAGCCAATGGGAGCACCCTCCGTGGGTGCACAGAGGAAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GGACGCTCAGCCTGACCTTCCCGGGGCTGTCCGTGCCAGCGGCTCCGCGTGAGGGAGGGGCCCGCTCCTGCTTG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GTGAGAGAGTCAGCACGCGGTGGCCTGGTCTCACTCTGTCGCCCAGGCTGGAGTACAGTGGAGCAGTCTGAGTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CACTACAACCTCCACCTCCCAGGTTCAAGTGATTCTCCTGCCTCAACCTCCCGAGTAGCTGGGACTACAGTCAC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GTACCACCAGTTGAAAAAGATCATCTAGCAAAGCCTTTTTTCCCAGCTACATATAAGGAATTTGAAAGTCGCAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AAAATGGTTAAGAAAATGTGCCAAGATTACCTCAGTAATTCTGGTCTGTGTTCTCAGGAGACCCTGGAAATAAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAATGTGTCTTCTGTGGCTTCAGCGTCACCTAGTGCAGGCTGCCATTCAACAAACGCATTGTCAACAGTCAACC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AAAAGAAACCCATTGGCCACCATACCCTGAGGACTAACCCTGACACAGATGCCCTTCCAGATGCCCTCAGTAGT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CTAACTGATTCCATCGCCCCAGCCTTGGGGGAGAAGCACTGCTGCCTATGCACTCCATTTACAGGTGAACTGTC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ACCCCTACAACTCAGCTTGCAACCAGCCCTGGCCACCACCAGTTTCCCCACACTGAGCTGAATATTGGACATGC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CCATCTTAGACATTCCAGCCCATTCTGAAATTCCACATCGATTCACCCGACAAAGTCTGAAGTTCCAGGGCAAT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTATCTGGAAAAGCTCACCTGGAATCATGTGTCATTTCAACCAACAACTGTCGAAGAGGACGTGGCATCAAAAC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CAAGGTTATCAATTATTTATAAGGGTTGTGTGGTGGTTGGTCCAAGCATCTCTCCTTCATGCCATCACTCCTTT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CAAGAGCTGCCTCTATTTTCTAATTTAGCACAGGAATTTAGATGCCCCTAAATAAGTAGGCATCCAGTATCTGC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CCACACCAGTTTTAGTGAGAGTACATATGGAGACACTGCCACCACCCCTGCTCTCCTACTGCATACCCCACCAT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GCCAAAGCATGGTGGCTCACACCTGTAATCCCAGTGCTTTGGGAGGCCAAAGAGGAGGAACACTTGAGGCCAGA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AGTATGAGACCAGCCTGGGCAACATAGTGAGACCTCATTTCTATAAATAAGTTAAAAAAACAAAAAAATAGGGC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ACAGTGGTGCACATGTGTGGTCCCAGTTACTCAGCAGGCTGAGGCTGGAAGATCACTTGAGCCCAGGAGTTTGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GGCTGCAGTGAGCTAGGATTATGCCACTGCACTCTAGCCTGGGCAACAGAGAGAGACCCCATCTCTAAAAAGAG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GGAGAAGAAGGAAGGAGGAGGAAGAAGAGGAAGAGGAGGAGGAGAAATACTGCTCTTTCTCAGGCCCAAGGTAA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AAAGGTTTTTGGTCTCATGTTGACCAGAAAGACATTGATATTTAATTAAGCAATATAAAAAGGCTCATTGTTAG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GATTAAAGAGTAAGTAAAATCAATATTGAGATAGGAGGATGGAGGACACCAACTGAGTTCCGATCCCAATGAAG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AGGAGAAAAAGCTACAACTATCTAGGTGAAATATCTACTTATCCTAGAAGAAGCCTTTTGACAGCAACATAAAA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TTCATACCTATAGGTTTTTAATTCCTATGGATGCCGTAGCAAATAACAAAAACTTGGATGGTGTAAAGTAACAG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 ATGTTTACTCTTTTCCAGTATTGGAGACCAGGAATCTGAGATCAAGGTGTGGGCAGGGGTGCGCTCCCCCTGGA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GGTTCTAGGAGAGGATCCTTCCTGCCTCTTCCAGCTCCTGGTGGCTCCAGGTGTCCCTGGGCTTGTGGCCACAT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CACTACATTCTCTGCCTCCATCTCCACGTGACCTTTTCCTCTGTGTCTGTGTCTCCTCTTCTGTCTCTTAGAAG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GACACTGGTCATTGGATTTAAAGGCCACCTGGGTAATTTATAGTGATCTAATCTCAAGAATCTTTCCTTAATTA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CATGCAAATACTCTTTATCCAAATTAGTTTGCATTCACAAATTCTGGAGCTTAGTACTTGGACATATATTTTGG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GGGGTTGATGGTTGGAGGGGCTTTTATTCAACTCAGTACATCTTAATAAGGAATTAATGCCCCCCAACTTGCCT 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TACAAGTCATATATTAAAAACAATGTTGGCCTGGCACAGTGGCTCATGCCTGTAATCTCAACACTTTGGGAAGC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CAAGGGAGGAGGATCACTTGAGCCCAGGAGTTGGAGACCAGCCTGGATAACAAAGGGAGACCCAGTTTCTACAA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 AATATTTAAAAATTAGCCAGGCATGATGGTGCATGCCTGTGGTCCTAGCTATTCAGGAAACTGAGGTGGGAGGA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 TCACTTGAGCCTGGAAGTTCAAGACAGCAGTGAGCTATGCTCACACCACTGCACTCCATCCTGGGCAACAGAGC 