Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- XR_001737361.2
- Aligned Length:
- 6294
- Identities:
- 190
- Gaps:
- 6079
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAAGCAAGAACAGCACTGCTGGGCTGGAGACGGCGGGAGCCGCTGCTCTCCGGCTGAGGGAATCAGAGACAGCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCGTCCCTAGTGGAGCGCAGGGGAGGCAGAAGTCATGACAGGCGAGGTGGGTTCTGAGGTTCACCTAGAAATCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATGACCCAAACGTCATTTCACAAGAGGAAGCAGATAGTCCTTCAGATAGTGGACAGGGCAGCTATGAAACAATT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGACCCTTGAGTGAAGGAGATTCAGATGAAGAGATATTTGTAAGTAAGAAGTTGAAAAACAGGAAGGTTCTACA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGACAGTGATTCCGAAACAGAGGACACAAATGCCTCTCCAGAGAAAACTACCTATGACAGTGCCGAGGAGGAAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATAAAGAGAATTTATATGCTGGGAAAAATACAAAAATCAAAAGGATTTACAAAACTGTGGCAGACAGTGATGAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGTTACATGGAAAAGTCTTTGTATCAGGAAAATCTTGAAGCGCAAGTGAAACCTTGCTTAGAGCTGAGTCTTCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GTCTGGAAACTCTACAGACTTTACCACTGACAGAAAGAGTTCCAAAAAGCACATACATGATAAAGAAGGAACTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAGGAAAAGCAAAAGTAAAATCAAAAAGAAGACTTGAGAAAGAGGAGAGAAAAATGGAAAAAATTAGACAGCTA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAAAAGAAGGAAACAAAAAACCAGGAAGATGATGTAGAACAGCCATTTAATGACAGTGGCTGTCTTCTTGTGGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TAAAGACCTTTTTGAAACTGGGTTGGAGGATGAAAATAACTCTCCATTGGAAGATGAAGAGTCATTAGAATCAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TAAGAGCAGCTGTAAAAAACAAAGTAAAAAAGCACAAGAAAAAAGAACCATCTTTGGAGAGTGGGGTCCATTCA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTTGAGGAAGGAAGTGAGTTATCAAAAGGAACCACGAGGAAGGAAAGAAAGGCAGCCAGATTAAGTAAAGAAGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATTAAAACAACTGCATAGTGAGACTCAGCGCCTTATTCGAGAGTCTGCACTGAACCTTCCATATCATATGCCTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGAATAAAACCATTCATGATTTCTTCAAACGTAAACCCCGGCCCACTTGCCACGGAAATGCCATGGCACTATTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAGTCATCTAAATATCAGTCAAGCCATCACAAAGAAATCATAGACACTGCAAATACTACTGAAATGAACAGTGA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCACCATAGTAAAGGTTCTGAGCAGACAACAGGTGCAGAAAATGAAGTGGAAACTAATGCACTCCCTGTAGTTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CAAAGGAAACCCAGATCATTACTGGATCAGATGAGTCTTGCAGGAAGGATTTGGTAAAAAATGAAGAGCTAGAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ATTCAGGAGAAACAGAAGCAGAGTGACATTAGACCTTCACCTGGGGACAGCTCAGTGTTGCAACAGGAATCCAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTTCCTCGGGAACAATCACAGTGAGGAATGTCAGGTTGGAGGGCTTGTAGCATTTGAACCTCATGCCCTGGAGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GTGAAGGCCCCCAAAATCCAGAAGAAACAGATGAGAAAGTGGAAGAGCCTGAGCAGCAAAATAAATCATCAGCA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GTTGGGCCACCTGAAAAAGTGAGACGGTTTACTCTGGATAGACTTAAGCAACTGGGAGTAGATGTTTCCATTAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ACCACGGCTAGGTGCTGATGAAGATTCCTTTGTGATACTTGAACCTGAAACCAACAGAGAACTGGAAGCCTTGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGCAGCGTTTCTGGAAGCATGCTAATCCAGCAGCCAAACCCAGGGCTGGTCAGACAGTGAATGTGAACGTCATA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTGAAAGACATGGGCACTGATGGAAAGGAAGAGCTAAAAGCAGATGTGGTACCTGTGACTTTAGCACCTAAGAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GTTGGATGGAGCAAGCCACACAAAACCAGGTGAAAAGCTTCAGGTGTTAAAAGCTAAACTGCAAGAAGCAATGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AACTCCGAAGGTTTGAGGAGCGCCAGAAGCGCCAAGCACTGTTTAAATTAGATAATGAAGATGGGTTTGAGGAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GAGGAGGAGGAAGAGGAAGAAATGACAGATGAGTCTGAGGAAGATGGAGAAGAGAAGGTAGAGAAAGAAGAGAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AGAGGAAGAACTAGAGGAAGAGGAGGAGAAAGAAGAGGAGGAGGAAGAAGAAGGAAATCAGGAGACTGCAGAAT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TCCTTCTTAGTAGTGAAGAAATAGAAACAAAAGATGAAAAAGAAATGGATAAAGAAAATAATGATGGCAGTAGT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GAAATTGGCAAGGCAGTTGGCTTCCTCTCTGTTCCCAAGTCTCTCTCATCAGATTCTACTTTACTTCTGTTTAA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GGACAGCTCTTCCAAGATGGGTTACTTTCCTACTGAAGAAAAATCAGAAACAGATGAAAACTCAGGCAAGCAGC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTAGCAAACTGGATGAGGATGATTCATGTTCATTGCTAACAAAGGAGAGCAGCCACAATAGCAGCTTTGAGCTG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 