Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- NR_148053.2
- Aligned Length:
- 6952
- Identities:
- 195
- Gaps:
- 6737
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGGAGAGATGCGAAATCAGCGGTAGCAGGTGGCGCAGAAGGGAGAGGGGAGCGACCCTGGGGACCGACTCTGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GACCCTCGCCGAAGAGTCCCAAGGGTTCCAAGGCCAGAGAGAGGTCCTGGTCTTGATTGCTGGCATGTTTACTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTCCAAGTACACTGAGATCAAATGCAAAGACAAACCATCAAAGAAAATAACTCTAAAATCTGGACATGATATAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAAGTGACTGCCTAAAGGAGCTGAAGAGAGGACATAAGTGGATCGCCTCTGCTGTTGCATGTTGGCTTGGAGAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAGAAGATGAGGAGCCAAATAAGCAAGTCCTTCAGCCCCAGGCTTCTAGCACGGGGCTGCATGTAGGCTATGCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTCTGGGGAGTGAGGAGATCATGAATGCTGAAAATAAATGAAGGAATCCAGAAAAGCAAGAGTCAAAGAAGGCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCTGCAGGCCAAATCTCTGATCAACCCCTGACCCACATACACACAAAATACACTCAAAGCAGCTCAGCTAAAGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CAAAGATCTGCACTCAGAGTAGAGCTGCCTCCCCAGAAACAGAGCTCGCAGTTCAGGCCCAGCAAGAAAATTAC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTGCAAAACAAAGGAAAAACAACACTCATCAGAGAAAAAGAACAGAATCTGGAATCTTCACAACCTAGCATTCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TCATATCCAAGATTGAAACCCAAATTATGGGACATATTTAAAAACCAGGAAAATGGAACGTAGTCTTAAGAGAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAGTCAATCAAATCTGACCTGGAGATGAATAATATATTGAAACTTAAAAGGCAAGGGTTTTAATTTTTGTTTTC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTGTTTTTTTTCTGTTTGTTTGTTTGTTTTTGTTTTTGTTTTTTGAGATGGAATCTTGCTCTGTCGCCCAGGCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GGAGTGCAGTGGCGCAATCTTGGCTCACTGCAGCCTCTGCCTCCTGGGTTCAAGGAATTCTCCTGTCTCAGCCT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCCGAGTAGCTGGGACTACAGGCGCACGCCACCACACCCAGCTAATTTTTGTGTTTTTAGTAGAGACAGGGTTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CACCATATTGGTCAGGCTGGTCTTAAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CATTACAGGCATGAGCCACCGCACCCAGCCTTGTTTTCTGGGGTTTTGTTGAGATGAGGTCTCACTCTGTCACA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CAGGCTGGAGTGTAGTGGTGCGATCCCAGCTCACTGCAGCTTTAAACTCCTGGGCTCAAGCAATCCTTTTGCCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CAGCTAGCATGCTCAGTTAATTTTTAAATATTTTTTGTAGACATGGGGTCTTGCTATGTTGCCTAGGCTGGTCT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TAAACTCCTGGCTTCAAGCAATCCTTCCACCTTGGCCTCCCAAAGTGGTAGGATTATAGGTGTAAGCTCTCCTG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CCCAGCCGGCAAGGGCTTGAAAGTGTTATGTTATTTTATAGTTTTAGGAGGTTTTGTAGCTCTCTATGATGAAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTTAAAAATTAAGAAAAAAAGCTTGTTTTTGATTAATCGAAATCTCAGCACAGAAATGGGACATTTCATCAGAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AAATAGATACAATGAAGAAGAGCCAAATGGAAAGCCCCCTTTTTTGGTTGCTCTTTTTCTGCTTTCAAGGTTTA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TATTAGCTTGACTTAGATGTGCCTTGGAGTGGACTTCGTTATGTCCCTTCTGCTTAGTGTTTGTCTAATATCTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GAATCTGCAAATCTCTGACTTTCATTACAGCTGGGAAGTGTTTGGTTATTATTTCTTTAAATATTTTTTCTACT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGAGTTTCTTCTCTCCCTCTGAGATTTCAATTACATGTATGTTTGTTTGATATCATCTAACAAGTCTCTGAGAT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTTGTTCATTATGTTCTAAGTCTTTTTCCACTCTGTTACTCATTTTGAGTAATTTTGATTGATCTGTCTTAAAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TTTACTCTTTCCTTTAACATGTCCACTTGGCTGTTAACTCCATCTGGTGAATTTTCTACTTAAGAAATTATACT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTTCAGCTGTAGAATTTACATGAAGAAGTACATTATCAACTGTAAATGGGCCATGAAAAGTTAAGGTTGAATTT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TGTAATTTATAAATCAACTATTAAACAGTGCAGAATAGCTGTAAAGCATCAGGAAAATTAAAATAGAATATATC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TTAAAATATTAAGTAATTTTTAAAGGCGGGAAATAAGAAATGAAGAAACAAATGTCAGAGGAGACAAATAGAAA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ACAAAATAAAACAAAAATGATAGACTCATACCCAACCATTTCAAAAATTACATTGAACATTTATGAGCTAAACA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CTCCAATTAAAAGACAGAGATTAATAATTGTTTTTAAATGGATACAAAAACAATTATAACATCTCACCAAAGAA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GATACACAGATGCCAAAAAATTTGAAAAGCTGTTTAATAGTATATGTTATTAGGTAATTACAAATTAAAACAAC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AATGAGATACCACTACACATCTACTAGAATAGCCAAAATTCAAAATGCTAACAACACCAAATGCTGGTAAGGAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GTGGAACAACAGAAACTGTCATTCATTGTTGATGGGAATGCAAAATGGTTTGGCCACTTTGAAAGACAGTTTTG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ACAGTTTCTTGCAAAACGAAACATACTTTTACCATATGATTCAACAATCTTACTCCTGGGTATTTACCCAAATG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGCTGAAAACTTATGTCCACACAAAACCCTGCACATGGATGTTTATAGCAACTTTATTCATAATTGCCAAAAGC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGGAAGCAATCAAGATGTCCTTCAGTAGGCAAATGGATAAACCGTGATATATCCAGACAATGGAATATTATTCA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GTGTTAAAAAGAAATGAGCTGTCAAGCCATGAAGACATGGAGGAATGTTAAATGCATATTACTAACTGAAAAAA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GCCAATTTGAAAGGGCTGTGTACTGGATGGGTCAAACTATACGACATTCTGGAAAAGGCAAAACCATGGAGACA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AAAAGATCAGTAGTTGCCAAGGGTTGGGCAGAGGCAAGGATGAATAGATGAAACATAGAAGATTTTTAAAGGAG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TGTAACTATTCTATATGATACTGTCATGGTGGCTATATGTACATAAATACATTAGACATTTGTCAAAACTCATA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GAATGTATAATACCAAGAGCAAACTCTAATGTAAACTACGGACTTTGGATAATAATGATACATCAGTGTAGGTT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CATTGATTGTAGCAAATGCACCACTCTGGTATGGGATGTTGATAGTGGGGAGGCCATATGTGTAGGGGTAGGGG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GTGTGTGGGAACTGTCTGTACTTTCATCTCAATTTAGCTGTGAATCTAAAACTGCTCTAAAAAAATAAAATCCA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TTTTTTAAAAACCTAAATATAAACTATGTGCAAAGACATACTTTCAATATAAAGACAGAAGGAAACCAAATATA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GATGGATAGAAAAAGATATATCATGTAAATAGTAAGCACAAGAAAGCTGGAGTGGCTACATTAGTATCAAATAA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AAATAGATTTCTAAAAAAAAGTATCATAAAAGATAAAGAAGGGCACTTTAGAAGAAGAAAAGGAATAATTGATC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 AAGATGACATAAAATTTACAAATTTATTTGTGCCTAATAATAGTCTCAAATTACATAAGGCAAAAACTGATAGA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 