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TGGACTCTGTCTCAAAAAACATAACACTAAAACATCAAAATTAAAAAAAAAAAACACTGAAAGTAGCCTCCACT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 TACAAACTAATTACTCTTTCTTGAAAATATTACACTTTTTTTCTTCTATATCTCTACTCCTAGCTCTCAACACC 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TTTCTTAAGCCCACATCATAACCTGTCTTGCATAACTTTGTGAGTGCCCAACGTTTCACTGTACAAGATTGTAG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 AGCTGCATGCTTCTTAAGAATAAATCCACACTTTAGGTACCAGTAAATCCATGCAATGCCTCAGACGTTATAAC 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 CAAATAATGCCTGGAAAATCGACATGAATTTATGTGAAGCATAAGCCTTTAATTTTTTTAAAGAAAAGTAGATT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 GCTGTTTTTCCACATCATTTCAGAGCCGTTCTCTAGTTTTGCATGCCCTTTACTGCAGAACCATACAGATTTTG 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 TTCTCCATTTCATACATCATTTGTTGAAATGCCCTTTAAAATGTAACGGAATATAGAGCTTTATGGGAAAAAAT 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 GCTGTAGAAAATAAATTATCTTCTCTCTTTGTATTGGGAACCAAAAGGTCTCACCTTATTAATGACCACAGAGA 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 CTCTCCTAAAGCAATTCTGGAAGTCAAAACAGCTGGAGTCTAGTTTAATGGGAACCCTCATTAATTAGACAAGA 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 ACACCAAGGCTATGACCACAGCAGCTGGTAGCAGCAGCCCTGCAGTGAAGTAGACTCTCAGAGGACACAAGGAA 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 AGAGTGTATTGATAAGAAATCTACAGCAAAGGTGTAGCACATCATCATTTGATCTTGATACACTTGACTGTGGG 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 CAAAGTACCTGTTATGTAAAACATGCTTTGTTAGTTAGGGCCATGATAAGCTGCTTAAGCTGATGAATGAACAC 4662
Query 1 ---------------------------------------------ATGGAGTCTCATTCTGTCGCCCAGACTGG 29
|..||||||||.||||||||||||.||||
Sbjct 4663 CAAATCTCAGTGTTTTTTTTTTTTTTTTTGGTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCGCCCAGGCTGG 4736
Query 30 AGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGG-TCAAGCGATTCTCCTGCCTCGGCCTC 102
||||.|||||..|||||||.|||||||||||.|||.||||| |.||| |||.||.|||||||||||||.|||||
Sbjct 4737 AGTGCAGTGGGGTGATCTCAGCTCACTGCAAGCTCCGCCTC-CCAGGTTCACGCCATTCTCCTGCCTCAGCCTC 4809
Query 103 CGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGT 176
|.||||||||||||.|||||||.|.|||.|||||||||.||||| |||||||||||||||||||||||.|.|||
Sbjct 4810 CCGAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCCAGCTAA-TTTTTTTGTATTTTTAGTAGAGACGAGGT 4882
Query 177 TTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG------------------------------- 219
|||||||||||.||||||.|||||||.|.||||||||||||.|
Sbjct 4883 TTCACCATGTTAGCCAGGATGGTCTCAATCTCCTGACCTCATGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGG 4956
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4957 GATTACAGGCGTGAGCCACCGCACCCAGCCCGTATTTTTTTTTCTAACAAATACCTGGTGTTAAGCCCAAAGTG 5030
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5031 TGTGTTTCTGGTTGGCTGGTGATGCTCTTTCAAGTCCTGAATCAGGGACCCAATAACTTTCAACATTGTGGCTC 5104
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5105 AGCTCTCTTCAACAGCTGCCTCCAAGTTCTCTTGAGATATTGGTATTTATCAGAGGAGAGGGGATGGAGAAGGT 5178
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5179 ATATGCCTTTGCTAGAGCTGCCATAACAAAGGACTGTAGACTGAGGGGCTTAAACAACAGAAATTTATTTCCTT 5252
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5253 ACAATCCTGGAGGTCGGAAGTCTGAGATCAAGGTGTGGGCAGGGCTGGTTCCTCCTGAGGCCTCTCTCCTTGGC 5326
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5327 TTGTAGACTCTGTGTTCTCCCTTTGTCCTCATACAGTCGTCTCTCTGTGTGTGTCTGTGTCCTCATCTCTTCTT 5400
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5401 ATGAGGTGTCTTAGTCCATTTCAAGCTGCTATAACAGAACACCATAGACTGCAGGGCTTAAACAACAGACATTT 5474
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5475 ATTCTCCCATTGTCTTGGAGGCTATCTATCTACCTATGTAGCATCTATCTACCCATCTATCTATCATCTGTGTA 5548
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5549 TAATCTACCTATTATCTATCTATCTACTTATCATCTACTTATCATCTACCTATCATCTGTCTATTTTTCTGTCT 5622
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5623 ATCATCTATCTACCATCTATGTATCTACCTATCATCTAGCCATCTGTCATCTATCATCTATCACCTATCATCTA 5696
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5697 TCTGTCTCACCTATCATTTATCTATGTATTTGTGTATCATCATCACCCAGCTATGAACTATCTATCATGTATGA 5770
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5771 TGTATCTATCATCTATGTATCTACCTATCTGTTATTTTGGTCAAATATACATAATATAAAACTCACCATTTTAA 5844
Query 220 ----- 219
Sbjct 5845 CCATT 5849