ATTGGCTCCACGATTCCATCCTATCAGCCTTGCAACAGACAAACAGGCCGTGGGACCAGTTTTTTCCCTACAGC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AGGAGGATTCAGATCTCCTTCCCCTGGGCTATTTCGAGCCAGTTTGGTCAGCTCAGCTTCTAAGAGTTCAGGGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AACTGTCTGAGCCTTCACTTCCCATAGAGGATTCCCAGGATCTGTATAACGCCTCCCCAGAGCCTAAGACACTT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTCCTAGGAGCAGGAGACTTCCAGTTCTGTTTAGAAGATGACACTCAGAGCCAACTGTTGGATGCAGATGGGTT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTTAAATGTTAGAAACCACAGGAATCAGTACCAAGCTTTGAAGCCTCGATTGCCATTGGCCAGTATGGATGAGA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ATGCCATGGATGCCAACATGGATGAGCTGTTGGATTTGTGTACTGGAAAGTTCACATCTCAGGCTGAAAAACAT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CTACCCAGGAAGAGTGACAAGAAAGAGAACATGGAGGAACTTCTGAACCTTTGTTCAGGAAAATTCACTTCTCA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GGATGCCTCCACTCCAGCCTCATCAGAGTTAAATAAACAGGAGAAGGAGAGCAGCATGGGTGATCCAATGGAAG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 AAGCACTTGCTCTTTGCTCAGGCTCTTTTCCCACAGACAAGGAAGAGGAAGACGAGGAGGAGGAATTTGGAGAC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TTTCGGCTTGTTTCAAATGATAATGAGTTTGATAGTGATGAGGATGAACACAGTGACTCTGGTAATGATCTGGC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 ACTGGAAGACCATGAAGATGATGATGAAGAAGAACTCCTGAAGCGATCTGAGAAGTTGAAAAGGCAAATGAGGT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TGAGGAAATACCTGGAGGATGAGGCAGAGGTGTCAGGAAGTGATGTGGGAAGCGAAGATGAGTATGATGGGGAA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GAAATTGATGAATATGAAGAGGACGTAATTGATGAAGTACTTCCTTCTGATGAGGAACTGCAGAGTCAAATCAA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GAAAATACACATGAAAACTATGTTGGATGATGATAAGCGACAGCTACGTTTATACCAAGAGAGGTACCTTGCTG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 ATGGGGATCTGCACAGCGATGGTCCTGGGCGAATGAGGAAGTTTCGATGGAAAAACATAGATGATGCTTCCCAG 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 ATGGACTTGTTCCACAGAGACTCTGATGATGATCAGACTGAAGAACAGCTTGATGAGTCAGAAGCCAGGTGGAG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 GAAGGAGCGAATTGAACGAGAGCAGTGGCTTCGGGACATGGCACAGCAGGGGAAAATTACAGCTGAAGAAGAAG 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 AAGAAATTGGGGAGGACAGTCAGTTTATGATACTGGCCAAGAAAGTTACAGCCAAAGCACTGCAGAAGAATGGT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GAAGACAGGCTCACTGCTAAACCAGCCCAAAGCTGTGCTTCAGAAACTGGCTGCTCTCTCTGACCATAACCCCA 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 GTGCTCCTCGAAATTCAAGAAACTTTGTCTTTCATACACTTTCTCCTGTCAAGGCTGAGGCGGCAAAGGAATCG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TCTAAGTCTCAGGTAAAGAAAAGGGGTCCATCTTTCATGACTTCTCCTTCACCTAAGCACCTCAAAACAGATGA 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 TAGCACTTCAGGATTGACGCGAAGCATCTTCAAATATTTGGAGAGCTAACACCATCAAAGGTGCCAAAATCTAC 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 ATTGAGACTGCTTTGAGAAGTTTCTAGCACTGAAAGTTGGAATTGACACTCCAGCCAATGATCCTTCCTTCTTT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 CATAATCAATGCAATAAGATTGCAGACAGAAATTCCAGTGATTTCTACTGCACAGCTCTGGACATCTCTTTTCC 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 TAGTATTATTCCCTGAATTGGCCACTGATTTCAATTCTGCAGTATTTACAACATCAACAACTCATGGAATACTT 4292
Query 1 ---------------------------------AT-GGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGC 40
|| |||||||||.|||||.||||||..|||||||.||||||
Sbjct 4293 GGGTGAGGTTTCCTTTTTTTTTTTTTTTTTAAGATGGGAGTCTCACTCTGTTGCCCAGCTTGGAGTGCAGTGGC 4366
Query 41 ATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGG-TCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTG 113
.||||||||||||||..|||.||||||||| |.||| |||||||||||||||.|.||.||||||.|||||||||
Sbjct 4367 GTGATCTCGGCTCACCACAATCTCTGCCTC-CCAGGTTCAAGCGATTCTCCTCCTTCAGCCTCCCGAGTAGCTG 4439
Query 114 GGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTT 187
||||||||||||...||.|..|.||||.||||| |||||||||||||||||||||.||||||||||||||||
Sbjct 4440 GGATTACAGGCATGTGCCAATACGCCCAGCTAA---TTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTT 4510
Query 188 GGCCAGGCTGGTCTCGAACTCCTGACCTCAAG------------------------------------------ 219
||||||||||||||.||||||||||||||||.
