Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- NR_148047.2
- Aligned Length:
- 6910
- Identities:
- 195
- Gaps:
- 6695
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGGAGAGATGCGAAATCAGCGGTAGCAGGTGGCGCAGAAGGGAGAGGGGAGCGACCCTGGGGACCGACTCTGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GACCCTCGCCGAAGAGGTAGGAAACGGGGGACTGCACGTTCCTGAGGCCACTTCACACTTATTGAGCAAAACGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAAAATAACTCTAAAATCTGGACATGATATACAAAGTGACTGCCTAAAGGAGCTGAAGAGAGGACATAAGTGGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCGCCTCTGCTGTTGCATGTTGGCTTGGAGAACAGAAGATGAGGAGCCAAATAAGCAAGTCCTTCAGCCCCAGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTTCTAGCACGGGGCTGCATGTAGGCTATGCATTCTGGGGAGTGAGGAGATCATGAATGCTGAAAATAAATGAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGAATCCAGAAAAGCAAGAGTCAAAGAAGGCATCTGCAGGCCAAATCTCTGATCAACCCCTGACCCACATACAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACAAAATACACTCAAAGCAGCTCAGCTAAAGACAAAGATCTGCACTCAGAGTAGAGCTGCCTCCCCAGAAACAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGCTCGCAGTTCAGGCCCAGCAAGAAAATTACCTGCAAAACAAAGGAAAAACAACACTCATCAGAGAAAAAGAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAGAATCTGGAATCTTCACAACCTAGCATTCATCATATCCAAGATTGAAACCCAAATTATGGGACATATTTAAA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AACCAGGAAAATGGAACGTAGTCTTAAGAGAAAAGTCAATCAAATCTGACCTGGAGATGAATAATATATTGAAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTAAAAGGCAAGGGTTTTAATTTTTGTTTTCTTGTTTTTTTTCTGTTTGTTTGTTTGTTTTTGTTTTTGTTTT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTGAGATGGAATCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAGCCTCTGCCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCTGGGTTCAAGGAATTCTCCTGTCTCAGCCTTCCGAGTAGCTGGGACTACAGGCGCACGCCACCACACCCAGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TAATTTTTGTGTTTTTAGTAGAGACAGGGTTTCACCATATTGGTCAGGCTGGTCTTAAACTCCTGACCTCAGGT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GATCCACCTGCCTCGGCCTCCCAAAGTGCTGGCATTACAGGCATGAGCCACCGCACCCAGCCTTGTTTTCTGGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GTTTTGTTGAGATGAGGTCTCACTCTGTCACACAGGCTGGAGTGTAGTGGTGCGATCCCAGCTCACTGCAGCTT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TAAACTCCTGGGCTCAAGCAATCCTTTTGCCTCAGCTAGCATGCTCAGTTAATTTTTAAATATTTTTTGTAGAC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATGGGGTCTTGCTATGTTGCCTAGGCTGGTCTTAAACTCCTGGCTTCAAGCAATCCTTCCACCTTGGCCTCCCA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AAGTGGTAGGATTATAGGTGTAAGCTCTCCTGCCCAGCCGGCAAGGGCTTGAAAGTGTTATGTTATTTTATAGT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTTAGGAGGTTTTGTAGCTCTCTATGATGAAGTTTAAAAATTAAGAAAAAAAGCTTGTTTTTGATTAATCGAAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TCTCAGCACAGAAATGGGACATTTCATCAGAGAAATAGATACAATGAAGAAGAGCCAAATGGAAAGCCCCCTTT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTTGGTTGCTCTTTTTCTGCTTTCAAGGTTTATATTAGCTTGACTTAGATGTGCCTTGGAGTGGACTTCGTTAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GTCCCTTCTGCTTAGTGTTTGTCTAATATCTTGAATCTGCAAATCTCTGACTTTCATTACAGCTGGGAAGTGTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TGGTTATTATTTCTTTAAATATTTTTTCTACTTGAGTTTCTTCTCTCCCTCTGAGATTTCAATTACATGTATGT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTGTTTGATATCATCTAACAAGTCTCTGAGATTTTGTTCATTATGTTCTAAGTCTTTTTCCACTCTGTTACTCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTTTGAGTAATTTTGATTGATCTGTCTTAAAATTTACTCTTTCCTTTAACATGTCCACTTGGCTGTTAACTCCA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TCTGGTGAATTTTCTACTTAAGAAATTATACTTTTCAGCTGTAGAATTTACATGAAGAAGTACATTATCAACTG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TAAATGGGCCATGAAAAGTTAAGGTTGAATTTTGTAATTTATAAATCAACTATTAAACAGTGCAGAATAGCTGT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AAAGCATCAGGAAAATTAAAATAGAATATATCTTAAAATATTAAGTAATTTTTAAAGGCGGGAAATAAGAAATG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AAGAAACAAATGTCAGAGGAGACAAATAGAAAACAAAATAAAACAAAAATGATAGACTCATACCCAACCATTTC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AAAAATTACATTGAACATTTATGAGCTAAACACTCCAATTAAAAGACAGAGATTAATAATTGTTTTTAAATGGA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TACAAAAACAATTATAACATCTCACCAAAGAAGATACACAGATGCCAAAAAATTTGAAAAGCTGTTTAATAGTA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TATGTTATTAGGTAATTACAAATTAAAACAACAATGAGATACCACTACACATCTACTAGAATAGCCAAAATTCA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AAATGCTAACAACACCAAATGCTGGTAAGGATGTGGAACAACAGAAACTGTCATTCATTGTTGATGGGAATGCA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AAATGGTTTGGCCACTTTGAAAGACAGTTTTGACAGTTTCTTGCAAAACGAAACATACTTTTACCATATGATTC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AACAATCTTACTCCTGGGTATTTACCCAAATGAGCTGAAAACTTATGTCCACACAAAACCCTGCACATGGATGT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTATAGCAACTTTATTCATAATTGCCAAAAGCTGGAAGCAATCAAGATGTCCTTCAGTAGGCAAATGGATAAAC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CGTGATATATCCAGACAATGGAATATTATTCAGTGTTAAAAAGAAATGAGCTGTCAAGCCATGAAGACATGGAG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GAATGTTAAATGCATATTACTAACTGAAAAAAGCCAATTTGAAAGGGCTGTGTACTGGATGGGTCAAACTATAC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GACATTCTGGAAAAGGCAAAACCATGGAGACAAAAAGATCAGTAGTTGCCAAGGGTTGGGCAGAGGCAAGGATG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AATAGATGAAACATAGAAGATTTTTAAAGGAGTGTAACTATTCTATATGATACTGTCATGGTGGCTATATGTAC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 ATAAATACATTAGACATTTGTCAAAACTCATAGAATGTATAATACCAAGAGCAAACTCTAATGTAAACTACGGA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CTTTGGATAATAATGATACATCAGTGTAGGTTCATTGATTGTAGCAAATGCACCACTCTGGTATGGGATGTTGA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TAGTGGGGAGGCCATATGTGTAGGGGTAGGGGGTGTGTGGGAACTGTCTGTACTTTCATCTCAATTTAGCTGTG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 AATCTAAAACTGCTCTAAAAAAATAAAATCCATTTTTTAAAAACCTAAATATAAACTATGTGCAAAGACATACT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TTCAATATAAAGACAGAAGGAAACCAAATATAGATGGATAGAAAAAGATATATCATGTAAATAGTAAGCACAAG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AAAGCTGGAGTGGCTACATTAGTATCAAATAAAAATAGATTTCTAAAAAAAAGTATCATAAAAGATAAAGAAGG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GCACTTTAGAAGAAGAAAAGGAATAATTGATCAAGATGACATAAAATTTACAAATTTATTTGTGCCTAATAATA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GTCTCAAATTACATAAGGCAAAAACTGATAGAATGAAAGGAAGAAATAGGCAATTATAATTGGAAATTTTAATG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TCTCTCAGAAGTTGATAGAGTAACCAACAAAAAATCAGCAGACAGAAAACCTGAACAACATTATCAGTCACTTT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GACCTAATTAATATTTTTAGAACATTTCACTCAGCAATAGCAAAATGCACATTCTTTTCAAGTGCACATGGAAT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GCTTACCAAGATAGACCACATTCTGGACCATAAAAAAGTTTTAATAAATATTAAAAAGGTTGAAATCAAATAGT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 