ATGAAAGGAAGAAATAGGCAATTATAATTGGAAATTTTAATGTCTCTCAGAAGTTGATAGAGTAACCAACAAAA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 AATCAGCAGACAGAAAACCTGAACAACATTATCAGTCACTTTGACCTAATTAATATTTTTAGAACATTTCACTC 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 AGCAATAGCAAAATGCACATTCTTTTCAAGTGCACATGGAATGCTTACCAAGATAGACCACATTCTGGACCATA 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 AAAAAGTTTTAATAAATATTAAAAAGGTTGAAATCAAATAGTTTGTTCTCTGACCACAATGAAATTAAATTGGA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 AACCAAAAACAATAAGATAACTAGGAAAACCCCAAGCATTTGGAAACTAAGCAACACACTTCTAAATATTTATT 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 GGGCTAAAGACTAAATCACAAGAGAGATTGAAAATATTTTGCCCTGATGATAATATAAATACACATTTCAAAAT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TTGTGCAATGTAGCTAACATAGCACTTTGAGGGAAATTTACAGTTTTGAAAGCCTATACGAAGTGGGGAAAGTT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 CTTAAATCAATGATCTTAATTTTCACTGTTAAAAAATAGAAAAAAAAGAGTAAATTGAACTCAAAGCAAGCAGA 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 GGAAGAAAATAATAAAGATAATGACAGACATCAATGAATTAGAGAACGAAAAAAAGAGATAAAAAAATCATTAA 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 AAGCAAAAAGCAGTCCTTTGAAAAAACTAATAAAATTGATAAATCTCAAGACTGACTGGCAAAGAAAAAAAAAT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 GAACAATATCAAGAATGAGAGAAGGGACATTATTACTTTGGATATTAAAAGAATAACAATTCTCTATTGTTATG 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 AACAACTTTATGACATTAAATGTGTCACAGATGAAATGAACACATTCTGGGAAATACATAAATTATAAATCTAA 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TCAAAGATGAAATAGAAAGCTTGAACAGCCCTGTATCAATTAAAGATATTGAATTTGTAATTAAAAACTTACTG 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 AGAGAATTCTGGGTTTAGATGCTTCATTGATGAATTCTGACAAACATTTATGAAAAAATAATACCAATCCTACA 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 AAAACTGTTTAAGAAAATAAAGGAGGAGGCATGATTTTATGATGCAGTATTATTCTAATTCTACAGCCAGATGA 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 AGACATCTTAAGAAAAAAACTACAGTCCAATATCCCTCATGAATATAAATGCAAAAATCCTCAACAAAATATTA 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 GCAAGCCAAATCCAGCAGCATAAAAAAGGTTATACACTATGATCAAGGGGCAATGCAAAGTTTTTTTTTGTTTG 4884
Query 1 -------------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCG 49
|||||||||||.||||||||||||.||||||||.|||||..|||||||.
Sbjct 4885 TTTTGTTTTTTGGGTTTTTTTTGAGATGGAGTCTCAGTCTGTCGCCCAGGCTGGAGTGCAGTGGTGTGATCTCA 4958
Query 50 GCTCACTGCAACCTCTGCCTCTCGAGG-TCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAG 122
||||||||.|||||||||||| |.||| ||||||||||||||||||||.||||||.||||||||||||||||||
Sbjct 4959 GCTCACTGTAACCTCTGCCTC-CCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAG 5031
Query 123 GCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCT 196
||||.|.||||||.|||.|||||| |||||||||||||||||||||..|||||||||||||||||.||.|||
Sbjct 5032 GCACGCACAACCACGCCTGGCTAA---TTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGTCAAGCT 5102
Query 197 GGTCTCGAACTCCTGACCTCAAG--------------------------------------------------- 219
||||||||||.||||||||||.|
Sbjct 5103 GGTCTCGAACGCCTGACCTCATGATCCACCCACCTCAGTCTCCCATAGTGCTGGGATTACAGGTGTAAGCCACC 5176
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5177 GCGCCTGGCCAATGCAAAGTTGTTTTAACAGCTGACAGTTAATCAATGTAATTCAACAAATTAATAGAATAAAG 5250