Sbjct 4511 GGCCAGGCTGGTCTTGAACTCCTGACCTCAAATGATCCATCCACCTCGGCCCCACAAAGTGCTGGTCACATGCA 4584
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4585 TGAGTCACTGCACCTGGCCTTGGGTTAGGTTTCACTTCCTCCATTAGACATTTGACATTTTATTGTAGCAGCTT 4658
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4659 TCTGGGTTAATATCTCTTTGTGATTGATAGAAGTGGTTGGAAGAGGAAGAGTAGGGAAAAGTGTGACATTACAG 4732
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4733 ATTAAACAGTGAAAATCAGTACCATAATGACTCCTTTACACCCATGAGATACGTACCATGATGACCAGGGCTCG 4806
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4807 GTGAAAGAAAGATTTCTTTTTTTTTTTTTGAGATAGTCTCACTTTGTTGCCCAGTCTGGAGTGCAGTGGCGCAA 4880
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4881 TCTCGGCTCACGGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGTCTCAGCCTCCCAAGTAGCTGGGACT 4954
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4955 ACAGGTGCATGCCACCACACCTGGCTAATTTTTGTATTTTTAGTGGAGACAGGGAGTCACCATGTTGGCCAGGC 5028
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5029 TGGTCTCGATCTCCTGACCTCAAGTGATCCAGCTGCCTCAGCCTCCCAAAGTGCTGAGATTACAGGCGTGAGCC 5102
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5103 ACTGTGCCCAGCCAAAAGAACGATTTCTTAGATGGAGGACCTAGGAACCAACAGATGGGCTGCTGTATTACTCT 5176
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5177 TACCCCTTTCATTTTCCTGTATGCTTCTTCCCAAGGCAGCATCAAATTTTGAATTAATTTTTGCTGCTTAATAA 5250
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5251 GGACTTAAACTGGTACCCAAGTCAGAAAGACTCTGCCTCTAATTTTCTGGGGCTTGGGGATGAAGATAAAGTGT 5324
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5325 TACACCCAGTGTTTGTCCACCACAGTCTGTGGGGCAGAGAGACCCTTCCTGGGACTGAATTCTCAATTTGAAGC 5398
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5399 ACTGTTGTTCAAAGATCTCCCTTCTGGGTCTGACAAGAAGAAACATAACCCTTATTTATTGCATTCTTCTGGCT 5472
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5473 TACATACATTGCCCTCACTAATCAATGGACATTTCAGCATTTCATTACTAATTTTGAGAGAAGGCCACCATGGA 5546
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5547 ATTTAATAAAAATATTATTGAAGAGAATTGCCATCATTCTCCATTTTCCCTGAACTACCACAAGCTTCTCAGAA 5620
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5621 TTTTAGACAAATGTTTTTCCCCTCAGAACTGAGCATCAGTGCTGCTTTGGAAAAACATTCCATGTGAATACTGT 5694
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5695 GGTTTCAGTGTCAGGACCTGTACTTGGGCAGTTGGAAGAGAGTGTGCCAGTTTTTTACTGGGAGATGGGAACAC 5768
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5769 CAATTTAATTGATGCAATTAGGTTGTAGGTTTTTTACAGTTTTTCTTTTCTTTTCTTTTTCTTTTTCTTTTCTT 5842
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5843 TTCTTTTCTTTTTTTTTTTTTGAGACATAGGCTGGCTCTGTCACCTAGGCTGGAATACAATGGCATGATCTCGG 5916
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5917 CTTACTGCAACCTCCGCCTCCTAGGTTCAAGCAATTCTGCCTCGGCCTCCCAAATAGCAGGGATTACAGGCACC 5990
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5991 TGCCACCACTCCCAGCTAATTTTTTGTATTTTTATTAGAGATGAGGTTTCGCCATGTTGGCCAGGCTGGTCTTG 6064
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6065 AACTCCTGACCTGAGGTGATCCACCCGTCTCGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACCGCACC 6138
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6139 CGGCCGGTTTTCTACAGTTTTCTAATACTCAAGATGTTGACTTTGACAATACTTATGTTTGTATACTTGTAATC 6212
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6213 TTATAATGGGGAAAATGTGTATAAAGATGTTTTAATATGTATGTAGTTTTTCAATAAATCTTAATGCCTTGAAG 6286
Query 220 ---- 219
Sbjct 6287 GGAA 6290