TTGTTCTCTGACCACAATGAAATTAAATTGGAAACCAAAAACAATAAGATAACTAGGAAAACCCCAAGCATTTG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 GAAACTAAGCAACACACTTCTAAATATTTATTGGGCTAAAGACTAAATCACAAGAGAGATTGAAAATATTTTGC 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 CCTGATGATAATATAAATACACATTTCAAAATTTGTGCAATGTAGCTAACATAGCACTTTGAGGGAAATTTACA 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 GTTTTGAAAGCCTATACGAAGTGGGGAAAGTTCTTAAATCAATGATCTTAATTTTCACTGTTAAAAAATAGAAA 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 AAAAAGAGTAAATTGAACTCAAAGCAAGCAGAGGAAGAAAATAATAAAGATAATGACAGACATCAATGAATTAG 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 AGAACGAAAAAAAGAGATAAAAAAATCATTAAAAGCAAAAAGCAGTCCTTTGAAAAAACTAATAAAATTGATAA 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 ATCTCAAGACTGACTGGCAAAGAAAAAAAAATGAACAATATCAAGAATGAGAGAAGGGACATTATTACTTTGGA 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 TATTAAAAGAATAACAATTCTCTATTGTTATGAACAACTTTATGACATTAAATGTGTCACAGATGAAATGAACA 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 CATTCTGGGAAATACATAAATTATAAATCTAATCAAAGATGAAATAGAAAGCTTGAACAGCCCTGTATCAATTA 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 AAGATATTGAATTTGTAATTAAAAACTTACTGAGAGAATTCTGGGTTTAGATGCTTCATTGATGAATTCTGACA 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 AACATTTATGAAAAAATAATACCAATCCTACAAAAACTGTTTAAGAAAATAAAGGAGGAGGCATGATTTTATGA 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 TGCAGTATTATTCTAATTCTACAGCCAGATGAAGACATCTTAAGAAAAAAACTACAGTCCAATATCCCTCATGA 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 ATATAAATGCAAAAATCCTCAACAAAATATTAGCAAGCCAAATCCAGCAGCATAAAAAAGGTTATACACTATGA 4810
Query 1 ---------------------------------------------------------ATGGAGTCTCATTCTGT 17
|||||||||||.|||||
Sbjct 4811 TCAAGGGGCAATGCAAAGTTTTTTTTTGTTTGTTTTGTTTTTTGGGTTTTTTTTGAGATGGAGTCTCAGTCTGT 4884
Query 18 CGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGG-TCAAGCGATTCTCC 90
|||||||.||||||||.|||||..|||||||.||||||||.|||||||||||| |.||| ||||||||||||||
Sbjct 4885 CGCCCAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGTAACCTCTGCCTC-CCAGGTTCAAGCGATTCTCC 4957
Query 91 TGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAG 164
||||||.||||||.||||||||||||||||||||||.|.||||||.|||.|||||| |||||||||||||||
Sbjct 4958 TGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACAACCACGCCTGGCTAA---TTTTTGTATTTTTAG 5028
Query 165 TAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG------------------- 219
||||||..|||||||||||||||||.||.|||||||||||||.||||||||||.|
Sbjct 5029 TAGAGACAGGGTTTCACCATGTTGGTCAAGCTGGTCTCGAACGCCTGACCTCATGATCCACCCACCTCAGTCTC 5102
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5103 CCATAGTGCTGGGATTACAGGTGTAAGCCACCGCGCCTGGCCAATGCAAAGTTGTTTTAACAGCTGACAGTTAA 5176
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5177 TCAATGTAATTCAACAAATTAATAGAATAAAGACAAAAACACAGACACAGTGGTGCAATGTAGCTAACATAGTA 5250