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5251 ACAAAAACACAGACACAGTGGTGCAATGTAGCTAACATAGTACTTAGAGGGAAATTTATCATTTTGAAAGCCTA 5324
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5325 TAAGAAGGGGGTAAAAGGTCTTTTAGTCCTAGCCACTCAGGAGACTGAGGCAGGAGGTTTGTTGGAGACCAGGA 5398
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5399 GTTCAAGGCTATAGTGCACTATCATTGCACCTGTGAATAGCCACTGCATTCCAGCCTGGGCAACATAGCAAGAT 5472
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5473 CCTGTCTCTTAAAGAAAAAAAGGAAGAAGGTGAAAACAATATGATCAGTTCAATAGGTGCAGCAATAGCATTTG 5546
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5547 TCAAAATTCAACTCCTTTTTATCATTAAAAAATCTTTCAGCAAATTAAGAATAAATTAAAACTTCCTCAACCTG 5620
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5621 ATTAAGGGCATCTACAAAATCTGTCAGCTAACATCCTACTACAATGTGAAAAATCAATGCTTTCTACCTAAGAC 5694
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5695 GAGGTAGAGGGCAAGGATGTTGGCTCTCATCATTTTTATTTAACTTAAATTGTATAGGAGTGCCTAGTCAGTGC 5768
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5769 AACAAAGCAAGGGAAAAATAAGGCATACATGCTAGAAAGAAATAAGTAAAATTGTCCTTATCTACAAGTGACAT 5842
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5843 TGTATAGAAAACCCTAAGAAACCCACAATAAAAGCTATTAGAGGTACAAGGTTGCAGGATAAAATATACAAAAA 5916
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5917 TCAATTCAAGGTTGCAGGATAAAATATACAAAAATCAATTCTGTCTCACATACTAGCAACTAACATTTAGAAAG 5990
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5991 TTAAGTTATAAGACACTTTGTTTACAATAGCATAAAATACTTAGCAAAAGACATGTATGACCTGTAGGCTGAAA 6064
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6065 ACAATAAAACATGACAGGAAGATCTGCATAAATGAACAGCTATACCGTGTTCATGGATTCAAAGTCTCAATATT 6138
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6139 GTTAAGCTGGCAATCCTTTTTGAATTATTCAATAAATTCAATGCAATTCCCACGAAAATCGTAACTTTTTTTTT 6212
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6213 GAAAAAAATTTGCAAGAGTATTTTAAATTTTATATGGGAAGTCAAAGGACCTAGTATAGCCACATCGTTTTGAA 6286
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6287 AGAGGAGAACAATATTGGAACACTTCAGCTACCTGATTTCAAGAACAATATGTGGCTCTGAAGGAATGAACCAA 6360
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6361 TTTTATTCTTTGATCTATAAATTGGCATTTAAATAATTTCCAAATGAGGAGAGATGGGTAGCTCTGAGATAAGC 6434
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6435 ATGTGACTTCCCAAGGTGGCCAATTTGAAGGGTAATTCTCCTTTGGGATGATTGCTAAGGGAAAAAAAAAATCC 6508
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6509 ATGTTGAACATAAGGTTTGTAATCAAGACAACTGGATTTAAATATTGGATGCACCATTCAGCTCTCTAAAACTG 6582
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6583 AGTATCTTCATCTTAAAATGGGATGTGCAGTGTAAGGATTAAGGCAGTAAAGTATAGAGGCTAAGCCGTGTGCT 6656
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6657 ATAGCACTGGAGCTATCTTACCCAGGTTTGAATCTAGCTTGGCCATTTTCTAGCTATGTGGCCTTGGGTATGTT 6730
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6731 TAACCTTACTTTGCTTCATCTTGCTCATTTGTACAAGCACTGCTCGTTTTATTGCATTTCACTTTATTGCACTT 6804
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6805 CACATATATTGCATTTCTTACAAATTGAAAGTTTTTGGCAACCTTGTGTGGGATAAGTCTATTGGTGCCATTTT 6878
Query 220 ---------------------------------------------------------------------- 219
Sbjct 6879 TCTAACAGCATGTACTCACTTCATGTCTCTGTGTCAGCATTTTTTAGCAATAAAGTATTTTTTAAATCAA 6948