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5251 CTTAGAGGGAAATTTATCATTTTGAAAGCCTATAAGAAGGGGGTAAAAGGTCTTTTAGTCCTAGCCACTCAGGA 5324
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5325 GACTGAGGCAGGAGGTTTGTTGGAGACCAGGAGTTCAAGGCTATAGTGCACTATCATTGCACCTGTGAATAGCC 5398
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5399 ACTGCATTCCAGCCTGGGCAACATAGCAAGATCCTGTCTCTTAAAGAAAAAAAGGAAGAAGGTGAAAACAATAT 5472
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5473 GATCAGTTCAATAGGTGCAGCAATAGCATTTGTCAAAATTCAACTCCTTTTTATCATTAAAAAATCTTTCAGCA 5546
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5547 AATTAAGAATAAATTAAAACTTCCTCAACCTGATTAAGGGCATCTACAAAATCTGTCAGCTAACATCCTACTAC 5620
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5621 AATGTGAAAAATCAATGCTTTCTACCTAAGACGAGGTAGAGGGCAAGGATGTTGGCTCTCATCATTTTTATTTA 5694
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5695 ACTTAAATTGTATAGGAGTGCCTAGTCAGTGCAACAAAGCAAGGGAAAAATAAGGCATACATGCTAGAAAGAAA 5768
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5769 TAAGTAAAATTGTCCTTATCTACAAGTGACATTGTATAGAAAACCCTAAGAAACCCACAATAAAAGCTATTAGA 5842
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5843 GGTACAAGGTTGCAGGATAAAATATACAAAAATCAATTCAAGGTTGCAGGATAAAATATACAAAAATCAATTCT 5916
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5917 GTCTCACATACTAGCAACTAACATTTAGAAAGTTAAGTTATAAGACACTTTGTTTACAATAGCATAAAATACTT 5990
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5991 AGCAAAAGACATGTATGACCTGTAGGCTGAAAACAATAAAACATGACAGGAAGATCTGCATAAATGAACAGCTA 6064
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6065 TACCGTGTTCATGGATTCAAAGTCTCAATATTGTTAAGCTGGCAATCCTTTTTGAATTATTCAATAAATTCAAT 6138
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6139 GCAATTCCCACGAAAATCGTAACTTTTTTTTTGAAAAAAATTTGCAAGAGTATTTTAAATTTTATATGGGAAGT 6212
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6213 CAAAGGACCTAGTATAGCCACATCGTTTTGAAAGAGGAGAACAATATTGGAACACTTCAGCTACCTGATTTCAA 6286
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6287 GAACAATATGTGGCTCTGAAGGAATGAACCAATTTTATTCTTTGATCTATAAATTGGCATTTAAATAATTTCCA 6360
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6361 AATGAGGAGAGATGGGTAGCTCTGAGATAAGCATGTGACTTCCCAAGGTGGCCAATTTGAAGGGTAATTCTCCT 6434
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6435 TTGGGATGATTGCTAAGGGAAAAAAAAAATCCATGTTGAACATAAGGTTTGTAATCAAGACAACTGGATTTAAA 6508
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6509 TATTGGATGCACCATTCAGCTCTCTAAAACTGAGTATCTTCATCTTAAAATGGGATGTGCAGTGTAAGGATTAA 6582
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6583 GGCAGTAAAGTATAGAGGCTAAGCCGTGTGCTATAGCACTGGAGCTATCTTACCCAGGTTTGAATCTAGCTTGG 6656
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6657 CCATTTTCTAGCTATGTGGCCTTGGGTATGTTTAACCTTACTTTGCTTCATCTTGCTCATTTGTACAAGCACTG 6730
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6731 CTCGTTTTATTGCATTTCACTTTATTGCACTTCACATATATTGCATTTCTTACAAATTGAAAGTTTTTGGCAAC 6804
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6805 CTTGTGTGGGATAAGTCTATTGGTGCCATTTTTCTAACAGCATGTACTCACTTCATGTCTCTGTGTCAGCATTT 6878
Query 220 ---------------------------- 219
Sbjct 6879 TTTAGCAATAAAGTATTTTTTAAATCAA 6906
